LOC110519929 (LOC106577750)


Basic Information

Item Value
gene id LOC110519929
gene name LOC106577750
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15282905 ~ 15298123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970221.1
AGTTGAGAAGAAAATCACCCTCGATGTAATACAGATTTGTCCTATCACAAGTGAAAGAAGTAGTTGTGACTTTGGTACGGCATTGACGTTCTTGATAGCTTTACAGTTAATCAGGGAGTGTAGAAACGTGTGTATTCTGATAAGACAGGTACAAGCCCTACGCACAAGGCCATTGGCACTGATATGAAAGAGCCACCAAAGTGGGTAGGGGACGCTTTGCCACTCACCTTAATAGGGGTGACATTGGCTACTCTTAAAATAACACTGCCATTTTGGGGCGGGTAGAGAAGGTGAAGGTGGTGCAGTAGTATATAAAGCTGAGCCAACAGTCTGGTCCTGCTCTGGAGGTTGGGGATTTTACTGTGAGGAAAGTCCCTAGAGTGGCTATAAAGACTCTTCCAAGATTTCGGGGGAAAAGAGGACTGAGCGTTGGACTTCAATAGATTTGGGCAGGCCCTCCACCATGAGTAAAGGGGACTCTTACGACATGTTTGAGATGAATGGAGAGGTGGACGTCAAgatgaagaaaaagaagaagataaAGAAAAAGGATAGGCTAGAGGGCATGAAGAAGGAGATGGACATTGATGACCACGAGATCACAATAGAAGAGCTAGAGATGAGGTATACCACCAGTGTAAGCAAGGGCCTGACCTCCAGCAAAGCTGCGGAGGTTCTGGAGCGGGATGGCCCCAATGAACTGCTGCCCCCCAAAGGGACCCCAGAGTACGTCAAGTTTGCCCGCCAGCTGGCCGGAGGGCTGCAGTGTCTGATGTGGGTGGCAGCCGTGATCTGCTTCATTGCTTTCGGCATCGAGTTCTCCAGGGGAACCCTCGGCTGCTTTGACGATCTGTACCTCGCCATCACTCTGATCACTGTTGTTGTGGTGACTGGCTGTTTCGGTTACTACCAAGAGTTTAAGAGCACCAACATCATCGCCAGCTTCAAAAATCTAGTGCCACAGCAAGCCCTGGTGATCCGTGACGGGCAGAAGAACCAGATCAATGCCATGGACCTGGTGGTGGGAGACCTGGTGGAGATCAAGGGTGGTGACCGCGTGCCTGCTGACATCCGCATCATCTTTGCCCAGGGCTGTAAGGTGGATAACTCATCCCTGACAGGAGAGTCAGAGCCCCAGAGCAAAACCCCGGAGTGTACCCACGAGAACCCCCTAGAGACCAAGAACATTGCCTTCTTCTCTACCACCTGCCTGGAAGGAGTGGCCACAGGAACGGTCATCAACACGGGTGACCGCACCATCATTGGCCGCATTGCCAGCTTAGCGTCAGGCGTAGGCAATGAGAAGACGCCAATTGCCATAGAGATTGAGCACTTTGTTGACATCATTGCTGGGCTGGCCATCTTCTTTGGCTTCACCTTCTTCGTGGTGGCCATGTTTATCGGCTATGCCTTCCTGGAGGCTATGATCTTCTTCATGGCCATCGTGGTGGCCTATGTACCTGAGGGGCTGCTGGCTACTGTCACTgtgTGTCTGTCGCTGACGGCCAAGCGTCTGGCCAGAAAGAACTGTGTGGTGAAGAACCTGGAGGCTGTGGAGACACTGGGCTCCACCTCGGTCATCTGCTCTGACAAGACGGGCACTCTGACGCAGAACAGGATGACCGTGGCCCACCTGTGGTTCGACAATGTGATCCATGCCGCAGACACCACAGAGGACCAATCAGGTCAGAGCTTTGACCAATCATCCGAGACATGGCGATCGTTGGCAAGAGTGGCAGGACTCTGTAACCGGGCCATCTTCAAACCCAACCAGGAGTCTCTGCCGATACCTAGGAGAATAGTGGTGGGCGACGCCTCAGAGACGGCTCTGCTGAAGTTCACTGAGCTGGCCATAGGGAATATGATGGAATACAGGGAGCGATTCAAAAAAGTTGTTGAAGTACCATTCAACTCCACCAACAAGTTCCAGCTGTCAGTGCATGAGTTGGAGGACCCCATGGACTTGCGCTACCTGCTGGTGATGAAGGGGGCGCCAGAGAGGATCTTGGAGCGCTGTTCCACCATCCTGATCAAGGGCCAGGAGATGCCTCTGGAGGAACAGTGGAGAGAGGCCTTCCAGACCGCATACATGGACTTGGGGAGCCTGGGGGAGAGAGTGCTGGGTTTCTGTCACATCTATCTAAATGAGAATGAGTTCCCTCGTGGTTACAAGTTTGACTCTGATGAGATGAACTTCACCACGTCTGGTTTGTGTTTCGCTGGACTCATCTCCATGATCGACCCGCCCCGTGCCACTGTGCCTGACGCTGTCATGAAGTGCCGCACAGCTGGAATAAGGGTAGTCATGGTGACGGGTGACCACCCGATCACGGCCAGAGCCATCGCTGCCAACGTTGGCATCATCACAGAGGGCAGTGAGACAGTAGAGGACATTGCTACCAGGAAACGCATTCCAGTGGAGCAGGTCAACAGGAGGGATGCCCGTGCCTGTGTGATCAGTGGTGGTCAGCTGAAGGACATGAGCAGTGAAGAGCTGGACGAAGCGTTGAGGAGTCACCCTGAAATGGTGTTCGCCCGCACCTCCCCCCAGCCCCCCAGCTCCCCCCCACTCATCATCGTGGAGAGCTGTCAGCGCCtgGGCTCCATTGTGGCTGTGACAGGCGATGGGGTGAACGACTCCCCTGCGTTGAAAAAGGCAGACATCGGTATTGCCATGGGCATAGCTGGCTCCGATGCAGCTAAGAATGCAGCTGACATGATTCTGCTGGATGACAACTTTGCCTCCATCGTCACAGGGGTGGAGCAGGGTCGTCTGATCTTTGACAACCTGAAGAAATCCATTGCGTACACACTGACCAAGAACATTCCGGAGCTCACACCCTACCTCATCTACATCACTGTCAGTGTTCCTCTGCCATTGGGCTGCATCACCATCCTCATGATTGAGCTGGCCACTGACATTTTTCCCTCTGTGTCTCTGGCCTATGAGAAGGCAGAGAGTGATATTATGCATCTGAAACCCAGGAACCCGCGTAAGGATAGGTTGGTGAACGAATCTCTGGCTGCCTACTCCTACTTCCAGATTGGAGCGATCCAGTCTTTCGCTGGTTTCACAGACTACTTTACAGCGATGGCCCAGGAAGGCTGGTATCCTCTGCTGTGTGTGGGGCTCAGGTCCCACTGGGAGAACGTCCATCTGCAGGACCTGCAGGACAGCTATGGCCaggagtggACATACGCCCAGCGTCTGTATCAGCAGTACACTTGCTACACTGTCTTCTTCATCAGTATCGAGATCTGCCAGATCGCTGACGTGTTGATCAGGAAAACCCGCCGTCTGTCCATCTTCCAGCAGGGCTTCTTTAGGAACAAGGTGCTAGTGAGTGCCATCGTCTTCCAGCTGTTACTGGGTAACCTGCTGTGCTACTGCCCAGGGATGCCAAACATTTTCAACTTCATGCCCATTAGGGGCCAATGGTGGTTTGTTCCAATCCCATACGGAATTCTAATCTTTGTCTATGACGAGATCAGAAAGCTGGGGGTCAGAAGACATCCAGGAAGTTGGTGGGACCAGGAGCTGTATTATTGAGAGAAGAGGGCAGATATCTAGACCAGAGCCATAGGTATAAAGATGCAGGTTAGCGTTTtccgtcatgaatcttgttctggaggcagctctgctctgcagtggtcactagctggcacagccacaaagtcataaaatctgattttaatcctaaccctaaccacactgctaaccctagcTAATGGCTAACCCTAAACTGAaattcatttttgttttcatgaatttttacaataaGTCCAATTTGACTTTGCAGCAGGCCTATgaggaaatcgctcagttctgcctctaGGACAAGACACAcaacaataaacgtcaacctgttATACAAACCGAGTCTGGCTAGCAAACTGTCCTCCATCTTGGCCCCAAACATTCCATTACAAACATTGGTGCCATGGTGCCCATTACAATTTAAATATCAAACAAGGTTTGCCAAATTCTATACAAGTGTAGCTCTGAATATCCTAAACCATTTCTGACATGGAACCAAATATTATACATTGAAATAACCATAAATTCTTATGTGATATGTTTTTAAAGACACACCTCCATGTTCtaatacaaaaaaataagaaTTCTTGATGTGAGTTTGTCGTATCaattttaatttagaatcctTTCCTTTTGTAAATCCAGtatgtatatgtctgtgtgtgattgCCTTTTGCTTCTGAATTCCATTGCCTTTTTATGTATAACATCAAACATATTTTCCGTTAAGGGTTCTTTCTTGGTGATAATGTTGGAGTTACAGTAGCTTATAGCaattgtatttctgtatttttatgAATAAAGTGTGTCaaatataa
>TU260365
AGTTTGTCGTATCaattttaatttagaatcctTTCCTTTTGTAAATCCAGtatgtatatgtctgtgtgtgattgCCTTTTGCTTCTGAATTCCATTGCCTTTTTATGTATAACATCAAACATATTTTCCGTTAAGGGTTCTTTCTTGGTGATAATGTTGGAGTTACAGTAGCTTATAGCaattgtatttctgtatttttatgAATAAAGTGTGTCaaatata

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970221.1 False 4356 mRNA 0.50 22 15282905 15298123
TU260365 True 222 lncRNA 0.45 1 15297901 15298122

Neighbor

gene id symbol gene type direction distance location
LOC110519916 LOC106577754 coding upstream 11632 15249894 ~ 15271273 (+)
LOC110519918 LOC106578256 coding upstream 70206 15204527 ~ 15212699 (+)
LOC118944493 LOC106578274 coding upstream 141444 15138558 ~ 15141461 (+)
LOC118944490 LOC106578274 coding upstream 144549 15136772 ~ 15138356 (+)
tyrobp tyrobp coding upstream 150625 15115857 ~ 15132280 (+)
gapdhs LOC106577739 coding downstream 1485 15299608 ~ 15319903 (+)
LOC110519928 LOC106605633 coding downstream 22240 15320363 ~ 15324018 (+)
sult2st3 LOC106577720 coding downstream 30321 15328444 ~ 15332966 (+)
ncam3 nca11 coding downstream 74337 15372460 ~ 15390084 (+)
rbm42 LOC106578518 coding downstream 256627 15554750 ~ 15577801 (+)
G227619 NA non-coding upstream 916 15281673 ~ 15281989 (+)
G227615 NA non-coding upstream 4543 15278072 ~ 15278362 (+)
G227534 NA non-coding upstream 5715 15276160 ~ 15277190 (+)
G227610 NA non-coding upstream 28926 15250931 ~ 15253979 (+)
G227629 NA non-coding downstream 11098 15309221 ~ 15310171 (+)
G227800 NA non-coding downstream 94026 15392149 ~ 15392775 (+)
G227808 LOC106578386 non-coding downstream 98779 15396902 ~ 15441498 (+)
G227844 LOC106577653 non-coding downstream 150393 15448516 ~ 15453530 (+)
G227845 LOC106605585 non-coding downstream 156422 15454545 ~ 15459630 (+)
G227606 NA other upstream 38623 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 186992 15072005 ~ 15095913 (+)
G227405 NA other upstream 284830 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 291611 14984771 ~ 14991394 (+)
LOC118944476 LOC106605624 other upstream 307928 14942150 ~ 14984145 (+)
zgc:162160 LOC106605640 other downstream 390220 15672260 ~ 15697397 (+)
LOC118944532 NA other downstream 1215380 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1345228 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1496576 16794699 ~ 16801793 (+)
G230916 NA other downstream 2997231 18295354 ~ 18296105 (+)

Expression


Co-expression Network