gapdhs (LOC106577739)


Basic Information

Item Value
gene id gapdhs
gene name LOC106577739
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15299608 ~ 15319903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596798.2
GTTTCCAGGGCGATTAGACCAATGCTCGTGTCACGTGTCTGCTATAAATTCGGAAATTGTATTCTCGGTTTGCACAGACACTGCAGCATCTCCCCTCAAGGTTCACCACCACAACCCAATCAACAGCAACTATGTCAGACCTCTGTGTTGGAATCAACGGATTTGGCCGTATTGGCCGCCTGGTCCTCAGGGCCTGCCTGCAGAAGGGAATCAAAGTCGTTGCCATCAACGATCCCTTCATCGACCTGCAGTACATGGTTTACATGTTCAAGTATGACTCCACCCACGGCCGTTACAAAGGTGAGGTGAGCATGGAGGACGGGAAACTGATTGTGGACGACCACTCCATCTCCGTATTCCAGTGTATGAAGCCCCATGAGATCCCATGGGGTAACGCCGGTGCTGATTACGTCGTTGAGTCCACCGGAGTCTTCCTCAGCATTGACAAGGCCTCTTCCCACATCCAGGGTGGTGCCAAGCGGGTGGTTGTGTCTGCCCCCTCCCCCGACGCCCCCATGTTCGTCATGGGAGTCAACGAGGACAAGTACGACCCCTCCAGCATGACCATCGTCAGTAATGCATCTTGCACGACTAACTGCCTGGCCCCCCTGGCTAAGGTCATCCACGACAACTTCGGCATCGAGGAGGCCCTCATGaCCACAGTCCACGCCTACACCGCCACCCAGAAGACAGTGGACGGCCCCTCTGCCAAGGCATGGCGCGATGGCCGTGGTGCCCACCAGAACATCATTCCTGCCTCCACCGGAGCTGCCAAGGCTGTGGGCAAGGTCATCCCTGAGCTCAACGGCAAGCTGACTGGCATGGCCTTCCGTGTGCCCGTGGCTGACGTGTCAGTGGTGGACCTAACCTGCCGCCTGTCCCGGCCCGGCAGCTACGCTGAGATCAAGGAGGCTGTCAAGAAGGCCGCCGAAGGACCCATGAAGGGATACCTGGGGTACACTGAGGACTCTGTTGTGTCTTCTGACTTCATTGGAGACACCCACTCCTCCATCTTTGATGCTGGTGCCGGTATCTCCCTCAATGACAACTTTGTCAAACTCATTTCCTGGTATGACAATGAGTTTGGCTACAGCCACCGCGTCGCTGACCTGTTGCTGTACATGCATTCTAAGGAGTAACTGTCCGGCTCCAGAAAGCTGCAATGGGACCCACCCCCCCTTTTACATGCACTCACACCCTCCAGTGTCACACCCCTAGTACCCCCAGCCCTCCACCACTCTCTACAACACAACTTAGTCTCTGTAGTAGGCTGTGTGTACGAGTATTTGTTTTTCCCTTCATGAAAAAGTCCCACTTTGAGACTGTTTTGACTTGACAGTATGAGTTTCTGTGTCTTCCCAGAGCATTGCCGTAGATGTTTCCATACTGGCTGTTACCATGTAATGTTGGTGTTAAAGATTTCTAGTTTAAGAGTCAAGTGAGAAAGACAAGCTATTGTAactaaaaaaaataatacttcTGTAGAATCTTTACAAATGTCTTTGTCTTGCcttgttgttgttcatgtttcCTGTTTGCCAGTGTTATAAGAACATGTTTTCACACAATGGCAAATAAGTCGTCATCTGCATTCAAGATAATCAACAGGATGCAGAACATGAAGGTGATGCATTATAAAGTGACAATTGTA
>XM_021596797.2
GTGTCACTAAGGAGGATGGAGAGGCAGCCATCTCCAGATGATGGGATGGGCCTTTTTCATCACTGCGATGGTGAAGGTCGTATCATACTGTTCACCACCACAACCCAATCAACAGCAACTATGTCAGACCTCTGTGTTGGAATCAACGGATTTGGCCGTATTGGCCGCCTGGTCCTCAGGGCCTGCCTGCAGAAGGGAATCAAAGTCGTTGCCATCAACGATCCCTTCATCGACCTGCAGTACATGGTTTACATGTTCAAGTATGACTCCACCCACGGCCGTTACAAAGGTGAGGTGAGCATGGAGGACGGGAAACTGATTGTGGACGACCACTCCATCTCCGTATTCCAGTGTATGAAGCCCCATGAGATCCCATGGGGTAACGCCGGTGCTGATTACGTCGTTGAGTCCACCGGAGTCTTCCTCAGCATTGACAAGGCCTCTTCCCACATCCAGGGTGGTGCCAAGCGGGTGGTTGTGTCTGCCCCCTCCCCCGACGCCCCCATGTTCGTCATGGGAGTCAACGAGGACAAGTACGACCCCTCCAGCATGACCATCGTCAGTAATGCATCTTGCACGACTAACTGCCTGGCCCCCCTGGCTAAGGTCATCCACGACAACTTCGGCATCGAGGAGGCCCTCATGaCCACAGTCCACGCCTACACCGCCACCCAGAAGACAGTGGACGGCCCCTCTGCCAAGGCATGGCGCGATGGCCGTGGTGCCCACCAGAACATCATTCCTGCCTCCACCGGAGCTGCCAAGGCTGTGGGCAAGGTCATCCCTGAGCTCAACGGCAAGCTGACTGGCATGGCCTTCCGTGTGCCCGTGGCTGACGTGTCAGTGGTGGACCTAACCTGCCGCCTGTCCCGGCCCGGCAGCTACGCTGAGATCAAGGAGGCTGTCAAGAAGGCCGCCGAAGGACCCATGAAGGGATACCTGGGGTACACTGAGGACTCTGTTGTGTCTTCTGACTTCATTGGAGACACCCACTCCTCCATCTTTGATGCTGGTGCCGGTATCTCCCTCAATGACAACTTTGTCAAACTCATTTCCTGGTATGACAATGAGTTTGGCTACAGCCACCGCGTCGCTGACCTGTTGCTGTACATGCATTCTAAGGAGTAACTGTCCGGCTCCAGAAAGCTGCAATGGGACCCACCCCCCCTTTTACATGCACTCACACCCTCCAGTGTCACACCCCTAGTACCCCCAGCCCTCCACCACTCTCTACAACACAACTTAGTCTCTGTAGTAGGCTGTGTGTACGAGTATTTGTTTTTCCCTTCATGAAAAAGTCCCACTTTGAGACTGTTTTGACTTGACAGTATGAGTTTCTGTGTCTTCCCAGAGCATTGCCGTAGATGTTTCCATACTGGCTGTTACCATGTAATGTTGGTGTTAAAGATTTCTAGTTTAAGAGTCAAGTGAGAAAGACAAGCTATTGTAactaaaaaaaataatacttcTGTAGAATCTTTACAAATGTCTTTGTCTTGCcttgttgttgttcatgtttcCTGTTTGCCAGTGTTATAAGAACATGTTTTCACACAATGGCAAATAAGTCGTCATCTGCATTCAAGATAATCAACAGGATGCAGAACATGAAGGTGATGCATTATAAAGTGACAATTGTA

Function

NR:

description
glyceraldehyde-3-phosphate dehydrogenase isoform X1

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0006096 glycolytic process biological_process
GO:0035606 peptidyl-cysteine S-trans-nitrosylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0050821 protein stabilization biological_process
GO:0005829 cytosol cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0050661 NADP binding molecular_function
GO:0035605 peptidyl-cysteine S-nitrosylase activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0008017 microtubule binding molecular_function
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity molecular_function

KEGG:

id description
K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596798.2 False 1651 mRNA 0.51 11 15299608 15319903
XM_021596797.2 True 1640 mRNA 0.52 11 15300653 15319903

Neighbor

gene id symbol gene type direction distance location
LOC110519929 LOC106577750 coding upstream 1485 15282905 ~ 15298123 (+)
LOC110519916 LOC106577754 coding upstream 28335 15249894 ~ 15271273 (+)
LOC110519918 LOC106578256 coding upstream 86909 15204527 ~ 15212699 (+)
LOC118944493 LOC106578274 coding upstream 158147 15138558 ~ 15141461 (+)
LOC118944490 LOC106578274 coding upstream 161252 15136772 ~ 15138356 (+)
LOC110519928 LOC106605633 coding downstream 460 15320363 ~ 15324018 (+)
sult2st3 LOC106577720 coding downstream 8541 15328444 ~ 15332966 (+)
ncam3 nca11 coding downstream 52557 15372460 ~ 15390084 (+)
rbm42 LOC106578518 coding downstream 234847 15554750 ~ 15577801 (+)
arhgap33 LOC106578439 coding downstream 258509 15578412 ~ 15619099 (+)
G227619 NA non-coding upstream 17619 15281673 ~ 15281989 (+)
G227615 NA non-coding upstream 21246 15278072 ~ 15278362 (+)
G227534 NA non-coding upstream 22418 15276160 ~ 15277190 (+)
G227800 NA non-coding downstream 72246 15392149 ~ 15392775 (+)
G227808 LOC106578386 non-coding downstream 76999 15396902 ~ 15441498 (+)
G227844 LOC106577653 non-coding downstream 128613 15448516 ~ 15453530 (+)
G227845 LOC106605585 non-coding downstream 134642 15454545 ~ 15459630 (+)
G227846 LOC106577653 non-coding downstream 138005 15457908 ~ 15462932 (+)
G227606 NA other upstream 55326 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 203695 15072005 ~ 15095913 (+)
G227405 NA other upstream 301533 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 308314 14984771 ~ 14991394 (+)
LOC118944476 LOC106605624 other upstream 324631 14942150 ~ 14984145 (+)
zgc:162160 LOC106605640 other downstream 368440 15672260 ~ 15697397 (+)
LOC118944532 NA other downstream 1193600 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1323448 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1474796 16794699 ~ 16801793 (+)
G230916 NA other downstream 2975451 18295354 ~ 18296105 (+)

Expression


Co-expression Network