XLOC_021604


Basic Information

Item Value
gene id XLOC_021604
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18924470 ~ 18929002 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044811
tacagctgagaacaaataatagatttaaaagaccaaaaactGGCCGTTAGATatacacaaaatgtattaaatatcgtGTTTTAACTACAAGAGGGAGATTGAATCCAGCGGCAGATGCGAGATTGACTGGCCGAAGTAAAAGCTGCTGTCGGCGGGGGAGAGAATCATAAAGCTCCCGCTGACAGAGTCCGCTTTCACTGAAGCACATTGTCAAAGAAGCGctgtctttttaaataaactgccgattcgagtttaaaacaactacattctcgcctgaaatactcttaaaactacattttgtgaaacattagatgatattttttttaaacttgcggGTCTGCACAGCGGGGTATTGTCCATTGACTTTCACTTAGCAATAGCAGGCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTTTTGCCCGCGCCGTGCATTCATAATGCCAGCTGATTACGTGTGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGATGGAGGATGGACCTGAAGGACGCAAAGAAGCTGGAATACGCTCGTAAAGACGAAGCACAGACATTTGCAGAAAATGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAAGAGAATAGAAGTTTGCAGATGATCTAACAGggtgtcacagtggcgcagtgggtagcatgatcgcctcacatcaagaaggttgctggtttgagactcggctgggtcagttggcatttctgtgtggagtttgcatgttgtccccatgtttgtgtgggtttcctccgggtgctccggtttcctcgacaagtccaaagacatgcagtacagatgaattgggtaagctaatttggccatagtgtgtgaataagtgtgtatgggtgttttccagtgatgggttgcagctagaaggacatccgctgtgtaaaacgcatgctggatatgttggcggttcattccgctgtggcgaccccagattaataaagggactaagccgaaaataaaataaatggatggatgattttattttgcaatagatTCAGACTTTCGTGCAGCTCTAATTCTGCTCCCCCATATCTTTAAAGAGAAAGATGATTGCTTACAGTAATTACACTGGAAGAGGTTTGGGTACTGTTGGTTAAACACTTTGTAATACTCTGATAGATGTTATGCAGTTCTGACagattttacattgtttattgatgtcctttactttttcttttcacagtgggatgatgatgatgctccATACCCAACTCTACAGATGGCTGAAAGTCCGTTTTAGAGGCATTATTACATCCTTCGCTGTTTACTGTGTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCAAGATGGAACAACAATTTAAATTTGAACATCAGCAACGGTGTGAAGATGGAAATCCAAAATTACAAGAAAAATCAGTGCAGCTGTCCGAGAGCACTGGTATTGCTGGATCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTGGTGCATGCGTTTCGAGTCTGTGCATCAGTAATTTAAGACTAGCAGCTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATGAAACAATACTAAGAATTTTCTCTGCCCAACATCCTTGACGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTATCGTGTGCATGTGAGACCGCTAATGGAGAAGAAATTACACTTTcttaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTAGCAAGTTTTTAATTCTGCTGTTGTATGATTCATATTTCCATGCAAATACAGTAAGAGTTTGACTTTGAATGGGGTGTTATAAACCAAGACAGATGGACTTTCAGGCTCTTGAAACATACTCTGCTGATAAActgtttaagaatgtttagaaattTCAAATCAAATGTGTAAAACTTTGATCAAAAGtgtttttgagatctaaaatgaTTATGGGTATACAGTAAGTGACATGTTTTAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAATGTAGAGTGCAGTGCACTaacaaaaatgtactttattaGGTCCACTGTTGTTTTAGAAAAATGACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGCactgatgttaaaaaaaataatattaagtttttttgctgtttcataaaatgtttaagcagctattttttaagtttatgcaTCTGGTATGACTTTGTGATAGTTTAAAACTTTCATCTTCTAAAAAGGTGACAATGTTATTGTTTTGAATCTTTCAATGTTTGTTTGTGATACATTGTTAcattttaatgtcttttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatatgtttaataaatttgataaatgaaatttaatgtgTATGGAGTACAAATCTGAAATGAAAGGGTACAAAATTCATCCCTATGGAGGAGAAATTGTACCTTTTTTAAAGGTACATTATTGTACCATAGCCCAAGTAAGGTACAAATTAGTCAGCAGAGGTACATATTTGACCCATGAAGGTACATACTGctagggtacaaatatgtacccatGTGAAAGGGTACAACAGGTGTACCCTTgagggtactgccccagtgacaagccattgtaccccaaaaggtacaaattttgcacattttttctgacagtgtaccATAGGCTATATAACCACTGACTTGTGAG

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0035239 tube morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0001570 vasculogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044811 True 2978 lncRNA 0.38 5 18924470 18929002

Neighbor

gene id symbol gene type direction distance location
XLOC_021603 emp3b coding upstream 129909 18779043 ~ 18794561 (+)
XLOC_021601 myh7bb coding upstream 167392 18722715 ~ 18757078 (+)
XLOC_021602 CR847953.2 coding upstream 193071 18731322 ~ 18731399 (+)
XLOC_021600 NA coding upstream 232988 18688354 ~ 18691482 (+)
XLOC_021599 avpr2ab coding upstream 381111 18527028 ~ 18543359 (+)
XLOC_021605 cox4i2 coding downstream 15386 18944388 ~ 18951148 (+)
XLOC_021606 CR788311.1 coding downstream 122483 19051485 ~ 19066987 (+)
XLOC_021607 NA coding downstream 176544 19105546 ~ 19119443 (+)
XLOC_021608 CR388168.2 coding downstream 248889 19177891 ~ 19182388 (+)
XLOC_021609 si:dkey-93l1.4 coding downstream 253817 19182819 ~ 19187816 (+)
XLOC_021598 CR339055.1 non-coding upstream 635269 18289074 ~ 18289201 (+)
XLOC_021597 NA non-coding upstream 788176 18134466 ~ 18136294 (+)
XLOC_021595 CR352232.1 non-coding upstream 792147 18129860 ~ 18132323 (+)
XLOC_021613 CR388168.1 non-coding downstream 288526 19217528 ~ 19218940 (+)
XLOC_021614 NA non-coding downstream 544394 19473396 ~ 19476151 (+)

Expression


Co-expression Network