LOC118944476 (LOC106605624)


Basic Information

Item Value
gene id LOC118944476
gene name LOC106605624
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14942150 ~ 14984145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118944476
TTCTGTCCTGTGGATCAGAATGGGGAGGTGATTTCCACCAGCTGGGAGGTGGACACAGAGTCGCGACGGGCCATCAGCCACCTGACCCTGCAGGTTAAACCACAGGACAACCAGGCCGAGCTGCACTGTGAAAGTGTCAACCAGGTGACCCCTGTCCCTCTGTCCGACAGCCTCAAGATCACTGTCCTCTTTGAGCCAAAGAAGGTGATGGTGCTGGGGTCGTTCGAggcaagagagggggaggaggtgaccCTGTGCTGTTAAACCTATACCAGTAACCCACCTGTACACATCCGCTGGTGGCTGGGCTTCAGGGAACTCAACACCACCGTGGTAAATGTGGAAGAGGGAGACCACGGGGGGAAGACAACCATGTCTAACCCATGTTGTCTCTCGGGAGGAGAACGGGCTGCCCCTCACCTGTGAGACCTTCAGCAATGGCACACGCTTCTCCAAGAGCCAGTCCAACAACCTCATTGTTTTCTACCCTCCTCAGAAGGTGTGGATAGAAGCCCCTCCCCCAGGGGTTCCTCTGAGCTCAGGGACCATCATACGCCTCATCTGCTTCTCTAGTGGGGGAAGCCCCAAAGGAACCATTAACTGtCCCTGCAGTGAGTGTGACAATCGAAGCCAAGCAGAAAGAGCTGCGTCGGGGCCAAAACCTCAGCCTGGACTGCCTGTCTGGGAGCAGCAACCCCCAGGCCAACATCTCCTGGAGCCTGGGcccaaccagGCTCTTAGGAACACAATGTTTGGTGATGTGTCAGTAAGCAGTACTCTgtccctccccctgtcctcccagCACCAAGGCCAGAGGATCACCTGTCAGGCCTACAGCTCTCTGCTGTCTGAGGGAGTCAACACCTTCTTCAAGTGTAATTGTACTTTCATATTGTTTCTCTCGTCCTACTTTCTAATTGTCTACTCCCCAGATGCCCCTAGTGTGAAGATGGAGAATGACCCAGTGTATGTGCACGTGGGGGAGACAGCAGACCTGTTTTGTGTAGGAGATGCAAACCCCATCATCAACACTGACATGTTTTCCTGGAAATGGCTGggtgagggggagatggaggagatgggggagcAGATCCAGGATGAGGCCACTGGGCAGCTGACCATCCAAGGGGCGACTCAGGTCAACGCCGGTCGCTACCAGTGCACTGCCAACAACAACATAGCGCCCCCTGCCAGCGTGGCAGTCCAGCTGGTGGTGCGCTGTGTGTCTAACGAGCTCTACCAAGATCTGTCAATCATGTCGTGTGAATACATCATGGGTGCAACGGAGTGGAAAAGCGTTGTATATTTTAAGCCGGAGCTCCAGAAGGGGGCTCAGTGGAATAAGGTGGCGAGCAGAGGGGATAGCACCAGAACAGCAGAGGTGGTGTGCCAGGGAGAGGGCATCCCTCAGCTCCACTTCTCCTGGGCTTCTCCTGCCTGCCCTATAGccatattgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtactggcagctcttggctgactgacagct
>TU260071
tctctctctacaccataTTAAACAACATCTTTCCACAGTAAGACCTAATGTAGTCCTTACTCAGCACGCCAGCCCATCAAAGCCTGGAGCACCGTGTCCGTTTTCAGTCAGACAGATTGTTAGTGAGGTAGCAATTTGTCACGCCGGCCCAGGGTCCACATACAGCCGCCTGCACTGCCTGCGTACCCAAACTCATTGCAGCAATAACAAAGGCTGGCCCTCCCCTAATTTATTTTACGCTGTATATTTTATTCAGGGAGGCTGTAATTTATTCATATTTCCAAACGTTACTTTATTACTGTTTAAACATCTGTTATTTTGCTTTATGGAGTCGATCTAGCTGGCTGCTCCCTTAATACTTAATGCTTTCATCAGAGCTAGAGCCCTTACTCTGCAGTCAGGATAAATGTTGCCAATTTATTGGCCCTGTCTCAACAAATAGAAAGGATGCTCCCTTGCTCATAAAGCCAAGTGTCCGCTCATCCCAGTGCATATTTCTcaccctctctattctctctttctgtcatcttCTCTGTTTCTGGtgcttcatctctccctctctctttctattgctgcctctcttcctctctcctcactttctGCCGTTCTTTCCCAAGATGttacttcatctctctctttccctctcaacaTCAGTCCCACCCCAGCATCCAGTAATCCAGGGTCTGGACAGAGAAGGCCCGGTGAAGAGGGGGACCATGTTGAAGCTGGTTTGTGTGTCCCAGGGAGGGAACCCACTGGCCACCCTACACTGGACCAAGATTCAGAGACTACACTCGGCTAAAGCTTAGAATCAGTAGTTcttggtgttttctccatcttctagttctttactctctctttcagaACTCACTCCCTTCCTActgcagccagtcagtcacctaTTATGTTAGTGAATAACCCATAGCCCTGTCCTGTCTGCTTTTTACTAACTCATAATTCTGTCCTGTGGATCAGAATGGGGAGGTGATTTCCACCAGCTGGGAGGTGGACACAGAGTCGCGACGGGCCATCAGCCACCTGACCCTGCAGGTTAAACCACAGGACAACCAGGCCGAGCTGCACTGTGAAAGTGTCAACCAGGTGACCCCTGTCCCTCTGTCCGACAGCCTCAAGATCACTGTCCTCTTTGAGCCAAAGAAGGTGATGGTGCTGGGGTCGTTCGAggcaagagagggggaggaggtgaccCTGTGCTGTTAAACCTATACCAGTAACCCACCTGTACACATCCGCTGGTGGCTGGGCTTCAGGGAACTCAACACCACCGTGGTAAATGTGGAAGAGgtcgcagttgtacatGTAACGGTCGTCTGAtgaggaaggatcggaccaaagcgcagcgtgGGAGACCACGGGGGGAAGACAACCATGTCTAACCCATGTTGTCTCTCGGGAGGAGAACGGGCTGCCCCTCACCTGTGAGACCTTCAGCAATGGCACACGCTTCTCCAAGAGCCAGTCCAACAACCTCATTGTTTTCTACCCTCCTCAGAAGGTGTGGATAGAAGCCCCTCCCCCAGGGGTTCCTCTGAGCTCAGGGACCATCATACGCCTCATCTGCTTCTCTAGTGGGGGAAGCCCCAAAGGAACCATTAACTGtCCCTGCAGTGAGTGTGACAATCGAAGCCAAGCAGAAAGAGCTGCGTCGGGGCCAAAACCTCAGCCTGGACTGCCTGTCTGGGAGCAGCAACCCCCAGGCCAACATCTCCTGGAGCCTGGGcccaaccagCACCAAGGCCAGAGGATCACCTGTCAGGCCTACAGCTCTCTGCTGTCTGAGGGAGTCAACACCTTCTTCAAG
>TU260073
aggtcgcagttgtacatGTAACGGTCGTCTGAtgaggaaggatcggaccaaagcgcagcgtgGGAGACCACGGGGGGAAGACAACCATGTCTAACCCATGTTGTCTCTCGGGAGGAGAACGGGCTGCCCCTCACCTGTGAGACCTTCAGCAATGGCACACGCTTCTCCAAGAGCCAGTCCAACAACCTCATTGTTTTCTACCCTCCTCAGAAGGTGTGGATAGAAGCCCCTCCCCCAGGGGTTCCTCTGAGCTCAGGGACCATCATACGCCTCATCTGCTTCTCTAGTGGGGGAAGCCCCAAAGGAACCATTAACTGGTACagagtgtgtacatgtgtgtattgt
>TU260074
CCTcgttctctccctacctctcaccCTGCCTCCTGTGTGAATTCAGTCTTTTTTTGATATTGGTGGACGCCGCTTCTCtacaggtttttattttatttgcactGCTGTCGCCTTTCATGGCTGACATGGTTTCTTCGTGTCTGGGTTTGTGTGTTTTtctccctttgtgtgtgtgtgtgtgtgtcagatcccCCAGAGTTCAGCCCTGACCATCCCCAGAAGATACAGGTAGTGGAGGATGAGACAGCCATTCTTCCCTTGCCAACATCTCCTGCAGTTGGCTCTACCGCAAGGAGGAGCTGCACAAAGACGTAGTTTCCTCAGGGTGCCCGCACATCAGCCTCGCTTCTTTTCCGTGTCTCGTGGATCAGGGCCCGGTCCAAGGTGAGCACTATGTCCTGCGCCTACGAatcgttgaagtagaaatcttcatccaaatTGAGGTTAGTGATCACTGGACTGATGGAAACATTCTGTACAAATGACGTAAATGTGGGTCGCTATTTTTCTGAATACATCACAGCCGTTCCTCTCCTGGTCTACCCTCTATTCCCTGTCATCGGGCCACAGCCACCACACTCCTGTCCCTAACCTCCCACCTCAACCTCCACCACCGCACCATCCTCCCAGAGGGGTTACCCAGCCATTAAAGGAGAGATGTTGCGGTACAGTGGTGGTCTGGGCTATTGTTTCTGTGGGAATATTGCCAGGCCAATCAATAATCTAAGCATTAGATGTCACGTATAAGCCATGAGTGgcttaggggtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatgaacaGAAATGCATCCTCGGTACCACTTTACTGAGAGCACAGAGTTTGAGATCTGGAATGTGACAAGGCGAGACACCGGGGTCTACACTGTGAACTGTACCAACGAGGTGGGGTTTGACAATACCATCATCACTCTGGACGTACAGTGTAAGTCTGACCCACTGGCGTTGAATCTGGTTTGTCTACTCACCTCAacactgtgttagcccactgagctcaAGTCTAGGCATTAGCTCAGGGACTGAACACAAGTCTTCAGGACTTGGGCAAGGTTTCTCAGTCCTCACGCAAGTGTGGTTCATCAAGCCACTTACATTACATGCCAGTGTTGTACACCCAATACAACCCCAATCCTGTCACAACCTTGAACCAACCGACCGACACATCTCCATCCCACTGCCTCCACTCTTAATGATGTAATAATAGCAGGTCTGAATGTTCCAGTAAAACCTACAGTGCAGAATGAGCCTAATGGACAGACAGCACAGCGCTGTCCTGATCCGATGGAACCTGACAGTTGAAGGTATCCATAATGTATAGAGGATTGTAATAGCTTTTATGGGTGGCACTGTAGCCCACTTAACAATGTTGTTCCTGGTTGAAATTAATGTGGTATGTGAGAAGGCCGTAAGTGTCACTGGTGATTCCATCAGTGTGCTGTGTGTATGAACACAGACGGGGGCGTTGGGACACTAATGCCACTACTGTTATAAGTAGATGGTACCCACAGGAAGAGAAGAGCACACAGCCAGGTGGAAAGGGATTACACTACAGTATGTTGATGGAGTCATAGTGCTGCTGTATCCAGGACATAGTGACTGACTGAAGGAGCGATGGAATGAGGGAAAGTGGGCCATGATGACTGCACCCTCCCTGCCTATGTCTCGCTCAAAGTTAAGGTAGGGGACAGGCAGCATGCAATGAAGAACCTCCAGCGTGACGTGGCCCAATTTACGGACACTGAATTGGGCAGGGGTGTTTGACAGTAGGGGGTTGGGACAGATCCAAAATATACTGGGGTTAAATTGATTGGCAAATATTTAATGTAAAGTGGTCAGAAAGGTAATtagttacagtatgtatagggTGTCTGTAGGATCAGTGAtgcatagaatagaatagaatagagtggaatataatacaatataatggaatagattagaatgGAATAAAATACAATATAATTAATATATTTGCAGAGAGAGTTGGGAGTTGGTGGGTGGTGAGTGACTGATTGTTCCCTAAGTTCCAAAGTAGAATTGTACTTTCATATTGTTTCTCTCGTCCTACTTTCTAATTGTCTACTCCCCAGATGCCCCTAGTGTGAAGATGGAGAATGACCCAGTGTATGTGCACGTGGGGGAGACAGCAGACCTGTTTTGTGTAGGAGATGCAAACCCCATCATCAACACTGACATGTTTTCCTGGAAATGGCTGG

Function

NR:

description
LOW QUALITY PROTEIN: nephrin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118944476 False 1551 mRNA 0.47 9 14943107 14984145
TU260071 False 1822 TUCP 0.42 7 14942150 14974977
TU260073 False 345 lncRNA 0.54 3 14967957 14971287
TU260074 True 2331 lncRNA 0.46 2 14975592 14983055

Neighbor

gene id symbol gene type direction distance location
LOC110510982 NA coding upstream 1235 14919599 ~ 14941872 (+)
LOC110510471 LOC106577854 coding upstream 165954 14743721 ~ 14777153 (+)
LOC110503699 NA coding upstream 311945 14628884 ~ 14631162 (+)
LOC110510370 LOC106605615 coding upstream 341498 14525705 ~ 14601609 (+)
proser3 LOC106577938 coding upstream 423395 14511659 ~ 14519712 (+)
LOC110510950 LOC106605624 coding downstream 626 14984771 ~ 14991394 (+)
LOC110510993 fxyd5a coding downstream 14531 14998676 ~ 15022578 (+)
LOC110511152 NA coding downstream 71685 15055830 ~ 15061264 (+)
LOC118944484 NA coding downstream 79934 15064079 ~ 15066323 (+)
LOC110511049 LOC106605627 coding downstream 87860 15072005 ~ 15095913 (+)
G227369 NA non-coding upstream 15359 14927508 ~ 14927748 (+)
G227354 NA non-coding upstream 26806 14916052 ~ 14916301 (+)
G227333 NA non-coding upstream 46786 14896033 ~ 14896321 (+)
G227323 NA non-coding upstream 53362 14889378 ~ 14889745 (+)
G226902 NA non-coding upstream 195142 14694616 ~ 14747965 (+)
G227489 NA non-coding downstream 59518 15043663 ~ 15043953 (+)
G227492 NA non-coding downstream 60802 15044947 ~ 15045254 (+)
LOC110511142 fxyd7 non-coding downstream 112580 15096725 ~ 15102227 (+)
tyrobp tyrobp non-coding downstream 131882 15115857 ~ 15132280 (+)
G227569 NA non-coding downstream 163622 15147767 ~ 15147995 (+)
G226941 NA other upstream 239132 14703601 ~ 14703975 (+)
G226791 NA other upstream 533026 14408872 ~ 14410081 (+)
G226807 LOC106578340 other upstream 552679 14389198 ~ 14390428 (+)
LOC110510822 smg9 other upstream 663252 14278350 ~ 14284963 (+)
G225920 NA other upstream 896259 14046586 ~ 14046848 (+)
G227405 NA other downstream 13014 14997159 ~ 14998075 (+)
G227606 NA other downstream 259801 15243946 ~ 15244282 (+)
zgc:162160 LOC106605640 other downstream 704198 15672260 ~ 15697397 (+)

Expression


Co-expression Network