LOC118944493 (LOC106578274)


Basic Information

Item Value
gene id LOC118944493
gene name LOC106578274
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15138558 ~ 15141461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964111.1
agcaaaatgcttgtgtttctagctccaacaatgtagtaactctctctccttcgctctccccAACATCCCCTAGATGCTCCTCGTTCCACCGTGATTGAGGTGAGTCCCATGGGTGTGGTAGTGGAGGGGGTCTCTGTGACTATGACCTGCAACAGCAGTGGGGCTCCGGTGGTGGAGAGCTATGCCTGGTTTAAGGACAGGGAGAGTGGCAGCATTCCAGACAGCTTCAGACCCCAGCTCCACCTGAAGAGGGTGTCCCACACCGACCGGGGAGAGTACTTCTGTGTGGCACGCAACCCACTTGGTACAGAGAGGTCCAAACCTGTCCTGCTAAACGTCACATACTCTCCAAAGAGCACCAAGGTGTTGGTTAGTCCAACAGGAGACATCAAGGAAGGCTACTCTGTCAACCTGACCTGCAGCAGCAAGGCCCACCCCCCAGTGGACCGCTATGCCTGGTTCAAGATCATGGGGGGTCAGACCTGGGCCAAAGGGTCAACACAGAACATCTCCTTCTCCAGCGTCCGATCACAGAACGGAGGACAGTACTACTGCACGGCCTGGAACCAACATGGACAGGGCAGCTCCTCTGTTTTCACCCTCGCCATTCTCTatGCCCCTAAGAACACGTCTGTGTTTGCGCAGCCCTCCAGTGTGATCGACGCGGGCCGTCCTCtgactctgacctgcagcagtcAGGCCAACCCGGCGGTGGACAACTACACGTGGTTCAGGATCAATGCGGCTGACGCCTGGGTAACGCGATCGGGCCCAAGCTACACCTTCGCTGAGGTCAGCCCCGGGGAGAGCGGCCAGTACTACTGCGAGGCACGCAACCGTATCGGCGTCCACAGCTCGCCTGTCCTCACtgtcagggtcagagTCTTCCCACTCACTATCCCAGAGTCTTTCTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964111.1 True 915 mRNA 0.57 4 15138558 15141461

Neighbor

gene id symbol gene type direction distance location
LOC118944490 LOC106578274 coding upstream 202 15136772 ~ 15138356 (+)
tyrobp tyrobp coding upstream 6278 15115857 ~ 15132280 (+)
LOC110511142 fxyd7 coding upstream 37505 15096725 ~ 15102227 (+)
LOC110511049 LOC106605627 coding upstream 42645 15072005 ~ 15095913 (+)
LOC118944484 NA coding upstream 72235 15064079 ~ 15066323 (+)
LOC110519918 LOC106578256 coding downstream 63066 15204527 ~ 15212699 (+)
LOC110519916 LOC106577754 coding downstream 108433 15249894 ~ 15271273 (+)
LOC110519929 LOC106577750 coding downstream 141444 15282905 ~ 15298123 (+)
gapdhs LOC106577739 coding downstream 158147 15299608 ~ 15319903 (+)
LOC110519928 LOC106605633 coding downstream 178902 15320363 ~ 15324018 (+)
G227492 NA non-coding upstream 93304 15044947 ~ 15045254 (+)
G227489 NA non-coding upstream 94605 15043663 ~ 15043953 (+)
LOC118944476 LOC106605624 non-coding upstream 155503 14942150 ~ 14984145 (+)
G227569 NA non-coding downstream 6306 15147767 ~ 15147995 (+)
G227570 NA non-coding downstream 6620 15148081 ~ 15148286 (+)
G227573 NA non-coding downstream 9887 15151348 ~ 15151581 (+)
G227580 NA non-coding downstream 40410 15181871 ~ 15182514 (+)
G227609 NA non-coding downstream 106315 15247776 ~ 15248002 (+)
G227405 NA other upstream 140483 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 147264 14984771 ~ 14991394 (+)
G226941 NA other upstream 434583 14703601 ~ 14703975 (+)
G227606 NA other downstream 102485 15243946 ~ 15244282 (+)
zgc:162160 LOC106605640 other downstream 546882 15672260 ~ 15697397 (+)
LOC118944532 NA other downstream 1372042 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1501890 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1653238 16794699 ~ 16801793 (+)

Expression


Co-expression Network