tyrobp (tyrobp)


Basic Information

Item Value
gene id tyrobp
gene name tyrobp
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15115857 ~ 15132280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963644.1
agtgttcagtttgattAAAAATCAtaaacacgtaccacgctgcatcttggtctcaTCCTTCAAACAGCCGTTACACCTAAAAACAGTCGATGTAGTGTGTCAGACATATAAGGGAAACaggggaggagtaggaggaggagcagTGAAACATTTATTCAAAagtgaactcctagcaagccctAGTGAAAGACAGTAACTGATCATTGTAGAAGGTCCTGTAGATAAGTTTACATTAAGATATTGTACGGTGGTAATCACAGAATGTCAGACAACGCAGCATTGCTGATGGTTCTCTTCTTTTGCCTCTGTGAAAAAGTTGTGACTGACCCAGATAACCCGTCCTGCTACAGGATTGAGCCTGGCACCATGGCTGGCATCATCATTGCAGACGTGATCCTGACCATTGCCATTGTCATTGTCACGTACCACTGTGCCAGCCGACGCAGACGTCGAAAAGAGAGGGCTCTACCACAGAGTCATTGGGGACAGATTACCTTGGACAAAGCACCAGGGACCCGGAGCCttagacctctcctctcctctagtctccttaGTAGGACCAGGCTGAAAATGGGCAAGGCCCTCTGTATCGTGGCTCCCCTGAAAGGATTATTTGGTCCTGCCGAAGGAGAACAAGactgtggCCACTGCTATCAGATAGATATGGGGGTAGTGGTGGGAATCATTGCCTGTGACATCATCCTGACCCTCCTCATCGCTCTCACCGTGTTCTGTTTTGCTACCATCCGGAAGAAGAGGAGTCAACAGGAATCCAGACTGGaggGAAAAGGGAAAACAATCACAGCATCAAAAAGGAAGACAGTAGAAATCACAGAGTCTCCCTACCAGgagctgcatgGATTTCAGTCAGACGTGTACAGTGATCTCCAACAGTTTCAGaaatgagactacttttttggaCAGACTGCATGTATCTTGCTGCCTGGTGCTTAAATCTGACAAGGACTGAACTTCGCACATCTAGGATTTATATTTATACTCATCTCCTTACTGTTATCTTTCAACTTTTGTGTGTCTGTCTAATTGTAAAATTAATAGAATAGCATTTGACACATTCAAGAGATATTGTATATATTTGACATAAATAGACATATTAATGTTTGTTTAATAGGCTACCTTTTATAGTGTTGTTTTCTATGATTTACATGCAATTTTATTTCATTATATATCTGTTTTATTTGACTTAATTAAGTCATTTCTGTATATTAATGGGGTTATTTTATTCTGTGTTTCATAAGTACATCATTTGTATATTGCCAGAAATAGTTCATGGAAGCCCCATTAATATTGCCCTCAGGATgttggtggcactttaattggggaggactggctcatGGTAAAGGCTGAAGCCAggtaggtggaatggtatcaaacacatggtttctatgagTTTTATGACATTCCATTCGTTCCTTTCCAGCCAtcattatgagctgtcctccactcagcagcctccactgatattgCCTATTATTAATATTAGTCATATGATCTGAAAAACTATTAGTCAACTGGGATGAAAAACTTCCCAGAGATATTTTAAATTGAGTTTCTGTCTGCTCCCTGTTAGTCATAAGCTGGAGTCCCTTACTCACTatcaacaccagggttgtggttAATTCATAATAATGTGGGGGGGAAAGTCTCTACATCCTCTTTGAAAATCATAAGAAATTAATATGAATATTAATAATTGCATATGCTTGGAATGTGTTAGCCTGGCTGATGTGTGGACTTAGGATGCGTTTCTCAAAAAATgtcaaatatttgtttttttaagaTTTAGGAGCTCAGTGCTGTTTATTGTATTGGTTAGGTGGTTACATATCAAATACATTGTTCAATGTTTTTATTCACAACTAAATTATGTCTCCATACCTAAAATAAACATTAA
>XM_036963639.1
tAAAAATCAtaaacacgtaccacgctgcatcttggtctcaTCCTTCAAACAGCCGTTACACCTAAAAACAGTCGATGTAGTGTGTCAGACATATAAGGGAAACaggggaggagtaggaggaggagcagTGAAACATTTATTCAAAagtgaactcctagcaagccctAGTGAAAGACAGTAACTGATCATTGTAGAAGGTCCTGTAGATAAGTTTACATTAAGATATTGTACGGTGGTAATCACAGAATGTCAGACAACGCAGCATTGCTGATGGTTCTCTTCTTTTGCCTCTGTGAAAAAGTTGTGACTGACCCAGGTACAAATAACCCGTCCTGCTACAGGATTGAGCCTGGCACCATGGCTGGCATCATCATTGCAGACGTGATCCTGACCATTGCCATTGTCATTGTCACGTACCACTGTGCCAGCCGACGCAGACGTCGAAAAGAGAGGGCTCTACCACAGAGTCATTGGGGACAGATTACCTTGGACAAAGCACCAGGGACCCGGAGCCttagacctctcctctcctctagtctccttaGTAGGACCAGGCTGAAAATGGGCAAGGCCCTCTGTATCGTGGCTCCCCTGAAAGGATTATTTGGTCCTGCCGAAGGAGAACAAGactgtggCCACTGCTATCAGATAGATATGGGGGTAGTGGTGGGAATCATTGCCTGTGACATCATCCTGACCCTCCTCATCGCTCTCACCGTGTTCTGTTTTGCTACCATCCGGAAGAAGAGGAGTCAACAGGAATCCAGACTGGaggGAAAAGGGAAAACAATCACAGCATCAAAAAGGAAGACAGTAGAAATCACAGAGTCTCCCTACCAGgagctgcatgGATTTCAGTCAGACGTGTACAGTGATCTCCAACAGTTTCAGaaatgagactacttttttggaCAGACTGCATGTATCTTGCTGCCTGGTGCTTAAATCTGACAAGGACTGAACTTCGCACATCTAGGATTTATATTTATACTCATCTCCTTACTGTTATCTTTCAACTTTTGTGTGTCTGTCTAATTGTAAAATTAATAGAATAGCATTTGACACATTCAAGAGATATTGTATATATTTGACATAAATAGACATATTAATGTTTGTTTAATAGGCTACCTTTTATAGTGTTGTTTTCTATGATTTACATGCAATTTTATTTCATTATATATCTGTTTTATTTGACTTAATTAAGTCATTTCTGTATATTAATGGGGTTATTTTATTCTGTGTTTCATAAGTACATCATTTGTATATTGCCAGAAATAGTTCATGGAAGCCCCATTAATATTGCCCTCAGGATgttggtggcactttaattggggaggactggctcatGGTAAAGGCTGAAGCCAggtaggtggaatggtatcaaacacatggtttctatgagTTTTATGACATTCCATTCGTTCCTTTCCAGCCAtcattatgagctgtcctccactcagcagcctccactgatattgCCTATTATTAATATTAGTCATATGATCTGAAAAACTATTAGTCAACTGGGATGAAAAACTTCCCAGAGATATTTTAAATTGAGTTTCTGTCTGCTCCCTGTTAGTCATAAGCTGGAGTCCCTTACTCACTatcaacaccagggttgtggttAATTCATAATAATGTGGGGGGGAAAGTCTCTACATCCTCTTTGAAAATCATAAGAAATTAATATGAATATTAATAATTGCATATGCTTGGAATGTGTTAGCCTGGCTGATGTGTGGACTTAGGATGCGTTTCTCAAAAAATgtcaaatatttgtttttttaagaTTTAGGAGCTCAGTGCTGTTTATTGTATTGGTTAGGTGGTTACATATCAAATACATTGTTCAATGTTTTTATTCACAACTAAATTATGTCTCCATACCTAAAATAAACATTAA
>NM_001246340.1
CCttagacctctcctctcctctagtctccttaGTAGGACCAGGCTGAAAATGGGCAAGGCCCTCTGTATCGTGGCTCCCCTGAAAGGATTATTTGGTCCTGCCGAAGGAGAACAAGactgtggCCACTGCTATCAGATAGATATGGGGGTAGTGGTGGGAATCATTGCCTGTGACATCATCCTGACCCTCCTCATCGCTCTCACCGTGTTCTGTTTTGCTACCATCCGGAAGAAGAGGAGTCAACAGGAATCCAGACTGGaggGAAAAGGGAAAACAATCACAGCATCAAAAAGGAAGACAGTAGAAATCACAGAGTCTCCCTACCAGgagctgcatgGATTTCAGTCAGACGTGTACAGTGATCTCCAACAGTTTCAGaaatgagactacttttt
>TU260289
tagcaagccctAGTGAAAGACAGTAACTGATCATTGTAGAAGGTCCTGTAGATAAGTTTACATTAAGATATTGTACGGTGGTAATCACAGAATGTCAGACAACGCAGCATTGCTGATGGTTCTCTTCTTTTGCCTCTGTGAAAAAGTTGTGACTGACCCAGGTACAAATAACCCGTCCTGCTACAGGATTGAGCCTGGCACCATGGCTGGCATCATCATTGCAGACGTGATCCTGACCATTGCCATTGTCATTGTCACGTACCACTGTGCCAGCCGACGCAGACGTCGAAAAGAGAGGGctgATAAAGTCTACATGAATGTCAGGGCAAACTGCAAAACATGAGAATCCTCAGCAAGCACCAGAATACATATTAAACATATTTGTAAATACTGTGCAATCTTGTTTTACATCATATCTGTCAATACATTCTTGTGATTTGATGTGTCTTTCACTGCCTCCTCCTGGTGAAAAATCAA

Function

symbol description
tyrobp Predicted to enable signaling receptor binding activity. Acts upstream of or within phosphatidylinositol 3-kinase signaling. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface. Is expressed in liver; lymphocyte; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Nasu-Hakola disease. Orthologous to human TYROBP (transmembrane immune signaling adaptor TYROBP).

NR:

description
PREDICTED: hematopoietic cell signal transducer-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963644.1 False 1915 mRNA 0.40 9 15115857 15132280
XM_036963639.1 False 1906 mRNA 0.40 9 15115872 15132280
NM_001246340.1 False 396 mRNA 0.48 5 15126467 15131282
TU260289 True 477 lncRNA 0.42 5 15116027 15120024

Neighbor

gene id symbol gene type direction distance location
LOC110511142 fxyd7 coding upstream 14804 15096725 ~ 15102227 (+)
LOC110511049 LOC106605627 coding upstream 19944 15072005 ~ 15095913 (+)
LOC118944484 NA coding upstream 49534 15064079 ~ 15066323 (+)
LOC110511152 NA coding upstream 54593 15055830 ~ 15061264 (+)
LOC110510993 fxyd5a coding upstream 93279 14998676 ~ 15022578 (+)
LOC118944490 LOC106578274 coding downstream 4492 15136772 ~ 15138356 (+)
LOC118944493 LOC106578274 coding downstream 6278 15138558 ~ 15141461 (+)
LOC110519918 LOC106578256 coding downstream 72247 15204527 ~ 15212699 (+)
LOC110519916 LOC106577754 coding downstream 117614 15249894 ~ 15271273 (+)
LOC110519929 LOC106577750 coding downstream 150625 15282905 ~ 15298123 (+)
G227492 NA non-coding upstream 70603 15044947 ~ 15045254 (+)
G227489 NA non-coding upstream 71904 15043663 ~ 15043953 (+)
LOC118944476 LOC106605624 non-coding upstream 132802 14942150 ~ 14984145 (+)
G227369 NA non-coding upstream 188109 14927508 ~ 14927748 (+)
G227569 NA non-coding downstream 15487 15147767 ~ 15147995 (+)
G227570 NA non-coding downstream 15801 15148081 ~ 15148286 (+)
G227573 NA non-coding downstream 19068 15151348 ~ 15151581 (+)
G227580 NA non-coding downstream 49591 15181871 ~ 15182514 (+)
G227609 NA non-coding downstream 115496 15247776 ~ 15248002 (+)
G227405 NA other upstream 117782 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 124563 14984771 ~ 14991394 (+)
G226941 NA other upstream 411882 14703601 ~ 14703975 (+)
G227606 NA other downstream 111666 15243946 ~ 15244282 (+)
zgc:162160 LOC106605640 other downstream 556063 15672260 ~ 15697397 (+)
LOC118944532 NA other downstream 1381223 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1511071 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1662419 16794699 ~ 16801793 (+)

Expression


Co-expression Network