LOC110511165


Basic Information

Item Value
gene id LOC110511165
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15112835 ~ 15115841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471684.2
CGAAACTGTTCCgcctggtgcagacacaaaaacagaaaactacccacaaaacaaaGGTgggaaaggctacctaagtatggttcgcaatcagagacaacgatagacagctgcctctgattgagatccacaccaggccaaacacacagaaatagaaaacatagaacacaaaacaaagAATGCCCACCCCAATTGAATGTCTTTGATAATTCAATGTTTTACACCCAACTTCTATGTTTTTTAATTTCAGGAGGTGGTTAAGCCTGCACTGAAGCACTTACAGGAGAAGCTGAATGTCTTCAATGACGTTAAACTGACCTGTTTAACGTCATTGACCTGTTTAACGTCATGTGATCGCAGCCACATTTCCACCCTGTGGAATTATGGATGATAGACTGGTGACTGATGTTACTATCAGATACATTATTGTTTGCTATCTCCAGAGCCAGGCTCAGCACACAGAGAGGCAATCAAGGAGGAGTTTGAGAAGCTTCCTTTGTACCtacaagaggaagaggaggtcagGATAGTTGCATTAAGGGAGGAAGAGAAGCAGAAGAGTCAGAAGATTGAGGAGATGAGCAGAGAGATATCATCACTGTCAGACACAATCAGAACCATAGAAGAGGAGCTGGGGCCTAAAACCATAACATTCCTACAGCACTACAGTGCCACTTGGAAAGAACCCAGTGCACATTGCCAGACCGTGAGAGGGTTTCAGGAGGACTGATTGATGTGGCAAAGCACATGGGTAACCTGCAGTATAGAGTCTGGGAGAAGATGCAGGCAAGAATTCAATACAGTGAGTATTAGATACAATTGAGATAAAACGTTAACGCCACTAAAATGTTCCAACACAGAAAACAAGAAATACACTTAGTGAATAAAATGTATGATGAATAATGAGATTATGTCCATACCTAAATTTGATTTAATTATGGTATGTTTGTGTTGTCTCTGTTCAGTTCCAGTGACTCTAGACCCCAACACTGCAAACTCATATCTAATCTTGTCTGATAATATACTGAAACTTCCAGACAACCCAGAGATATTTGATGACTATAAAATGGTCCTGGCCTATGAGGGCTTTAACTCAGGAATACACGATGAGGTTGGGCACAATACAGGACATTTCGTTGGTGTGATCACAGAGTCTTGCCGGAGGAAGGGAGACTTCAGCATGTGTAGAGGATCCTGGGGTGCGTGGTTTTGAAAGGATAGGTATTTAACATATGTTCTAATGGTGCCACGTGTTCACAGACTTGATCGCCTAACCCGTGAGACAGAAACCCAAGATGGCCAGAGTGCAGCTGGACTGGTACAGAGGAAAGCTGTCATTCTCTGACCCAGataataacacacaaatacacacattcacacacactttcATTGAGAGAGTCTTTCCATACATCAGGAACCACTTTATTCTCCATCCTCTGAAGGTGTTACCTGTGAAGGTCTCTGTTACAGTGGATACTGCCTCTGTCTGAATCAGGGATTAGCATGTTGAATGAGTCAGTAACACTTACTGAGGCCCTTCACCTGCTGTAACACTCTCATCAGTCAAACAATGATAACTCATCTTGTCAACAAACAGCAGACTAACACCTTCAGACTATTTAGTGAAAAAGGTCACCTATAAAATAATCATTCACAGGAAGTTGTGggtgttaattttttttttttaagtgtattTGCCATTGTGAACATAGGTAACTTGCTGATAAAAAGTTCTATATTGTTTAAAAAGTCTGAGTTGGGATAGGCTACACAGATGCCACATTGTTTCCAAACCATACAGTTCAAACCATCCAATGATACTTATCATGTGTCTTAATTAAGACTTCAATTCAATTCATGAAGTTAAAAAGACTCCGCTATCCTTGTCAAGACTGCTCCTCAGCCCTCCTAACACAGAGGAAAGTGGTAGTTGAGCTTGCTTTACACTAGATGGGGTGAGTGTATTAAAGTGTATCAAACAGACACTAGAGGGCATCGTAGCCTTTCCATGAGGACAAAGAAACACTGAATCAGCTGTATAAAAAATGATTAAATCATATGCTGGAGGCTTTGTCCTGTCCTGAAAAGCTAACAAGAGCTGCTAGTAGGCTAAAGGGTCTGGGTTGAATAACCCTTCGATTTTGTCAATCTAGGATACATTGCCATTGGATTAAAGAATATATGCAGATTGTTCAAATAAATGACTGACTTAATTATTTTCCCCAATAAACTGAGTTCAAATGGACTTGATCTTAACCATGCCTAAACATGTCAATATAAACACTTTGTGCTAAAATAAGACAAGCCAGATTCATGTCTTTCCTAGCATGCATGTAGACGCTTAACAGTTTGATAAGGAATAGTGGGTGTATGCTTTGATGCCGGATTCCCCTCCTGTCATTGGTTTGAGACCAAAGCAGCCAATGAGACTGTTCAGTTAGATTTCCTCATGCAGATACCAACCGCTGCAGTGGAGAGTAACTAAAGGCTTCTAAATAATACAGTAGTGTGTGATGATGGCATATAGGAAGATTCCTACTACATCAAGGAAATCTCATTcttattctccctctctttctgccccccaaacacacacacacacactagttgcgacccgtcattcagggcaggtgagaGCCCCATCAGTTTTGAGCTCCACCTGTTTTGAGctccacctgttttgagccccacatttttagcaaaaaCAATTACAAATTGAACAGTCTCATTGGCTGCTTTGGTCCCAAATCAATGAgagggcttgcctgttttgcatgttcttttggcattaatacatgtcacatatcagttt

Function

NR:

description
PREDICTED: zinc-binding protein A33-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471684.2 True 2809 mRNA 0.41 3 15112835 15115841

Neighbor

gene id symbol gene type direction distance location
LOC118936618 LOC106605662 coding downstream 2904 15102353 ~ 15109931 (-)
si:dkey-262k9.2 LOC106577773 coding downstream 71942 15023525 ~ 15040893 (-)
LOC110510856 LOC106577793 coding downstream 278804 14780067 ~ 14834031 (-)
aplp1 LOC106577862 coding downstream 369936 14694606 ~ 14742899 (-)
zbtb32 LOC106577891 coding downstream 445335 14655864 ~ 14667500 (-)
plm plm coding upstream 42751 15158002 ~ 15171917 (-)
LOC110519917 LOC106577761 coding upstream 68977 15184818 ~ 15204146 (-)
LOC110519925 LOC106578249 coding upstream 101150 15216991 ~ 15230487 (-)
si:dkey-65b12.6 LOC106577653 coding upstream 281832 15397673 ~ 15406356 (-)
LOC110519926 LOC106577653 coding upstream 324893 15440734 ~ 15470012 (-)
G227438 fxyd5a non-coding downstream 90260 15004287 ~ 15022575 (-)
G227476 NA non-coding downstream 114434 14997217 ~ 14998401 (-)
G227472 LOC106605624 non-coding downstream 121429 14990463 ~ 14991406 (-)
G227340 NA non-coding downstream 212696 14899834 ~ 14900139 (-)
G227331 NA non-coding downstream 218290 14894249 ~ 14894545 (-)
G227707 NA non-coding upstream 49786 15165627 ~ 15165998 (-)
G227717 LOC105030512 non-coding upstream 78356 15194197 ~ 15216186 (-)
G227732 NA non-coding upstream 109985 15225826 ~ 15226093 (-)
G227741 NA non-coding upstream 127111 15242952 ~ 15243191 (-)
LOC110503689 tm149 other downstream 476125 14598789 ~ 14638314 (-)
psenen LOC106577931 other downstream 587981 14519197 ~ 14524902 (-)
G227060 NA other downstream 637669 14428793 ~ 14475166 (-)
LOC110538195 LOC106578103 other downstream 1111027 13995196 ~ 14023153 (-)
wu:fe05a04 LOC106578221 other downstream 1185002 13909746 ~ 13927861 (-)
LOC110512327 LOC106578554 other upstream 420524 15536363 ~ 15539677 (-)
G228094 NA other upstream 485174 15601015 ~ 15601488 (-)
G228098 fbrl other upstream 590393 15706234 ~ 15708265 (-)
G228191 LOC106578455 other upstream 671781 15762029 ~ 15791401 (-)
G229373 LOC100194703 other upstream 1723548 16839389 ~ 16839839 (-)

Expression


Co-expression Network