LOC110510993 (fxyd5a)


Basic Information

Item Value
gene id LOC110510993
gene name fxyd5a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14998676 ~ 15022578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592115.2
AGAACAAAAAGAAAGTGGGGAGGCCCACGTGTGAGAGCCAGCAAACAGAAAGagtgggtgagagaaaaaaaagtgcCGTGAGCAAGGGATGGAACGAGGAAGTCATGAGCAGAAGGGTGTGGTCGACTAACGGTTCTTAATGGTTcctgactgacacacagagaaAAGGGACTGTGGATACTGCACTGGAACGAGCTCTGGAACTAAGCGACAACTCAGGATGGACACCAAGATTCAGCTGAGCTGGATGGCAGTATCTCTGTTTCTCACACTACCAGGGTCCCTTGCTCAGAGCCCTACCACCACACACCCCAAAATGACTCTGGTGGCGAATGTTACTGCAGCTCCCTCTCCAGCCAGAACTGGTGCACCTACACATGCCTCCTGTCCTGTTGAGCTCAACCCTCCCAGAGTAGTAGTGAGATATGGAGAATCAGTCTCAGTCAACTGcaccacatccacagaccccGAGGGGATGGGGTGGGAGGCCACGTACGGAGATACAGGTTTGCATGGAAATGTCAACTTTGTCACCTGGACTGTGAAAAGACTCATGGACTGGACAATAGAACCTAAATGCTACATCAAGTCACAAAATGGAAGTCAGTGTACTGAGATTCTCCCTGTCATTCTCTACAAGACTCCAGACAGcgtgtctatctctcctctgagCCACTCTGGTCCAATGATGGAGGGGAAGGAGTACCAGCTGCAGTGCGACATCCAGAACATCGCTCCTCTACAGAACCTGGTTGTGAGGTGGTACAAAGGGAATGAAACTATAGAGACTCAAACGTTTAATGACTCCACAAAGGAACTAGTGAATATGTCCTCCACTATCACCATCACCCACAAGAGATATGAGGGTGAAGTAGAGTACAGATGTGAGGCAGAGCTGGACCTGGGACCAGAGGGACCAAAACCTTCTGCCTTGTCATCAAAACCTCTTTATGTTTACTGGTCCCTTGCTCAGAGCCCTACCACCACACACCCCAATCGACCGGTGGAAGTGACTCCCTCTCCAGACAGAACTGCTCACACAAACAAGTCAACAACACCCACGGCCAAGTCCTTAACCACCACAGtgACACCATCTCCAACCACCTCTGAGAATACCGCCGTCGTTTCTCCTGTTGCCTGGGATTCAAAGTGGGATGAACCATTCAATTATGACTACTACTTCCTCCGTGTTGTTGGTCTGTCTATGGCCGCAGCACTCTTCATCCTGGGTATTATGGTCATTAGCTGTGGTAAAGTATGCCGGATGCCTAGGTGTCATGTGGGCACAGGGAAGTCGTACCAAGTGTCCAGAGAGTAGTGAGGGGACAAACGTGTTACTGAGTGGCCTCAAGACACCAGAAGAGTTCATCAGAGGGACATGGAGAAACAACACTGATACAACATATTAtcgaccatgtgtgtgtgtatgtttgagtttgagtttattttatttttacagggacagtgcacattatgtgtgtgtgaaaACGTTGTTGGACAAAACTCTGCGTCTGTCATTTCAGAGATGAGAACGTGATATGTGTTTCATGTGCCTTTCCCACAGACTGCAAGTGACTCACTCAACATTATGAAattacccctccctcactcttctAAAGACTTACCTGTAGTTTTAAATGCAAGTTTTATTATACTTTGGCACTCATGTTTCTATGTATATTTTGAAATGCTTACAAAATGTTACAGaatacatactgtagatgttACGTAGCTCAGAGGCGCCCCCAAGAGCACTGGAAGAGGTACTGATCCTTTTTTTTCTCATATCCCAGAGACAGCAATTTCATGCCTAGCTTTTCACAGATCATTGTGTAGATTTTATCTGTAGATTTGTCACCAACTTGAATTATATTTTCTCTAATAAATCACATACATGTCCTGTT
>XM_036969933.1
AGAACAAAAAGAAAGTGGGGAGGCCCACGTGTGAGAGCCAGCAAACAGAAAGagtgggtgagagaaaaaaaagtgcCGTGAGCAAGGGATGGAACGAGGAAGTCATGAGCAGAAGGGTGTGGTCGACTAACGGTTCTTAATGGTTcctgactgacacacagagaaAAGGGACTGTGGATACTGCACTGGAACGAGCTCTGGAACTAAGCGACAACTCAGGATGGACACCAAGATTCAGCTGAGCTGGATGGCAGTATCTCTGTTTCTCACACTACCAGGGTCCCTTGCTCAGAGCCCTACCACCACACACCCCAAAATGACTCTGGTGGCGAATGTTACTGCAGCTCCCTCTCCAGCCAGAACTGGTGCACCTACACATGCCTCCTGTCCTGTTGAGCTCAACCCTCCCAGAGTAGTAGTGAGATATGGAGAATCAGTCTCAGTCAACTGcaccacatccacagaccccGAGGGGATGGGGTGGGAGGCCACGTACGGAGATACAGGTTTGCATGGAAATGTCAACTTTGTCACCTGGACTGTGAAAAGACTCATGGACTGGACAATAGAACCTAAATGCTACATCAAGTCACAAAATGGAAGTCAGTGTACTGAGATTCTCCCTGTCATTCTCTACAAGACTCCAGACAGcgtgtctatctctcctctgagCCACTCTGGTCCAATGATGGAGGGGAAGGAGTACCAGCTGCAGTGCGACATCCAGAACATCGCTCCTCTACAGAACCTGGTTGTGAGGTGGTACAAAGGGAATGAAACTATAGAGACTCAAACGTTTAATGACTCCACAAAGGAACTAGTGAATATGTCCTCCACTATCACCATCACCCACAAGAGATATGAGGGTGAAGTAGAGTACAGATGTGAGGCAGAGCTGGACCTGGGACCAGAGGGACCAAAACCTTCTGCCTTGTCATCAAAACCTCTTTATGTTTACTGGTCCCTTGCTCAGAGCCCTACCACCACACACCCCAATCGACCGGTGGAAGTGACTCCCTCTCCAGACAGAACTGCTCACACAAACAAGTCAACAACACCCACGGCCAAGTCCTTAACCACCACAGATTCAAAGTGGGATGAACCATTCAATTATGACTACTACTTCCTCCGTGTTGTTGGTCTGTCTATGGCCGCAGCACTCTTCATCCTGGGTATTATGGTCATTAGCTGTGGTAAAGTATGCCGGATGCCTAGGTGTCATGTGGGCACAGGGAAGTCGTACCAAGTGTCCAGAGAGTAGTGAGGGGACAAACGTGTTACTGAGTGGCCTCAAGACACCAGAAGAGTTCATCAGAGGGACATGGAGAAACAACACTGATACAACATATTAtcgaccatgtgtgtgtgtatgtttgagtttgagtttattttatttttacagggacagtgcacattatgtgtgtgtgaaaACGTTGTTGGACAAAACTCTGCGTCTGTCATTTCAGAGATGAGAACGTGATATGTGTTTCATGTGCCTTTCCCACAGACTGCAAGTGACTCACTCAACATTATGAAattacccctccctcactcttctAAAGACTTACCTGTAGTTTTAAATGCAAGTTTTATTATACTTTGGCACTCATGTTTCTATGTATATTTTGAAATGCTTACAAAATGTTACAGaatacatactgtagatgttACGTAGCTCAGAGGCGCCCCCAAGAGCACTGGAAGAGGTACTGATCCTTTTTTTTCTCATATCCCAGAGACAGCAATTTCATGCCTAGCTTTTCACAGATCATTGTGTAGATTTTATCTGTAGATTTGTCACCAACTTGAATTATATTTTCTCTAATAAATCACATACATGTCCTGTT
>XM_036969938.1
AGAACAAAAAGAAAGTGGGGAGGCCCACGTGTGAGAGCCAGCAAACAGAAAGagtgggtgagagaaaaaaaagtgcCGTGAGCAAGGGATGGAACGAGGAAGTCATGAGCAGAAGGGTGTGGTCGACTAACGGTTCTTAATGGTTcctgactgacacacagagaaAAGGGACTGTGGATACTGCACTGGAACGAGCTCTGGAACTAAGCGACAACTCAGGATGGACACCAAGATTCAGCTGAGCTGGATGGCAGTATCTCTGTTTCTCACACTACCAGGGTCCCTTGCTCAGAGCCCTACCACCACACACCCCAAAATGACTCTGGTGGCGAATGTTACTGCAGCTCCCTCTCCAGCCAGAACTGGTGCACCTACACATGCCTCCTGTCCTGTTGAGCTCAACCCTCCCAGAGTAGTAGTGAGATATGGAGAATCAGTCTCAGTCAACTGcaccacatccacagaccccGAGGGGATGGGGTGGGAGGCCACGTACGGAGATACAGGTTTGCATGGAAATGTCAACTTTGTCACCTGGACTGTGAAAAGACTCATGGACTGGACAATAGAACCTAAATGCTACATCAAGTCACAAAATGGAAGTCAGTGTACTGAGATTCTCCCTGTCATTCTCTACAAGACTCCAGACAGcgtgtctatctctcctctgagCCACTCTGGTCCAATGATGGAGGGGAAGGAGTACCAGCTGCAGTGCGACATCCAGAACATCGCTCCTCTACAGAACCTGGTTGTGAGGTGGTACAAAGGGAATGAAACTATAGAGACTCAAACGTTTAATGACTCCACAAAGGAACTAGTGAATATGTCCTCCACTATCACCATCACCCACAAGAGATATGAGGGTGAAGTAGAGTACAGATGTGAGGCAGAGCTGGACCTGGGACCAGAGGGACCAAAACCTTCTGCCTTGTCATCAAAACCTCTTTATGTTTACTGGTCCCTTGCTCAGAGCCCTACCACCACACACCCCAATCGACCGGTGGAAGTGACTCCCTCTCCAGACAGAACTGATTCAAAGTGGGATGAACCATTCAATTATGACTACTACTTCCTCCGTGTTGTTGGTCTGTCTATGGCCGCAGCACTCTTCATCCTGGGTATTATGGTCATTAGCTGTGGTAAAGTATGCCGGATGCCTAGGTGTCATGTGGGCACAGGGAAGTCGTACCAAGTGTCCAGAGAGTAGTGAGGGGACAAACGTGTTACTGAGTGGCCTCAAGACACCAGAAGAGTTCATCAGAGGGACATGGAGAAACAACACTGATACAACATATTAtcgaccatgtgtgtgtgtatgtttgagtttgagtttattttatttttacagggacagtgcacattatgtgtgtgtgaaaACGTTGTTGGACAAAACTCTGCGTCTGTCATTTCAGAGATGAGAACGTGATATGTGTTTCATGTGCCTTTCCCACAGACTGCAAGTGACTCACTCAACATTATGAAattacccctccctcactcttctAAAGACTTACCTGTAGTTTTAAATGCAAGTTTTATTATACTTTGGCACTCATGTTTCTATGTATATTTTGAAATGCTTACAAAATGTTACAGaatacatactgtagatgttACGTAGCTCAGAGGCGCCCCCAAGAGCACTGGAAGAGGTACTGATCCTTTTTTTTCTCATATCCCAGAGACAGCAATTTCATGCCTAGCTTTTCACAGATCATTGTGTAGATTTTATCTGTAGATTTGTCACCAACTTGAATTATATTTTCTCTAATAAATCACATACATGTCCTGTT
>XM_036969928.1
aacgtgtggTGGATGTTCGAGATTGACAGACGGACGGTCAAACAGCCTAGATACACAGAAAGATAACACAGACaatgATTCAGCTGAGCTGGATGGCAGTATCTCTGTTTCTCACACTACCAGGGTCCCTTGCTCAGAGCCCTACCACCACACACCCCAAAATGACTCTGGTGGCGAATGTTACTGCAGCTCCCTCTCCAGCCAGAACTGGTGCACCTACACATGCCTCCTGTCCTGTTGAGCTCAACCCTCCCAGAGTAGTAGTGAGATATGGAGAATCAGTCTCAGTCAACTGcaccacatccacagaccccGAGGGGATGGGGTGGGAGGCCACGTACGGAGATACAGGTTTGCATGGAAATGTCAACTTTGTCACCTGGACTGTGAAAAGACTCATGGACTGGACAATAGAACCTAAATGCTACATCAAGTCACAAAATGGAAGTCAGTGTACTGAGATTCTCCCTGTCATTCTCTACAAGACTCCAGACAGcgtgtctatctctcctctgagCCACTCTGGTCCAATGATGGAGGGGAAGGAGTACCAGCTGCAGTGCGACATCCAGAACATCGCTCCTCTACAGAACCTGGTTGTGAGGTGGTACAAAGGGAATGAAACTATAGAGACTCAAACGTTTAATGACTCCACAAAGGAACTAGTGAATATGTCCTCCACTATCACCATCACCCACAAGAGATATGAGGGTGAAGTAGAGTACAGATGTGAGGCAGAGCTGGACCTGGGACCAGAGGGACCAAAACCTTCTGCCTTGTCATCAAAACCTCTTTATGTTTACTGGTCCCTTGCTCAGAGCCCTACCACCACACACCCCAATCGACCGGTGGAAGTGACTCCCTCTCCAGACAGAACTGCTCACACAAACAAGTCAACAACACCCACGGCCAAGTCCTTAACCACCACAGtgACACCATCTCCAACCACCTCTGAGAATACCGCCGTCGTTTCTCCTGTTGCCTGGGATTCAAAGTGGGATGAACCATTCAATTATGACTACTACTTCCTCCGTGTTGTTGGTCTGTCTATGGCCGCAGCACTCTTCATCCTGGGTATTATGGTCATTAGCTGTGGTAAAGTATGCCGGATGCCTAGGTGTCATGTGGGCACAGGGAAGTCGTACCAAGTGTCCAGAGAGTAGTGAGGGGACAAACGTGTTACTGAGTGGCCTCAAGACACCAGAAGAGTTCATCAGAGGGACATGGAGAAACAACACTGATACAACATATTAtcgaccatgtgtgtgtgtatgtttgagtttgagtttattttatttttacagggacagtgcacattatgtgtgtgtgaaaACGTTGTTGGACAAAACTCTGCGTCTGTCATTTCAGAGATGAGAACGTGATATGTGTTTCATGTGCCTTTCCCACAGACTGCAAGTGACTCACTCAACATTATGAAattacccctccctcactcttctAAAGACTTACCTGTAGTTTTAAATGCAAGTTTTATTATACTTTGGCACTCATGTTTCTATGTATATTTTGAAATGCTTACAAAATGTTACAGaatacatactgtagatgttACGTAGCTCAGAGGCGCCCCCAAGAGCACTGGAAGAGGTACTGATCCTTTTTTTTCTCATATCCCAGAGACAGCAATTTCATGCCTAGCTTTTCACAGATCATTGTGTAGATTTTATCTGTAGATTTGTCACCAACTTGAATTATATTTTCTCTAATAAATCACATACATGTCCTGTT

Function

NR:

description
intercellular adhesion molecule 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592115.2 False 1904 mRNA 0.46 12 14998676 15022578
XM_036969933.1 False 1847 mRNA 0.46 11 14998676 15022578
XM_036969938.1 False 1796 mRNA 0.46 10 14998676 15022578
XM_036969928.1 True 1749 mRNA 0.46 12 14999054 15022578

Neighbor

gene id symbol gene type direction distance location
LOC110510950 LOC106605624 coding upstream 7282 14984771 ~ 14991394 (+)
LOC118944476 LOC106605624 coding upstream 14531 14942150 ~ 14984145 (+)
LOC110510982 NA coding upstream 56804 14919599 ~ 14941872 (+)
LOC110510471 LOC106577854 coding upstream 221523 14743721 ~ 14777153 (+)
LOC110503699 NA coding upstream 367514 14628884 ~ 14631162 (+)
LOC110511152 NA coding downstream 33252 15055830 ~ 15061264 (+)
LOC118944484 NA coding downstream 41501 15064079 ~ 15066323 (+)
LOC110511049 LOC106605627 coding downstream 49427 15072005 ~ 15095913 (+)
LOC110511142 fxyd7 coding downstream 76287 15096725 ~ 15102227 (+)
tyrobp tyrobp coding downstream 93279 15115857 ~ 15132280 (+)
G227369 NA non-coding upstream 70928 14927508 ~ 14927748 (+)
G227354 NA non-coding upstream 82375 14916052 ~ 14916301 (+)
G227333 NA non-coding upstream 102355 14896033 ~ 14896321 (+)
G227323 NA non-coding upstream 108931 14889378 ~ 14889745 (+)
G227489 NA non-coding downstream 21085 15043663 ~ 15043953 (+)
G227492 NA non-coding downstream 22369 15044947 ~ 15045254 (+)
G227569 NA non-coding downstream 125189 15147767 ~ 15147995 (+)
G227405 NA other upstream 601 14997159 ~ 14998075 (+)
G226941 NA other upstream 294701 14703601 ~ 14703975 (+)
G226791 NA other upstream 588595 14408872 ~ 14410081 (+)
G227606 NA other downstream 221368 15243946 ~ 15244282 (+)
zgc:162160 LOC106605640 other downstream 665765 15672260 ~ 15697397 (+)
LOC118944532 NA other downstream 1490925 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1620773 16619192 ~ 16674738 (+)

Expression


Co-expression Network