LOC110519916 (LOC106577754)


Basic Information

Item Value
gene id LOC110519916
gene name LOC106577754
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15249894 ~ 15271273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596783.2
TTCCCTTTCAGCTCACCCACGCAGGCTTCCTCTAAGCATACTGAGCTGCCAGGGACGGACAGGGGAGGGGAATAGAGAGCATAATTGCTCAGCTTGTAGGCAGCTTGTAGCttgtaggcaggcagacagtttaggcagagagacacagaagaacacttggagagattgagaggaggcacaaaataaagaaagagagaagtaaGATAAAAGGGAAACAAATCACCAACAGCAAAAAAAAATTGATCCCAACAAGATGCCAAACGCCACACCACCAGGCTGGAACCCAGATGAGAAGTCTGGGATGGGACAACCAGCTCCTCCACCCTACCAGGACCAACCCAACGCAGGATACCCCGCACCAGCAGGCTACCCCCCCAATCCCCAGGGCTACGCACCACCGCCACAGTATGGAGGAGCTCCCGGGGCCCCTTACAGCCAGCCATACCCCCAGGGACAGTACTCCCCGGGACACTACCCCCAGTCCACCGTCACAGTCCAGCCTACGGTGTTTGTGACCCGTGGAGCTCTGCCTTACCCTCTGCCAGACTACCTGGGCTACTCCATTTTCACCATGCTGTGCTGCTGCCTGCCACTTGGCATCGCTGCACTTATCTACTCCATCTCGacTAGAGACGCCAACAACCAGGGTCACCAGCAGATTGCTGAGAAGAATTCTCGTCTAGCGCGGATACTGAACCACACCGCCCTGGGTATTGGCATCACCGTCATCGTCCTGTACATCGTCTCTGCAATCATCCTGGGCAACCGTATCGACTGATCTGACACCTCAACACCGGCTAGCACCACAGCCACCGCTTCTCTCAACCCCAGCACCCAAAATCATCATAACCTTGACCACATACAATAGGTGCCGGTGAAAGGCACTTTCCAAATAGATACATCCCACTGGGgatacactggttgaatcaatgttgtttccacgtcatttcaatgaaatggcTGAAATGAATATACGTTGAATTGACGCCTGTGCCCTGTGGGATATATCATAATGCTGTTTATTCATCAATGTTTATGACATTCATTTTGAAAAACTACATCTAATGACTTACTTTTTTTAATACCGGCAGACCGGATAGCTTAAATCATTCATTATTTTGCCTGTTTAATTGTATATTTAatatacatgaataaacacaAAATTATGGACACAAA
>XM_021596782.2
ACGCAGGCTTCCTCTAAGCATACTGAGCTGCCAGGGACGGACAGGGGAGGGGAATAGAGAGCATAATTGCTCAGCTTGTAGGCAGCTTGTAGCttgtaggcaggcagacagtttaggcagagagacacagaagaacacttggagagattgagaggaggcacaaaataaagaaagagagaagtaaGATAAAAGGGAAACAAATCACCAACAGCAAAAAAAAATTGATCCCAACAAGATGCCAAACGCCACACCACCAGGCTGGAACCCAGATGAGAAGTCTGGGATGGGACAACCAGCTCCTCCACCCTACCAGGACCAACCCAACGCAGGATACCCCGCACCAGCAGGCTACCCCCCCAATCCCCAGGGCTACGCACCACCGCCACAGTATGGAGGAGCTCCCGGGGCCCCTTACAGCCAGCCATACCCCCAGGGACAGTACTCCCCGGGACACTACCCCCAGTCCACCGTCACAGTCCAGCCTACGGTGTTTGTGACCCGTGGAGCTCTGCCTTACCCTCTGCCAGACTACCTGGGCTACTCCATTTTCACCATGCTGTGCTGCTGCCTGCCACTTGGCATCGCTGCACTTATCTACTCCATCTCGacTAGAGACGCCAACAACCAGGGTCATCAGCAGATTGCTGAGAAGAATTCTCGTCTAGCGCGGATACTGAACCACACCGCCCTGGGTATCGGCATCACCGTCATCGTCCTGTACATCGTGTCTGCCATCATCCTGGGCAACCGTATCGACTGATCTGACACCTCAACACCGGCTAGCACCACAGCCACCGCTTCTCTCAACCCCAGCACCCAAAATCATCATAACCTTGACCACATACAATAGGTGCCGGTGACAGGCACTTTCCAAAGAGATACATCCCACTGGGGACacgctggttgaatcaacgttgtttccacgtaatttcaatgaaatggcgttgaaccaacgtggaatataCGTTGAATTGACGCCTGTGCCCTGTGGGATATATCATAATGCTGTTTATTCATCAATGTTTATGACATTCATTTTGAAAAACTACATCTAATGACTTACTTTTTTTAATACCGGCAGACCGGATAGCTTAAATCATTCATTATTTTGCCTGTTTAATTGTATATTTAatatacatgaataaacacaAAATTATGGACACAAATTGTATTTTGGAATATTTCTAATACATTTCTGAAAGATAGTGTATGTACATTCAGTGTGTATGGATAAGTCATCTCAGAGTTTAAAGACAGATTTGACAATGTTATGAGAATGCAGCAGAAAGAGACTATTCTTACAGTCTGAAATGACATGTATTACTGGTTGTCATTACACAGAGTGCCAGTGAGGTTACCACTCACAAGAGTAAACATTTTACAACT
>TU260270
aacacCGGCTAGCACCACAGCCACCGCTTCTCTCAACCCCAGCACTCAAAATCATCATAACCTTGACCACATACAATAGGTGCAGGTGACAGGCACTTTCCAAAGAGATACATCCCACTGGggacacactggttgaatcaacgttgtttccacgtcatttcaatgaaatggcgttgaaccaacgtgGAATATACGTTGAATTGACGCCTGTGCCCTGTGGGATATATCATAATGCTGTTTATTCATCAATGTTTATGACATTCATTTTGAAAAACTACATCTAATGACTTACTTTTTTTAATACCGGCAGACCGGATAGCTTAAATCATTCATTATTTTGCCTGTTTAATTGTATATTTAatatacatgaataaacacaAAATTATGGACA

Function

NR:

description
PREDICTED: GTP:AMP phosphotransferase AK3, mitochondrial-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596783.2 False 1176 mRNA 0.49 2 15249894 15271273
XM_021596782.2 False 1386 mRNA 0.47 2 15249912 15266545
TU260270 True 391 lncRNA 0.43 2 15262273 15271269

Neighbor

gene id symbol gene type direction distance location
LOC110519918 LOC106578256 coding upstream 37195 15204527 ~ 15212699 (+)
LOC118944493 LOC106578274 coding upstream 108433 15138558 ~ 15141461 (+)
LOC118944490 LOC106578274 coding upstream 111538 15136772 ~ 15138356 (+)
tyrobp tyrobp coding upstream 117614 15115857 ~ 15132280 (+)
LOC110511142 fxyd7 coding upstream 148841 15096725 ~ 15102227 (+)
LOC110519929 LOC106577750 coding downstream 11632 15282905 ~ 15298123 (+)
gapdhs LOC106577739 coding downstream 28335 15299608 ~ 15319903 (+)
LOC110519928 LOC106605633 coding downstream 49090 15320363 ~ 15324018 (+)
sult2st3 LOC106577720 coding downstream 57171 15328444 ~ 15332966 (+)
ncam3 nca11 coding downstream 101187 15372460 ~ 15390084 (+)
G227609 NA non-coding upstream 1892 15247776 ~ 15248002 (+)
G227580 NA non-coding upstream 67380 15181871 ~ 15182514 (+)
G227573 NA non-coding upstream 98313 15151348 ~ 15151581 (+)
G227570 NA non-coding upstream 101608 15148081 ~ 15148286 (+)
G227569 NA non-coding upstream 101899 15147767 ~ 15147995 (+)
G227534 NA non-coding downstream 4887 15276160 ~ 15277190 (+)
G227615 NA non-coding downstream 6799 15278072 ~ 15278362 (+)
G227619 NA non-coding downstream 10400 15281673 ~ 15281989 (+)
G227629 NA non-coding downstream 37948 15309221 ~ 15310171 (+)
G227606 NA other upstream 5612 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 153981 15072005 ~ 15095913 (+)
G227405 NA other upstream 251819 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 258600 14984771 ~ 14991394 (+)
LOC118944476 LOC106605624 other upstream 274917 14942150 ~ 14984145 (+)
zgc:162160 LOC106605640 other downstream 417070 15672260 ~ 15697397 (+)
LOC118944532 NA other downstream 1242230 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1372078 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1523426 16794699 ~ 16801793 (+)
G230916 NA other downstream 3024081 18295354 ~ 18296105 (+)
G227610 NA non-coding upstream 8294 15250931 ~ 15253979 (+)

Expression


Co-expression Network