LOC110519918 (LOC106578256)


Basic Information

Item Value
gene id LOC110519918
gene name LOC106578256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15204527 ~ 15212699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596785.2
GTGACATTATAAGCCAGCAACAGTGCCTTGACTTTTTTTTGCAGGCTTATAATGTCAATGCTTTTCTACACGTCTATTTTTGTTTCTCAATATCCTTGACCAGTTCCTAGTTAGGAAAAAGAGAAGTGagtgacagacagaaagacagacactgTCGAGGTCTTCGCTGCTAATGTAAAGAAGGACAGTGAGTGGGGGAGCGTCAGAGATGGCTTTGGGAGTCTTCCAGACTGGCTGGATGAGGCTGCTCTCACTTATCCTGCAAGGCTGCTGTGTGGGTGTCCTCTGTAGTGACTGGGCTGTGCGTGTCCCCTCCGCTCCCCTGTGTGCCGTGGCCGGCTCGTCTGTGGTCCTCCCCTGCTCCTACGACTACCCTCAGCCCTACAGGGTGCTGTCTGAGATGTGGTGCCGGGACCAGAGCCGCTGCATCACCCCCAGGTACGTGTACCATAGCCAGGGTATCTTCCCTGAGCCAACCTCCCAGGGCAGAGTGGAGTACCTGGGGAAGGAAGGAACAAGGAACTGCTCCCTGAGGATCTCTGATCTGAGGAGGTCTGATAGCGGGACATACATCTTCTATTTTATCACCAACCACCCAGTGGAGAAGCCTCCTGGACAGCCTGGAGTAACCCTGCTAGTGGCAGATAATTCCAGTGAAGTAGCAGTGTCCCTCAGTCCCGCTGGTGATGTTGTTGAGGGCAGCTCAGTGACGTTATTCTGCTGTAGTACTGCCCACACTCCAGTGGAGGGCTACACCTGGTACCAGACTGGAGGCTCCACGGCTGGTGATAAGAGACAGATGATGACCATCACCAATATCAGCACAACAGACAGTGGAAACTACTACTGTGAGGCCCTGACCACTAATAAACCAATCTACTCCTCAGCGTTGTCTATTAATGTCCAGTATGCTCCAAAGAACACATCGGTGTCAGTCAATCCTTTTGGGGAGGTAGTGATGGGCAGCTCTGTGACTCTGTcctgcagcagtgatgccaacccTGCTGTAGAGCGCTACACCTGGCTTCAGAGGACAGAATCCCAAGCTTCACTGAGAGGGTCAGGGCAGAGTTACAGCATCACTAACATCAGCCTTGAGGACAGTGGGCAGTACTGCTGTGTAGCGATGAACAAGCATGGATCACAGAGCTATACTGTAACCATGACTGTGGGGAAAGTAAATGGCCAGTCCTCCATATTGTGGAGGTTGGTGGTGCCAGTGGGGATCCCCATCGCTCTGACACTGATCATCATTATAACAGTGGCTTGCATTAGGAGGAAAACTGTCCCAGCATCAAGTCAACAAGGTTACAGTCTTACAGAGACCACCATCCAGCAGCCATTACCCTAGTACTACATAAAGGATGACCATAACAAATGCGACACTTAAATTAACAGGAACTGAAAGGGAACTGAATTAACTCTGGTGGGAGATGTTGTGCCCAGTTTACTGCCACACAGTGGCACTGTTGTGTAGCTGTGTCCAGCTGTATTCTTTAATAATATGTACAGTAATATCTGTAGAATGTACTGTGCACCTCATTTCAGCTCTCTACTGTAGAAAATAAGTAATTTCACtgttataggcctactgtaattTACTTATTTTATGATGGAGAGTTGTTGAAGACTAGATGACCAAAAGTGAAACGACAACCAGAGATCAGTTtcaatatatgtaaatatatatttaaattgaATTACAATTATATAAAAATGGatcataacatactgtatatataacataACCATATGTCACAATGCCATGCTACACCACCCCAGGCTGAgcttatttttaaatgtaacctttacttacctaggcaagtcagtaaagaataaattcttatttataatgatggcctaccccggcaaaaccccaacgacgctgggccaattgtgcgccaccctatgggactcccaatcacagacggatgtgaaacagcctagatttgaacctgggactgtagtgacaccttttgcactgagatgcagtgccttagaccactgtatTATTTACAAGTTCTTCAAGTTTGAGTTGAGTGGCAAAATAAATAAGTCAACAACAGGCTGCAAGTTCAAAAATAATAATTCTCCTCTTTTAGTGAATACAAACTGAATTACTGAGACTCTCTCAGCCTGGTCAAAAAGGAGGTCATAACAGTACATAATTAATAAAAGCAACaaacctgtcacgttctga

Function

NR:

description
sialoadhesin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596785.2 True 2200 mRNA 0.46 6 15204527 15212699

Neighbor

gene id symbol gene type direction distance location
LOC118944493 LOC106578274 coding upstream 63066 15138558 ~ 15141461 (+)
LOC118944490 LOC106578274 coding upstream 66171 15136772 ~ 15138356 (+)
tyrobp tyrobp coding upstream 72247 15115857 ~ 15132280 (+)
LOC110511142 fxyd7 coding upstream 103474 15096725 ~ 15102227 (+)
LOC110511049 LOC106605627 coding upstream 108614 15072005 ~ 15095913 (+)
LOC110519916 LOC106577754 coding downstream 37195 15249894 ~ 15271273 (+)
LOC110519929 LOC106577750 coding downstream 70206 15282905 ~ 15298123 (+)
gapdhs LOC106577739 coding downstream 86909 15299608 ~ 15319903 (+)
LOC110519928 LOC106605633 coding downstream 107664 15320363 ~ 15324018 (+)
sult2st3 LOC106577720 coding downstream 115745 15328444 ~ 15332966 (+)
G227580 NA non-coding upstream 22013 15181871 ~ 15182514 (+)
G227573 NA non-coding upstream 52946 15151348 ~ 15151581 (+)
G227570 NA non-coding upstream 56241 15148081 ~ 15148286 (+)
G227569 NA non-coding upstream 56532 15147767 ~ 15147995 (+)
G227609 NA non-coding downstream 35077 15247776 ~ 15248002 (+)
G227610 NA non-coding downstream 38232 15250931 ~ 15253979 (+)
G227534 NA non-coding downstream 63461 15276160 ~ 15277190 (+)
G227615 NA non-coding downstream 65373 15278072 ~ 15278362 (+)
G227405 NA other upstream 206452 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 213233 14984771 ~ 14991394 (+)
LOC118944476 LOC106605624 other upstream 229550 14942150 ~ 14984145 (+)
G226941 NA other upstream 500552 14703601 ~ 14703975 (+)
G227606 NA other downstream 31247 15243946 ~ 15244282 (+)
zgc:162160 LOC106605640 other downstream 475644 15672260 ~ 15697397 (+)
LOC118944532 NA other downstream 1300804 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1430652 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1582000 16794699 ~ 16801793 (+)

Expression


Co-expression Network