ncam3 (nca11)


Basic Information

Item Value
gene id ncam3
gene name nca11
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15372460 ~ 15390084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596792.2
GGTGCATGATCTGAACCGAAAATGTTAAGGGGTGTGGATTTGAGCAGGGGAGGGCAGCATGCAGAGATTTTAGAGATTGTGGGGTCCCTGTCTGCCTCCCCGGTTCTCTCCTCTTGCCTATAAAAGCATGAAATAtatgtttccaccactgttgtTTTCGCGCGCAATTGCATGCAGCAGGTGTCAAGGACTACATCGATCCATTAATTGAGGATAGTGACAACGTTGAAGTAGAAATGGCTGAATCGATGCTCATCTTGAGAATGTGTTCCATAATGCTGGTCCTTGGTTTTTCAGAGGCCAAAATGGAAATCATCACCAGCAAAGCAGATTTGTTGCTGGGTGAGAATGCCATGCTCCTCTGCAAAGctggtggggaaggagacatCACCTGGCAGAAAGATGGAGAGGATGCTGAAGAAGACCAGATTGAGAAAGTGGATGAGACATCGTCAAAACTGTTAATCAGGAATGCCAAGATGGAGGATGCAGGACGGTACACATGCTTATGTGATTTTGACACCGgtcacagagatcatacatcttATACCATCTTTGTCTATGAGCGGCCATCCTTCGGGGAAACACTGGCCTACCATGAGTTCCTGGAGGGTCAAGATGTGGTCATCACCTGCATGGTCACTGGCAAACCGGTGGTGGAAGTCAACTGGGAGAGGGACCATGAGAAACTGCACTCTGAAGCAGGTCGGATCACAAAACTAAAAGACAACTCTCTAcagatcaacaacatcaacaggaAGGATCGAGGAACATATACCTGTGAGGCTAAAATCAAGGACCGGCCCATTTTCGAAAAGCTCGACATCTCCATCTCTGTCAACGTTCCTCCCACAGCGAAGATCCATGAGGAGGTGAAGAAAGTCACGGCCGGACCAGAGACCAATGTCTCCCTCAGCTGCCTGGTCGAGGGAGTCCCCCAACCGAACATCATCtggacagtCCCAGACTCTTCAGATGAGTCCCGCTACAAGTACAACTCAGACAAGAGCGAGCTCATTATCTCGTCCGTTGTCAGGAGCGACTACGGAGAGTACATCTGCACGGCCAAGAATAAAATCTCAGAGAGCAGTGCCATGATCATGCTGGATGTCTCAGAGCATCCTGTAGCAGTGCTGAGCCAGAAGAAGATGGAGCTGGAGCCAGGCCAGACTCTCTCAGTGTCATGTAACGTCTCAGGACACCCGATGCCCGCGCTGCAGTGGGTCAGGAAGACCAACAATGACCACCTGCTAACAGTGGACGCTGGTGGAGGTCGAGTGAGAATGGAGGATGGCTATGTCCTGGTAGTTGACAATGTGACGTCTTCAGATGGAGGGCTGTACAGCTGCATGGCTATCAGTCCTGCTGGCAACGCCTCCACAGACTTCAGCCTGCAGAcctggccAGGTAAAGCATCCCAGGTAAGTGGCACCCCAGGGCCCACATCGGTCCACTTCACCCTGGGGGCTTCCCTGGTGGACGGGGGCTCTCCCATCACCCACTTCACCCTCCAGTGGAAGACAGGACGTGATAACAATTGGGAGGAGAGAGTCATCCAGTCCACAGACCCCCTGGTTATCAAAGATCTGAATCCCTACACCACCTACTCTGTCCGGTTTGCCCCACAGAACCACCTGGGTCAGGGAGGCTTCTCCGAAGAGCTCACCGTCCGCACACAGGGCATACGaGGGGAACCAGACAGCCCGGTCCTGGTGGCAAGCGAGGGGAAGGTTGAGGGCAATATGTTCTCAATCCCTTTACCGCAGTTGAACAACGGAGGCTCCCCCATTACCCACTACACCGTCCGCTACAGAGTGaATAAGGTGGACGAGGACTGGAGGGAGAAGGACCTGCCGTCCAACTCGACAATGATCAACCTCCATGACCTGCAGTATAAATCAGACTACCACGTGGAGGTGCTCGCCGTCAACCCCTACGGCTCCTCCAGCCCCGCCAAGCTAAACTTCAACGTCCCACAGCCTGTAGCCAAGATGAATAAGGGTGGGATGGGGAAAGGGGCTGTGGCAGGCATTGTCATAGCCATCTTCTTGGCGCTATTGATCGCTGTGGACGCCACCTGTTGCTATACCAACCACTGCGGCATGCTGATGTTCCTGGCTGTCAAGCTGTTTGGGCAGAAGGTCCCTGGGATGAAGACTGTGGAGGAGGGGGACGGCACCTCTAATGGGAAGGCGTCCCCCAATGGAGATCCTGTCACTGAGGCCTGAGATACTGAACAGGAAGTGACATCCTAGTATCTGAAGAATGGAACCTGTAAATGTCAAAGTAGAAAGGAGGAAGTATTGTGAGTTGAGGGGTCTTAGTTAAATGTTTTTGGAGAGTTCCCAGGACAGTCCATGTTGAGAAAGGATAAGGATTCGGAAAGTTATCTGTGAACTGTAATGTCTAACATTGACAGATTGTTGTAATTTCATCCAGCCTTGTGTAATCTCCTGTTAAGTGTTACATTTCCTTGCTTTTATGTTTCAGTACATTCATGTTATATTTCAGTACATTCATGTTATATTTCAGTACATTAAGGCGGCTGTAAATTGTCAGGGAGACCTTCGTAGTTCATTAATTGAATCATAACTCATTATTTATTGAAGTCTATATTCACTTTAATCTGCAAAAAAATCTGTAAGTGACATATCATTATTTAATAAGGACATTTTATCCTAACATATTAACAATATAcagcagggctgcccaaccctcttacTGGAGATCtgctgtcctgtaggttttcagtcccaaccctaatttagcatatctTATTCAGCtggttaaggtcttgttgagcagctaattagtagaatcaggtgtgttaaatcagggttggactgaaaacccacaggacggtagatctccaggaagagggtggGCAGCcctgatatacagtatacagcatAATCACATTAACAAATAACAACGTGTCAAAATGACATCTCTTCAAGTGTTGTAATCATGCGGAATATACAGAGCTCATATATTACAGAGCTATATGATGTGCTTATTTTTAACCTAATCTGTTGTTAAATTGCAAATTGCTCATATAATAATTTTATGTTTGTATTTGTTTAATTATCCACTTTTTTACAGTTTCTTTTGTACATTGTACACTGTACATTGTttgtacatacacatacagtataacagctatgcattttgctatttaaaaaatgtgaaataaaaacatGCTGTTTTTCATT
>XM_021596790.2
GTGCATGATCTGAACCGAAAATGTTAAGGGGTGTGGATTTGAGCAGGGGAGGGCAGCATGCAGAGATTTTAGAGATTGTGGGGTCCCTGTCTGCCTCCCCGGTTCTCTCCTCTTGCCTATAAAAGCATGAAATAtatgtttccaccactgttgtTTTCGCGCGCAATTGCATGCAGCAGGTGTCAAGGACTACATCGATCCATTAATTGAGGATAGTGACAACGTTGAAGTAGAAATGGCTGAATCGATGCTCATCTTGAGAATGTGTTCCATAATGCTGGTCCTTGGTTTTTCAGAGGCCAAAATGGAAATCATCACCAGCAAAGCAGATTTGTTGCTGGGTGAGAATGCCATGCTCCTCTGCAAAGctggtggggaaggagacatCACCTGGCAGAAAGATGGAGAGGATGCTGAAGAAGACCAGATTGAGAAAGTGGATGAGACATCGTCAAAACTGTTAATCAGGAATGCCAAGATGGAGGATGCAGGACGGTACACATGCTTATGTGATTTTGACACCGgtcacagagatcatacatcttATACCATCTTTGTCTATGAGCGGCCATCCTTCGGGGAAACACTGGCCTACCATGAGTTCCTGGAGGGTCAAGATGTGGTCATCACCTGCATGGTCACTGGCAAACCGGTGGTGGAAGTCAACTGGGAGAGGGACCATGAGAAACTGCACTCTGAAGGTCGGATCACAAAACTAAAAGACAACTCTCTAcagatcaacaacatcaacaggaAGGATCGAGGAACATATACCTGTGAGGCTAAAATCAAGGACCGGCCCATTTTCGAAAAGCTCGACATCTCCATCTCTGTCAACGTTCCTCCCACAGCGAAGATCCATGAGGAGGTGAAGAAAGTCACGGCCGGACCAGAGACCAATGTCTCCCTCAGCTGCCTGGTCGAGGGAGTCCCCCAACCGAACATCATCtggacagtCCCAGACTCTTCAGATGAGTCCCGCTACAAGTACAACTCAGACAAGAGCGAGCTCATTATCTCGTCCGTTGTCAGGAGCGACTACGGAGAGTACATCTGCACGGCCAAGAATAAAATCTCAGAGAGCAGTGCCATGATCATGCTGGATGTCTCAGAGCATCCTGTAGCAGTGCTGAGCCAGAAGAAGATGGAGCTGGAGCCAGGCCAGACTCTCTCAGTGTCATGTAACGTCTCAGGACACCCGATGCCCGCGCTGCAGTGGGTCAGGAAGACCAACAATGACCACCTGCTAACAGTGGACGCTGGTGGAGGTCGAGTGAGAATGGAGGATGGCTATGTCCTGGTAGTTGACAATGTGACGTCTTCAGATGGAGGGCTGTACAGCTGCATGGCTATCAGTCCTGCTGGCAACGCCTCCACAGACTTCAGCCTGCAGAcctggccAGGTAAAGCATCCCAGGTAAGTGGCACCCCAGGGCCCACATCGGTCCACTTCACCCTGGGGGCTTCCCTGGTGGACGGGGGCTCTCCCATCACCCACTTCACCCTCCAGTGGAAGACAGGACGTGATAACAATTGGGAGGAGAGAGTCATCCAGTCCACAGACCCCCTGGTTATCAAAGATCTGAATCCCTACACCACCTACTCTGTCCGGTTTGCCCCACAGAACCACCTGGGTCAGGGAGGCTTCTCCGAAGAGCTCACCGTCCGCACACAGGGCATACGaGGGGAACCAGACAGCCCGGTCCTGGTGGCAAGCGAGGGGAAGGTTGAGGGCAATATGTTCTCAATCCCTTTACCGCAGTTGAACAACGGAGGCTCCCCCATTACCCACTACACCGTCCGCTACAGAGTGaATAAGGTGGACGAGGACTGGAGGGAGAAGGACCTGCCGTCCAACTCGACAATGATCAACCTCCATGACCTGCAGTATAAATCAGACTACCACGTGGAGGTGCTCGCCGTCAACCCCTACGGCTCCTCCAGCCCCGCCAAGCTAAACTTCAACGTCCCACAGCCTGTAGCCAAGATGAATAAGGGTGGGATGGGGAAAGGGGCTGTGGCAGGCATTGTCATAGCCATCTTCTTGGCGCTATTGATCGCTGTGGACGCCACCTGTTGCTATACCAACCACTGCGGCATGCTGATGTTCCTGGCTGTCAAGCTGTTTGGGCAGAAGGTCCCTGGGATGAAGACTGTGGAGGAGGGGGACGGCACCTCTAATGGAGACTTGAAGTTGAATGGGCTAGGACTACAGAGGGATAGCATCCCAAATCTGCAGACACAAAATGGGGAAAAGAATGGGTTGCAGGCGGAGGTCACGTGCGACAAAGCGCCCCTCACCAAATTCGAGAAGGCGTCCCCCAATGGAGATCCTGTCACTGAGGCCTGAGATACTGAACAGGAAGTGACATCCTAGTATCTGAAGAATGGAACCTGTAAATGTCAAAGTAGAAAGGAGGAAGTATTGTGAGTTGAGGGGTCTTAGTTAAATGTTTTTGGAGAGTTCCCAGGACAGTCCATGTTGAGAAAGGATAAGGATTCGGAAAGTTATCTGTGAACTGTAATGTCTAACATTGACAGATTGTTGTAATTTCATCCAGCCTTGTGTAATCTCCTGTTAAGTGTTACATTTCCTTGCTTTTATGTTTCAGTACATTCATGTTATATTTCAGTACATTCATGTTATATTTCAGTACATTAAGGCGGCTGTAAATTGTCAGGGAGACCTTCGTAGTTCATTAATTGAATCATAACTCATTATTTATTGAAGTCTATATTCACTTTAATCTGCAAAAAAATCTGTAAGTGACATATCATTATTTAATAAGGACATTTTATCCTAACATATTAACAATATAcagcagggctgcccaaccctcttacTGGAGATCtgctgtcctgtaggttttcagtcccaaccctaatttagcatatctTATTCAGCtggttaaggtcttgttgagcagctaattagtagaatcaggtgtgttaaatcagggttggactgaaaacccacaggacggtagatctccaggaagagggtggGCAGCcctgatatacagtatacagcatAATCACATTAACAAATAACAACGTGTCAAAATGACATCTCTTCAAGTGTTGTAATCATGCGGAATATACAGAGCTCATATATTACAGAGCTATATGATGTGCTTATTTTTAACCTAATCTGTTGTTAAATTGCAAATTGCTCATATAATAATTTTATGTTTGTATTTGTTTAATTATCCACTTTTTTACAGTTTCTTTTGTACATTGTACACTGTACATTGTttgtacatacacatacagtataacagctatgcattttgctatttaaaaaatgtgaaataaaaacatGCTGTTTTTCATT
>XM_021596791.2
GCATGATCTGAACCGAAAATGTTAAGGGGTGTGGATTTGAGCAGGGGAGGGCAGCATGCAGAGATTTTAGAGATTGTGGGGTCCCTGTCTGCCTCCCCGGTTCTCTCCTCTTGCCTATAAAAGCATGAAATAtatgtttccaccactgttgtTTTCGCGCGCAATTGCATGCAGCAGGTGTCAAGGACTACATCGATCCATTAATTGAGGATAGTGACAACGTTGAAGTAGAAATGGCTGAATCGATGCTCATCTTGAGAATGTGTTCCATAATGCTGGTCCTTGGTTTTTCAGAGGCCAAAATGGAAATCATCACCAGCAAAGCAGATTTGTTGCTGGGTGAGAATGCCATGCTCCTCTGCAAAGctggtggggaaggagacatCACCTGGCAGAAAGATGGAGAGGATGCTGAAGAAGACCAGATTGAGAAAGTGGATGAGACATCGTCAAAACTGTTAATCAGGAATGCCAAGATGGAGGATGCAGGACGGTACACATGCTTATGTGATTTTGACACCGgtcacagagatcatacatcttATACCATCTTTGTCTATGAGCGGCCATCCTTCGGGGAAACACTGGCCTACCATGAGTTCCTGGAGGGTCAAGATGTGGTCATCACCTGCATGGTCACTGGCAAACCGGTGGTGGAAGTCAACTGGGAGAGGGACCATGAGAAACTGCACTCTGAAGCAGGTCGGATCACAAAACTAAAAGACAACTCTCTAcagatcaacaacatcaacaggaAGGATCGAGGAACATATACCTGTGAGGCTAAAATCAAGGACCGGCCCATTTTCGAAAAGCTCGACATCTCCATCTCTGTCAACGTTCCTCCCACAGCGAAGATCCATGAGGAGGTGAAGAAAGTCACGGCCGGACCAGAGACCAATGTCTCCCTCAGCTGCCTGGTCGAGGGAGTCCCCCAACCGAACATCATCtggacagtCCCAGACTCTTCAGATGAGTCCCGCTACAAGTACAACTCAGACAAGAGCGAGCTCATTATCTCGTCCGTTGTCAGGAGCGACTACGGAGAGTACATCTGCACGGCCAAGAATAAAATCTCAGAGAGCAGTGCCATGATCATGCTGGATGTCTCAGAGCATCCTGTAGCAGTGCTGAGCCAGAAGAAGATGGAGCTGGAGCCAGGCCAGACTCTCTCAGTGTCATGTAACGTCTCAGGACACCCGATGCCCGCGCTGCAGTGGGTCAGGAAGACCAACAATGACCACCTGCTAACAGTGGACGCTGGTGGAGGTCGAGTGAGAATGGAGGATGGCTATGTCCTGGTAGTTGACAATGTGACGTCTTCAGATGGAGGGCTGTACAGCTGCATGGCTATCAGTCCTGCTGGCAACGCCTCCACAGACTTCAGCCTGCAGAcctggccAGGTAAAGCATCCCAGGTAAGTGGCACCCCAGGGCCCACATCGGTCCACTTCACCCTGGGGGCTTCCCTGGTGGACGGGGGCTCTCCCATCACCCACTTCACCCTCCAGTGGAAGACAGGACGTGATAACAATTGGGAGGAGAGAGTCATCCAGTCCACAGACCCCCTGGTTATCAAAGATCTGAATCCCTACACCACCTACTCTGTCCGGTTTGCCCCACAGAACCACCTGGGTCAGGGAGGCTTCTCCGAAGAGCTCACCGTCCGCACACAGGGCATACGGGAACCAGACAGCCCGGTCCTGGTGGCAAGCGAGGGGAAGGTTGAGGGCAATATGTTCTCAATCCCTTTACCGCAGTTGAACAACGGAGGCTCCCCCATTACCCACTACACCGTCCGCTACAGAGTGaATAAGGTGGACGAGGACTGGAGGGAGAAGGACCTGCCGTCCAACTCGACAATGATCAACCTCCATGACCTGCAGTATAAATCAGACTACCACGTGGAGGTGCTCGCCGTCAACCCCTACGGCTCCTCCAGCCCCGCCAAGCTAAACTTCAACGTCCCACAGCCTGTAGCCAAGATGAATAAGGGTGGGATGGGGAAAGGGGCTGTGGCAGGCATTGTCATAGCCATCTTCTTGGCGCTATTGATCGCTGTGGACGCCACCTGTTGCTATACCAACCACTGCGGCATGCTGATGTTCCTGGCTGTCAAGCTGTTTGGGCAGAAGGTCCCTGGGATGAAGACTGTGGAGGAGGGGGACGGCACCTCTAATGGAGACTTGAAGTTGAATGGGCTAGGACTACAGAGGGATAGCATCCCAAATCTGCAGACACAAAATGGGGAAAAGAATGGGTTGCAGGCGGAGGTCACGTGCGACAAAGCGCCCCTCACCAAATTCGAGAAGGCGTCCCCCAATGGAGATCCTGTCACTGAGGCCTGAGATACTGAACAGGAAGTGACATCCTAGTATCTGAAGAATGGAACCTGTAAATGTCAAAGTAGAAAGGAGGAAGTATTGTGAGTTGAGGGGTCTTAGTTAAATGTTTTTGGAGAGTTCCCAGGACAGTCCATGTTGAGAAAGGATAAGGATTCGGAAAGTTATCTGTGAACTGTAATGTCTAACATTGACAGATTGTTGTAATTTCATCCAGCCTTGTGTAATCTCCTGTTAAGTGTTACATTTCCTTGCTTTTATGTTTCAGTACATTCATGTTATATTTCAGTACATTCATGTTATATTTCAGTACATTAAGGCGGCTGTAAATTGTCAGGGAGACCTTCGTAGTTCATTAATTGAATCATAACTCATTATTTATTGAAGTCTATATTCACTTTAATCTGCAAAAAAATCTGTAAGTGACATATCATTATTTAATAAGGACATTTTATCCTAACATATTAACAATATAcagcagggctgcccaaccctcttacTGGAGATCtgctgtcctgtaggttttcagtcccaaccctaatttagcatatctTATTCAGCtggttaaggtcttgttgagcagctaattagtagaatcaggtgtgttaaatcagggttggactgaaaacccacaggacggtagatctccaggaagagggtggGCAGCcctgatatacagtatacagcatAATCACATTAACAAATAACAACGTGTCAAAATGACATCTCTTCAAGTGTTGTAATCATGCGGAATATACAGAGCTCATATATTACAGAGCTATATGATGTGCTTATTTTTAACCTAATCTGTTGTTAAATTGCAAATTGCTCATATAATAATTTTATGTTTGTATTTGTTTAATTATCCACTTTTTTACAGTTTCTTTTGTACATTGTACACTGTACATTGTttgtacatacacatacagtataacagctatgcattttgctatttaaaaaatgtgaaataaaaacatGCTGTTTTTCATT

Function

NR:

description
neural cell adhesion molecule 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596792.2 False 3212 mRNA 0.47 15 15372460 15390084
XM_021596790.2 False 3334 mRNA 0.47 16 15372461 15390084
XM_021596791.2 True 3332 mRNA 0.47 16 15372463 15390084

Neighbor

gene id symbol gene type direction distance location
sult2st3 LOC106577720 coding upstream 39494 15328444 ~ 15332966 (+)
LOC110519928 LOC106605633 coding upstream 48442 15320363 ~ 15324018 (+)
gapdhs LOC106577739 coding upstream 52557 15299608 ~ 15319903 (+)
LOC110519929 LOC106577750 coding upstream 74337 15282905 ~ 15298123 (+)
LOC110519916 LOC106577754 coding upstream 101187 15249894 ~ 15271273 (+)
rbm42 LOC106578518 coding downstream 164666 15554750 ~ 15577801 (+)
arhgap33 LOC106578439 coding downstream 188328 15578412 ~ 15619099 (+)
zmp:0000000951 LOC106578502 coding downstream 242479 15632563 ~ 15636625 (+)
ppox LOC106605668 coding downstream 246652 15636736 ~ 15644078 (+)
zgc:162160 LOC106605640 coding downstream 282176 15672260 ~ 15697397 (+)
G227629 NA non-coding upstream 62289 15309221 ~ 15310171 (+)
G227619 NA non-coding upstream 90471 15281673 ~ 15281989 (+)
G227615 NA non-coding upstream 94098 15278072 ~ 15278362 (+)
G227534 NA non-coding upstream 95270 15276160 ~ 15277190 (+)
G227800 NA non-coding downstream 2065 15392149 ~ 15392775 (+)
G227808 LOC106578386 non-coding downstream 6818 15396902 ~ 15441498 (+)
G227844 LOC106577653 non-coding downstream 58432 15448516 ~ 15453530 (+)
G227845 LOC106605585 non-coding downstream 64461 15454545 ~ 15459630 (+)
G227846 LOC106577653 non-coding downstream 67824 15457908 ~ 15462932 (+)
G227606 NA other upstream 128178 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 276547 15072005 ~ 15095913 (+)
G227405 NA other upstream 374385 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 381166 14984771 ~ 14991394 (+)
LOC118944476 LOC106605624 other upstream 397483 14942150 ~ 14984145 (+)
LOC118944532 NA other downstream 1123419 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1253267 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1404615 16794699 ~ 16801793 (+)
G230916 NA other downstream 2905270 18295354 ~ 18296105 (+)

Expression


Co-expression Network