LOC110510603 (LOC106578002)


Basic Information

Item Value
gene id LOC110510603
gene name LOC106578002
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14484922 ~ 14495193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975414.1
AACGCTTATGCCAGATTGACCATGTGTAGCCTAGCCCTATACAGTAGAAATAGTTATCTCGTAAAAACCACTAGGTAGCGTTAAAATGCTCATGTAGCGGAAGAATTGCGGCTTTCAACCCGACATAAAAACCCGAATGtaggcctcacacacacacaaaacagtaAGGTTCAGTCATATGACTGACTCACAGGAAGATCTTTGGTCGTGAGGTTTAAGTGGGCAGAGCATAGAAGTCCTACACATCACGGATTCCTGCCTGAACTGGGAAATGTCCTAACTCCTGTGTATTGAAGGATATTCCATTGAAAGTCGGAGCGCAGCATACACATAAAAGTGAAAGGAACGTAAAACACAACTTTTTATTTTGCAACAAACAAATGTAGCGGGCACTCAAACCGGTTTCACGGGGAGGAATGTTTGTGTTTTACACTTCGTGTCGTTAGTGAGAATATACATCATGGACACTCTACAGGAGAACGGGCTACCGCACTCACCTGCACTCGATATTCCCGGTCGTGAAAGTACCGCCAAAGAACTCGGGGTATGTGGGACTCCCCTTATTAAAACAAAGGGCAATAATGGAACAACGGAAAGAAGTTCACCTGCCAATCATGTCACGGCGGAGTTTGGCAACCAGCAGTTGTACCAAGGACCATTGGTAAACGCTCCTGCTCCTTCCACGACACCTCTCGGGTTACCTGGCGTTATGGACGTAGAAGGGAGAGTGGACGAGTCCAGGCTGCTGATGCACATTTTCAAGAATGGTGGTGTATCCCCTTCGGAGCGTGGCCAGGTGTGGCGTTTCCTGTTCGGGATGTACCCCTGCAGCTCCACCTCTCTGGAGCGCCCCCTACTGCAGGAGCAGCTCAACGTCCGCTACCACTCCATGAAGAGGAAGTGGCAGCAGCTTTTTCCTGCCGCCGTCCGACTGTGTATAAATGGCACCGATGCTGAGTTGGTGGCAGCGGTGCGGTACTACGATGTGAGGTAGGACAGGGTCCAGCTGCAGGCTCAGAACCAGAGTGATGAGGTCAGGGAGAGGCTGTCCTTCCTGGAGCTACAGGCCCAGGGGTGAAGGCTTGGGCAATCTGCTGGTGTTGAGGGATAttctcatcacatatgctgcttttCACCCAGAGGTAAGCTATGCCCAGGGGATGAATGACCTTTGTAGCCGATTCCTGGAGGTGCTGGACTCTGAGGTGGACACCTACTGGAGCTTCTCCTGCTACATGGAGAAGTTCTCCAAGGACTTCCGCGCTGACGGCCTGCACAGGAAGATAGagctggaggcagcactGCTGAAGGAGTTGGACCCTCAGCTCCACACCCACCTGATCACAGATAGCATGGAGAGTTTCACCTTCTGTCAcagATGGCTGCTGCTGGGTTTCCAAAGAGAGTTTGAGCACTGTGATGCCCTGCGTCTCTTTGAGATCCTGAGCTGTGACCACCTGGAGCTCATCTCCCAGCAGGTGGACCGCGCCCGCTACCAGGAGAGGATCGCTCGCAGGCACAGTCGAGAGGATAAACCAGTGTCTGAGGCACAGGCCGTCAACACGGAATTCACCTTTGAACTCTTCATCTGTGCCACCATATTATTGGACAACAGAGATGCCCTGCTGAGCTGTAGGAACGACGTGCAGCTCATCCAGTTCACcaatagTTTGCAGGGAACTCTGGACCTGAACCTCACACTGAAGAAAGCAGAGGAGCATTTCTACAACTACTGTAAGCGCTCTGCTTGGGACTATATGAATGGCCGCTGCAGGACAAGTAAAAACAAGGAGGACCACTTCTTGTTCCAGCTCCGCAGCTTCTTCTCCTGAACTCAGATCAGTCCTTAACTTAACCTCTTGAACATTCAGCTACAACCTGTAGTAACTGTGGGGTGGACTCAAAACAAGGGACATATTTCCTAAGAGGAGTGTGTACTATTTACATGTCTTGTCCACTAACGTTGAAGTATTAATATTGCTGTGGGATCTACCTAGGACTATGATGTGTCCAAAAGGAGTTCTCACCCTTGATCTGAGATTCAACTACATAATATGTGATACTACTGGAAGAAAACAAGTCTTGGAACTGCATCAAGACCACTGAAAAATTGCATGTAGCAACAGTTTGCATGTGTTGTGACTCCCTGGTGATTGgtaaacatagaaatagaattatgGGGATGCCTGTTCTAGTCAGTCTATTTCCAAGGATATAAAGAGGATGCCAGCTGCTGACCTATGTGTCATAGTGGACCTGTGTGACCGGAGTAGCTGCTCATTGGTTCAGTTCCGAGAGAGAGCCGGGAGGTGGGGTCAGGTTCGATTAGTTCTACAAGATCCCTCAGCCCTGGCTGCATTTTAAGACCGTACTTGTGTGTCACCTCTCCTGAAATAGCTCAGAGTATGGACAGGAGATCCCTCTGGAAATCCCTAAACATTGACGAGTAGCACGTTTAGCATTGTGCCACATTGCCAACACAGTGGCATACTGCAGTTTTATAGCTAGTCCCAatctattctacacattttgccatgacgcGTGTGAATATTT

Function

NR:

description
GTPase-activating protein GYP7-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975414.1 True 2553 mRNA 0.49 9 14484922 14495193

Neighbor

gene id symbol gene type direction distance location
LOC110510729 LOC106578340 coding upstream 13891 14468093 ~ 14471031 (+)
LOC110510549 LOC106578340 coding upstream 42008 14431940 ~ 14442914 (+)
LOC118964341 NA coding upstream 77964 14406121 ~ 14406958 (+)
LOC110510776 LOC106578012 coding upstream 153612 14327225 ~ 14331310 (+)
LOC110510848 NA coding upstream 164199 14315597 ~ 14320723 (+)
LOC110510592 hsp70-3 coding downstream 151 14495344 ~ 14498631 (+)
LOC110510788 ctrl coding downstream 5266 14500459 ~ 14501779 (+)
si:dkey-42l23.2 cml1 coding downstream 11008 14506201 ~ 14508126 (+)
proser3 LOC106577938 coding downstream 16466 14511659 ~ 14519712 (+)
LOC110510370 LOC106605615 coding downstream 30512 14525705 ~ 14601609 (+)
G226807 LOC106578340 non-coding upstream 95081 14389198 ~ 14390428 (+)
G226797 NA non-coding upstream 113844 14367459 ~ 14371078 (+)
G226793 NA non-coding upstream 124144 14360504 ~ 14360778 (+)
G226774 NA non-coding upstream 171298 14313355 ~ 14313624 (+)
G226845 LOC107675859 non-coding downstream 27988 14523181 ~ 14524514 (+)
G226889 LOC106577926 non-coding downstream 123747 14618940 ~ 14623217 (+)
G226931 NA non-coding downstream 191011 14686204 ~ 14686513 (+)
G226935 NA non-coding downstream 194457 14689650 ~ 14689945 (+)
G226902 NA non-coding downstream 199423 14694616 ~ 14747965 (+)
G226791 NA other upstream 74841 14408872 ~ 14410081 (+)
LOC110510822 smg9 other upstream 205067 14278350 ~ 14284963 (+)
G225920 NA other upstream 438074 14046586 ~ 14046848 (+)
LOC110503682 trp-iii other upstream 480996 14001152 ~ 14003950 (+)
G226941 NA other downstream 208408 14703601 ~ 14703975 (+)
LOC118944476 LOC106605624 other downstream 446957 14942150 ~ 14984145 (+)
LOC110510950 LOC106605624 other downstream 495327 14984771 ~ 14991394 (+)
G227405 NA other downstream 501966 14997159 ~ 14998075 (+)
LOC110511049 LOC106605627 other downstream 577951 15072005 ~ 15095913 (+)

Expression


Co-expression Network