LOC110510950 (LOC106605624)


Basic Information

Item Value
gene id LOC110510950
gene name LOC106605624
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14984771 ~ 14991394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969876.1
ccggggacaccgtgcgctccaccgcataacacggtgcctgcccggtccctctcgctctccgcttccatctctctctctaacacacagatcaaCCAGATCCTCCCTCAGAGATCTGCCTGGTCAGCTTCACCCATGCCTCTGCAACTCTAGAATGGATCCCAGGCTTCGATGGGGGATTGGAGCAGAGATTCCATATCAGCTACCATTGGGAGCAAACATCTTCATTGTGACAGGCCTGTCCCCCGCCACTACATACAACTTTTCTATCAACGCACTCAACTCCATGGGAGAGAGCGGCTATGCAGACAACAACTCAGTACACACCATCACCAGCGAGGAGTGGGAAGGAGCAATCCAGGAAGAAGATCCCTTTGGGGAGGACACGAGAGGGTTGTCGCTGTATCAGACTGTGATCATGGCGGTGGTTGGTGGggctctgctgctggctctcaaCTGGCTGGGCTGCTTTCTGTGTCTGAGGTGGAAGAAGAGGCGTGGCCAGACAGaGAGTAAAGGCAGTGTTTCAGATGGGAAGAAGAGTGAAGGTAATGGGTTCACTGTGTTCACTGCCAGCGGCTCCACCAGGTACGAGGTCAGAGGGCTGGTGAACCCTGCGGGTTCATCGACAGCGGGTCAGAACCAGACAGCAGCGTATATGGGTGCTATGCTGGGGAGAGCtcccactactactaccccaCCAGTGACTActgcccctctctctacccccaccccgagGGAGCACAAGGGCAAGATGGCCGCCACTACCCACTGGAGGCCATAGGCCATGAGTATGAGGAGGTGAGAGACTGGGGCATGTATCAGGACATGCTGTATCAGGACATGCTGGGGTtgtctctcccactgtctccttCCCAGTTTGACCCCTGGTTACCAGAGCAGAGGCGAGAGTGGAGACCACCCCCACCCAGTTACCCTCAGGGAAGTGGGAGGGACATGATTGCCCTGCAGCAGCCAATCAGAAGGAAGAATCCGGTGGATGAGCGATGCCCAGAGAGAAGCGACTATGATTTACCTTTTGAGCTCAGAGGACAGTTAGTTTAGGAAGCTTAGGCCTTGATTCCAGACTGTGGACAATACCTCAGACTCAAATACAACCTCTTAGTGCTGTGTTGGTATTGAGTACAATATGAATAGGAAGCCTTCCAACTGTTACTACCAAAaggtacagtatttacagtaggtGATATTGTGGGACAGTCAATCAATACAAATTAGGCCTACCATCGATCCAAAGACCTCAAAGATATAAAATGTAAAAGATGAAGCAACTAAACATGCAGAGTTTTTCGTACATATTTTCTAGTAACAGTTGattatactctactgtacaaATAAAATGGATAATCTAGGCCTAGGCCCAACTGA
>XM_036969882.1
tacatttttggggctgcctctcgggcttccagccacaccgccgtgctagctcctcataatgccatctctCTGCTTtcactgcctccagctctgctttggggagGCAATTTTCTCCTGGCTGTTCGCAGGGTCCTTTACCGTtcaaaatctcctcccaagtccatttctccaaatatcgctgcctctcctgctgctgctgctgctgcctgttaccacgctgcttggtcctcggttggtgggtgtttctgtagcGGCTGTCTTGGGTAGAAGAAgcagaggaccaaagcgcagcgtgatcaaCCAGATCCTCCCTCAGAGATCTGCCTGGTCAGCTTCACCCATGCCTCTGCAACTCTAGAATGGATCCCAGGCTTCGATGGGGGATTGGAGCAGAGATTCCATATCAGCTACCATTGGGAGCAAACATCTTCATTGTGACAGGCCTGTCCCCCGCCACTACATACAACTTTTCTATCAACGCACTCAACTCCATGGGAGAGAGCGGCTATGCAGACAACAACTCAGTACACACCATCACCAGCGAGGAGTGGGAAGGAGCAATCCAGGAAGAAGATCCCTTTGGGGAGGACACGAGAGGGTTGTCGCTGTATCAGACTGTGATCATGGCGGTGGTTGGTGGggctctgctgctggctctcaaCTGGCTGGGCTGCTTTCTGTGTCTGAGGTGGAAGAAGAGGCGTGGCCAGACAGaGAGTAAAGGCAGTGTTTCAGATGGGAAGAAGAGTGAAGGTAATGGGTTCACTGTGTTCACTGCCAGCGGCTCCACCAGGTACGAGGTCAGAGGGCTGGTGAACCCTGCGGGTTCATCGACAGCGGGTCAGAACCAGACAGCAGCGTATATGGGTGCTATGCTGGGGAGAGCtcccactactactaccccaCCAGTGACTActgcccctctctctacccccaccccgagGGAGCACAAGGGCAAGATGGCCGCCACTACCCACTGGAGGCCATAGGCCATGAGTATGAGGAGGTGAGAGACTGGGGCATGTATCAGGACATGCTGTATCAGGACATGCTGGGGTtgtctctcccactgtctccttCCCAGTTTGACCCCTGGTTACCAGAGCAGAGGCGAGAGTGGAGACCACCCCCACCCAGTTACCCTCAGGGAAGTGGGAGGGACATGATTGCCCTGCAGCAGCCAATCAGAAGGAAGAATCCGGTGGATGAGCGATGCCCAGAGAGAAGCGACTATGATTTACCTTTTGAGCTCAGAGGACAGTTAGTTTAGGAAGCTTAGGCCTTGATTCCAGACTGTGGACAATACCTCAGACTCAAATACAACCTCTTAGTGCTGTGTTGGTATTGAGTACAATATGAATAGGAAGCCTTCCAACTGTTACTACCAAAaggtacagtatttacagtaggtGATATTGTGGGACAGTCAATCAATACAAATTAGGCCTACCATCGATCCAAAGACCTCAAAGATATAAAATGTAAAAGATGAAGCAACTAAACATGCAGAGTTTTTCGTACATATTTTCTAGTAACAGTTGattatactctactgtacaaATAAAATGGATAATCTAGGCCTAGGCCCAACTGA
>XM_036969904.1
tacatttttggggctgcctctcgggcttccagccacaccgccgtgctagctcctcataatgccatctctCTGCTTtcactgcctccagctctgctttggggagGCAATTTTCTCCTGGCTGTTCGCAGGGTCCTTTACCGTtcaaaatctcctcccaagtccatttctccaaatatcgctgcctctcctgctgctgctgctgctgcctgttaccacgctgcttggtcctcggttggtgggtgtttctgtagcGGCTGTCTTGGGTAGAAGAAgcagaggaccaaagcgcagcgtgatcaaCCAGATCCTCCCTCAGAGATCTGCCTGGTCAGCTTCACCCATGCCTCTGCAACTCTAGAATGGATCCCAGGCTTCGATGGGGGATTGGAGCAGAGATTCCATATCAGGTTAGAGTCCATCCATGTACTGACTAAGATGCTGTTGATTGACAGCTACCATTGGGAGCAAACATCTTCATTGTGACAGGCCTGTCCCCCGCCACTACATACAACTTTTCTATCAACGCACTCAACTCCATGGGAGAGAGCGGCTATGCAGACAACAACTCAGTACACACCATCACCAGCGAGGAGTGGGAAGGAGCAATCCAGGAAGAAGATCCCTTTGGGGAGGACACGAGAGGGTTGTCGCTGTATCAGACTGTGATCATGGCGGTGGTTGGTGGggctctgctgctggctctcaaCTGGCTGGGCTGCTTTCTGTGTCTGAGGTGGAAGAAGAGGCGTGGCCAGACAGaGAGTAAAGGCAGTGTTTCAGATGGGAAGAAGAGTGAAGGTAATGGGTTCACTGTGTTCACTGCCAGCGGCTCCACCAGGTACGAGGTCAGAGGGCTGGTGAACCCTGCGGGTTCATCGACAGCGGGTCAGAACCAGACAGCAGCGTATATGGGTGCTATGCTGGGGAGAGCtcccactactactaccccaCCAGTGACTActgcccctctctctacccccaccccgagGGAGCACAAGGGCAAGATGGCCGCCACTACCCACTGGAGGCCATAGGCCATGAGTATGAGGAGGTGAGAGACTGGGGCATGTATCAGGACATGCTGTATCAGGACATGCTGGGGTtgtctctcccactgtctccttCCCAGTTTGACCCCTGGTTACCAGAGCAGAGGCGAGAGTGGAGACCACCCCCACCCAGTTACCCTCAGGGAAGTGGGAGGGACATGATTGCCCTGCAGCAGCCAATCAGAAGGAAGAATCCGGTGGATGAGCGATGCCCAGAGAGAAGCGACTATGATTTACCTTTTGAGCTCAGAGGACAGTTAGTTTAGGAAGCTTAGGCCTTGATTCCAGACTGTGGACAATACCTCAGACTCAAATACAACCTCTTAGTGCTGTGTTGGTATTGAGTACAATATGAATAGGAAGCCTTCCAACTGTTACTACCAAAaggtacagtatttacagtaggtGATATTGTGGGACAGTCAATCAATACAAATTAGGCCTACCATCGATCCAAAGACCTCAAAGATATAAAATGTAAAAGATGAAGCAACTAAACATGCAGAGTTTTTCGTACATATTTTCTAGTAACAGTTGattatactctactgtacaaATAAAATGGATAATCTAGGCCTAGGCCCAACTGA
>XM_036969899.1
atctctctctctaacacacagatcaaCCAGATCCTCCCTCAGAGATCTGCCTGGTCAGCTTCACCCATGCCTCTGCAACTCTAGAATGGATCCCAGGCTTCGATGGGGGATTGGAGCAGAGATTCCATATCAGGTTAGAGTCCATCCATGTACTGACTAAGATGCTGTTGATTGACAGCTACCATTGGGAGCAAACATCTTCATTGTGACAGGCCTGTCCCCCGCCACTACATACAACTTTTCTATCAACGCACTCAACTCCATGGGAGAGAGCGGCTATGCAGACAACAACTCAGTACACACCATCACCAGCGAGGAGTGGGAAGGAGCAATCCAGGAAGAAGATCCCTTTGGGGAGGACACGAGAGGGTTGTCGCTGTATCAGACTGTGATCATGGCGGTGGTTGGTGGggctctgctgctggctctcaaCTGGCTGGGCTGCTTTCTGTGTCTGAGGTGGAAGAAGAGGCGTGGCCAGACAGaGAGTAAAGGCAGTGTTTCAGATGGGAAGAAGAGTGAAGGTAATGGGTTCACTGTGTTCACTGCCAGCGGCTCCACCAGGTACGAGGTCAGAGGGCTGGTGAACCCTGCGGGTTCATCGACAGCGGGTCAGAACCAGACAGCAGCGTATATGGGTGCTATGCTGGGGAGAGCtcccactactactaccccaCCAGTGACTActgcccctctctctacccccaccccgagGGAGCACAAGGGCAAGATGGCCGCCACTACCCACTGGAGGCCATAGGCCATGAGTATGAGGAGGTGAGAGACTGGGGCATGTATCAGGACATGCTGTATCAGGACATGCTGGGGTtgtctctcccactgtctccttCCCAGTTTGACCCCTGGTTACCAGAGCAGAGGCGAGAGTGGAGACCACCCCCACCCAGTTACCCTCAGGGAAGTGGGAGGGACATGATTGCCCTGCAGCAGCCAATCAGAAGGAAGAATCCGGTGGATGAGCGATGCCCAGAGAGAAGCGACTATGATTTACCTTTTGAGCTCAGAGGACAGTTAGTTTAGGAAGCTTAGGCCTTGATTCCAGACTGTGGACAATACCTCAGACTCAAATACAACCTCTTAGTGCTGTGTTGGTATTGAGTACAATATGAATAGGAAGCCTTCCAACTGTTACTACCAAAaggtacagtatttacagtaggtGATATTGTGGGACAGTCAATCAATACAAATTAGGCCTACCATCGATCCAAAGACCTCAAAGATATAAAATGTAAAAGATGAAGCAACTAAACATGCAGAGTTTTTCGTACATATTTTCTAGTAACAGTTGattatactctactgtacaaATAAAATGGATAATCTAGGCCTAGGCCCAACTGA
>XM_036969890.1
CAGACTGTGATCATGGCGGTGGTTGGTGGggctctgctgctggctctcaaCTGGCTGGGCTGCTTTCTGTGTCTGAGGTGGAAGAAGAGGCGTGGCCAGACAGgcTAATCAGCACCCAATCCAGTCCAGTGGGTAGAGACAAATGACTAACCGTCCAATCCCCTCTCAGAGGCCTAAACCCTGCCCTACTGACAGACCCCACGCAGGACCCACAACAGCAAAACTACAGGACCCTGTGATGGACAAAAGTCGCCTGGTTCACTGTGTTCACTGCCAGCGGCTCCACCAGGTACGAGGTCAGAGGGCTGGTGAACCCTGCGGGTTCATCGACAGCGGGTCAGAACCAGACAGCAGCGTATATGGGTGCTATGCTGGGGAGAGCtcccactactactaccccaCCAGTGACTActgcccctctctctacccccaccccgagGGAGCACAAGGGCAAGATGGCCGCCACTACCCACTGGAGGCCATAGGCCATGAGTATGAGGAGGTGAGAGACTGGGGCATGTATCAGGACATGCTGTATCAGGACATGCTGGGGTtgtctctcccactgtctccttCCCAGTTTGACCCCTGGTTACCAGAGCAGAGGCGAGAGTGGAGACCACCCCCACCCAGTTACCCTCAGGGAAGTGGGAGGGACATGATTGCCCTGCAGCAGCCAATCAGAAGGAAGAATCCGGTGGATGAGCGATGCCCAGAGAGAAGCGACTATGATTTACCTTTTGAGCTCAGAGGACAGTTAGTTTAGGAAGCTTAGGCCTTGATTCCAGACTGTGGACAATACCTCAGACTCAAATACAACCTCTTAGTGCTGTGTTGGTATTGAGTACAATATGAATAGGAAGCCTTCCAACTGTTACTACCAAAaggtacagtatttacagtaggtGATATTGTGGGACAGTCAATCAATACAAATTAGGCCTACCATCGATCCAAAGACCTCAAAGATATAAAATGTAAAAGATGAAGCAACTAAACATGCAGAGTTTTTCGTACATATTTTCTAGTAACAGTTGattatactctactgtacaaATAAAATGGATAATCTAGGCCTAGGCCCAACTGA
>XM_036969894.1
ggctctgctgctggctctcaaCTGGCTGGGCTGCTTTCTGTGTCTGAGGTGGAAGAAGAGGCGTGGCCAGACAGaGAGTAAAGGCAGTGTTTCAGATGGGAAGAAGAGTGAAGGTAATGGAGGCCTAAACCCTGCCCTACTGACAGACCCCACGCAGGACCCACAACAGCAAAACTACAGGACCCTGTGATGGACAAAAGTCGCCTGGTTCACTGTGTTCACTGCCAGCGGCTCCACCAGGTACGAGGTCAGAGGGCTGGTGAACCCTGCGGGTTCATCGACAGCGGGTCAGAACCAGACAGCAGCGTATATGGGTGCTATGCTGGGGAGAGCtcccactactactaccccaCCAGTGACTActgcccctctctctacccccaccccgagGGAGCACAAGGGCAAGATGGCCGCCACTACCCACTGGAGGCCATAGGCCATGAGTATGAGGAGGTGAGAGACTGGGGCATGTATCAGGACATGCTGTATCAGGACATGCTGGGGTtgtctctcccactgtctccttCCCAGTTTGACCCCTGGTTACCAGAGCAGAGGCGAGAGTGGAGACCACCCCCACCCAGTTACCCTCAGGGAAGTGGGAGGGACATGATTGCCCTGCAGCAGCCAATCAGAAGGAAGAATCCGGTGGATGAGCGATGCCCAGAGAGAAGCGACTATGATTTACCTTTTGAGCTCAGAGGACAGTTAGTTTAGGAAGCTTAGGCCTTGATTCCAGACTGTGGACAATACCTCAGACTCAAATACAACCTCTTAGTGCTGTGTTGGTATTGAGTACAATATGAATAGGAAGCCTTCCAACTGTTACTACCAAAaggtacagtatttacagtaggtGATATTGTGGGACAGTCAATCAATACAAATTAGGCCTACCATCGATCCAAAGACCTCAAAGATATAAAATGTAAAAGATGAAGCAACTAAACATGCAGAGTTTTTCGTACATATTTTCTAGTAACAGTTGattatactctactgtacaaATAAAATGGATAATCTAGGCCTAGGCCCAACTGA
>TU260067
CAAGATGGCCGCCACTACCCACTGGAGGCCATAGGCCATGAGTATGAGGAGGTGAGAGACTGGGGCATGTATCAGGACATGCTGTATCAGGACATGCTGGGGTtgtctctcccactgtctccttCCCAGTTTGACCCCTGGTTACCAGAGCAGAGGCGAGAGTGGAGACCACCCCCACCCAGTTACCCTCAGGGAAGTGGGAGGGACATGATTGCCCTGCAGCAGCCAATCAGAAGGAAGAATCCGGTGGATGAGCGATGCCCAGAGAGAAGCGACTATGATTTACCTTTTGAGCTCAGAGGACAGTTAGTTTAGGAAGCTTAGGCCTTGATTCCAGACTGTGGACAATACCTCAGACTCAAATACAACCTCTTAGTGCTGTGTTGGTATTGAGTACAATATGAATAGGAAGCCTTCCAACTGTTACTACCAAAaggtacagtatttacagtaggtGATATTGTGGGACAGTCAATCAATACAAATTAGGCCTACCATCGATCCAAAGACCTCAAAGATATAAAATGTAAAAGATGAAG

Function

NR:

description
nephrin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969876.1 False 1386 mRNA 0.52 10 14984771 14991394
XM_036969882.1 False 1594 mRNA 0.52 10 14984898 14991394
XM_036969904.1 False 1639 mRNA 0.51 10 14984898 14991394
XM_036969899.1 False 1365 mRNA 0.50 9 14986512 14991394
XM_036969890.1 False 1090 mRNA 0.51 6 14988120 14991394
XM_036969894.1 False 1041 mRNA 0.51 7 14988149 14991394
TU260067 True 539 TUCP 0.48 2 14990520 14991294

Neighbor

gene id symbol gene type direction distance location
LOC118944476 LOC106605624 coding upstream 626 14942150 ~ 14984145 (+)
LOC110510982 NA coding upstream 42899 14919599 ~ 14941872 (+)
LOC110510471 LOC106577854 coding upstream 207618 14743721 ~ 14777153 (+)
LOC110503699 NA coding upstream 353609 14628884 ~ 14631162 (+)
LOC110510370 LOC106605615 coding upstream 383162 14525705 ~ 14601609 (+)
LOC110510993 fxyd5a coding downstream 7282 14998676 ~ 15022578 (+)
LOC110511152 NA coding downstream 64436 15055830 ~ 15061264 (+)
LOC118944484 NA coding downstream 72685 15064079 ~ 15066323 (+)
LOC110511049 LOC106605627 coding downstream 80611 15072005 ~ 15095913 (+)
LOC110511142 fxyd7 coding downstream 107471 15096725 ~ 15102227 (+)
G227369 NA non-coding upstream 57023 14927508 ~ 14927748 (+)
G227354 NA non-coding upstream 68470 14916052 ~ 14916301 (+)
G227333 NA non-coding upstream 88450 14896033 ~ 14896321 (+)
G227323 NA non-coding upstream 95026 14889378 ~ 14889745 (+)
G227489 NA non-coding downstream 52269 15043663 ~ 15043953 (+)
G227492 NA non-coding downstream 53553 15044947 ~ 15045254 (+)
tyrobp tyrobp non-coding downstream 124633 15115857 ~ 15132280 (+)
G227569 NA non-coding downstream 156373 15147767 ~ 15147995 (+)
G226941 NA other upstream 280796 14703601 ~ 14703975 (+)
G226791 NA other upstream 574690 14408872 ~ 14410081 (+)
G226807 LOC106578340 other upstream 594343 14389198 ~ 14390428 (+)
LOC110510822 smg9 other upstream 704916 14278350 ~ 14284963 (+)
G227405 NA other downstream 5765 14997159 ~ 14998075 (+)
G227606 NA other downstream 252552 15243946 ~ 15244282 (+)
zgc:162160 LOC106605640 other downstream 696949 15672260 ~ 15697397 (+)
LOC118944532 NA other downstream 1522109 16477925 ~ 16515897 (+)

Expression


Co-expression Network