rbm42 (LOC106578518)


Basic Information

Item Value
gene id rbm42
gene name LOC106578518
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15554750 ~ 15577801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970322.1
TGGCGAAAGCATCATATTTCAATAAGTATGGCGATGAAATCCGGAGAGGAGCGGTTGAAGGAGATGGAGGCTGAAATGGCTCTGTTTGAGCAGGAGGTCCTGGGGGGTCAAGTGGCAATGACTGCAGGAGACCCTGTAGTGATGGAGGTGCTCCCTATGGGTGTTCCTATGGCTGTTCCTATGATCCGGCCCATCATCGGCACCAACACCTACCGACAGgtCCAGCAAACCTTGGATGCAAGGGCTGCCACTTTCGTGGGACCTCCACCCCCTGCATTTGTAGGCCCAGCTATAACCCCAGGTGTCAGACCACCGCCAATGATGAGACCAGCGTTTATGCCGCACATCCTgcagagaccagGGGGTCCAAGGATGCCTATGATGCGTGGTCCCCCTCCACAGGGTATGATGGCTCCCCCACTGCCACGCCCTCCTCCTCCCCCGCCCATGATGATGGCACCCCCCATGCAAGGACCCCCTCAGCATCCCATGGACCCAATGGGGCATATGAGCTCAGGAGGACCCCCGGTGGGATCGACACATGGTACACCCATGGGACACTCCATGGTGTCTGCACCCTCAAGGTCTGTGACCCAGGCCCCTCCCAAGCTCACCCCCTCCATCATCTCTGCGGCCCCCACTGTCTACACGGCTCCCTCCGGACCAAAGATACCAGACATCCATGCCCAGAGAAAGGCTCGCATGGAGGAGCTGGCAGCGTCTGTAGCAGAACAGCAGGCAGCGGTGATGGCCGCCGGACTGCTGGAGGCTAAGAAGGAGGCCAGCCTAGCCGCCTCAGATGACAACGTTATCGGACCCAGCATGCCAGAGCCCGAGCCCGTCCACACTGAGCCAGTGGACAGCACagcagaggagaagaagaagggtaAGCAAGAGAAGGCGAAGAAGTGTATCCGTACAGCCGCAGGCACCAGCTGGGAGGACCAGAGTCTACTGGAGTGGGACTCAGATGATTTCAGAATCTTCTGTGGAGACCTTGGCAATGAGGTGAACGACGACATCCTGGCAAGGGCATTCAGCCGCTACCCCTCCTATCTGAAAGCCAAGGTGGTGCGTGACAAACGCACTGGCAAGACCAAGGGCTATGGCTTTGTCAGCTTCAAGGACCCCAATGACTACGTCCGCGCCATGAGGGAGATGAACGGGAAGTATGTGGGCAGCAGACCCATCAAACTGAGAAAGAGCATGTGGAAGGACAGGAACATGGAAGTTGTACGcaagaaacagaaggagaaaaaGAAACTGGGACTGAGATAG
>XM_021592776.2
CTGCCGGAAAACCACACGAAGAAGATCAGACACCCTGGAACAGACCCAACCACACCGTCGGAATGGAACGCAACCAAGACACTCACGTCATAATAATGCGACTAGCTATTTTGGACAACGTTGGCCTCGGTTTGTAGGGACGGACAAATACAACAATTCATGCTTTATTTAAATAGCTAGTTAAGATTCAAGAGTTTTGGAACGTCACGATTTAGGTAAGTATGGCGATGAAATCCGGAGAGGAGCGGTTGAAGGAGATGGAGGCTGAAATGGCTCTGTTTGAGCAGGAGGTCCTGGGGGGTCAAGTGGCAATGACTGCAGGAGACCCTGTAGTGATGGAGGTGCTCCCTATGGGTGTTCCTATGGCTGTTCCTATGATCCGGCCCATCATCGGCACCAACACCTACCGACAGgtCCAGCAAACCTTGGATGCAAGGGCTGCCACTTTCGTGGGACCTCCACCCCCTGCATTTGTAGGCCCAGCTATAACCCCAGGTGTCAGACCACCGCCAATGATGAGACCAGCGTTTATGCCGCACATCCTgcagagaccagGGGGTCCAAGGATGCCTATGATGCGTGGTCCCCCTCCACAGGGTATGATGGCTCCCCCACTGCCACGCCCTCCTCCTCCCCCGCCCATGATGATGGCACCCCCCATGCAAGGACCCCCTCAGCATCCCATGGACCCAATGGGGCATATGAGCTCAGGAGGACCCCCGGTGGGATCGACACATGGTACACCCATGGGACACTCCATGGTGTCTGCACCCTCAAGGTCTGTGACCCAGGCCCCTCCCAAGCTCACCCCCTCCATCATCTCTGCGGCCCCCACTGTCTACACGGCTCCCTCCGGACCAAAGATACCAGACATCCATGCCCAGAGAAAGGCTCGCATGGAGGAGCTGGCAGCGTCTGTAGCAGAACAGCAGGCAGCGGTGATGGCCGCCGGACTGCTGGAGGCTAAGAAGGAGGCCAGCCTAGCCGCCTCAGATGACAACGTTATCGGACCCAGCATGCCAGAGCCCGAGCCCGTCCACACTGAGCCAGTGGACAGCACagcagaggagaagaagaagggtaAGCAAGAGAAGGCGAAGAAGTGTATCCGTACAGCCGCAGGCACCAGCTGGGAGGACCAGAGTCTACTGGAGTGGGACTCAGATGATTTCAGAATCTTCTGTGGAGACCTTGGCAATGAGGTGAACGACGACATCCTGGCAAGGGCATTCAGCCGCTACCCCTCCTATCTGAAAGCCAAGGTGGTGCGTGACAAACGCACTGGCAAGACCAAGGGCTATGGCTTTGTCAGCTTCAAGGACCCCAATGACTACGTCCGCGCCATGAGGGAGATGAACGGGAAGTATGTGGGCAGCAGACCCATCAAACTGAGAAAGAGCATGTGGAAGGACAGGAACATGGAAGTTGTACGcaagaaacagaaggagaaaaaGAAACTGGGACTGAGATAG
>XM_036970319.1
CTATTTTGGACAACGTTGGCCTCGTAAGTATGGCGATGAAATCCGGAGAGGAGCGGTTGAAGGAGATGGAGGCTGAAATGGCTCTGTTTGAGCAGGAGGTCCTGGGGGGTCAAGTGGCAATGACTGCAGGAGACCCTGTAGTGATGGAGGTGCTCCCTATGGGTGTTCCTATGGCTGTTCCTATGATCCGGCCCATCATCGGCACCAACACCTACCGACAGgtCCAGCAAACCTTGGATGCAAGGGCTGCCACTTTCGTGGGACCTCCACCCCCTGCATTTGTAGGCCCAGCTATAACCCCAGGTGTCAGACCACCGCCAATGATGAGACCAGCGTTTATGCCGCACATCCTgcagagaccagGGGGTCCAAGGATGCCTATGATGCGTGGTCCCCCTCCACAGGGTATGATGGCTCCCCCACTGCCACGCCCTCCTCCTCCCCCGCCCATGATGATGGCACCCCCCATGCAAGGACCCCCTCAGCATCCCATGGACCCAATGGGGCATATGAGCTCAGGAGGACCCCCGGTGGGATCGACACATGGTACACCCATGGGACACTCCATGGTGTCTGCACCCTCAAGGTCTGTGACCCAGGCCCCTCCCAAGCTCACCCCCTCCATCATCTCTGCGGCCCCCACTGTCTACACGGCTCCCTCCGGACCAAAGATACCAGACATCCATGCCCAGAGAAAGGCTCGCATGGAGGAGCTGGCAGCGTCTGTAGCAGAACAGCAGGCAGCGGTGATGGCCGCCGGACTGCTGGAGGCTAAGAAGGAGGCCAGCCTAGCCGCCTCAGATGACAACGTTATCGGACCCAGCATGCCAGAGCCCGAGCCCGTCCACACTGAGCCAGTGGACAGCACagcagaggagaagaagaagggtaAGCAAGAGAAGGCGAAGAAGTGTATCCGTACAGCCGCAGGCACCAGCTGGGAGGACCAGAGTCTACTGGAGTGGGACTCAGATGATTTCAGAATCTTCTGTGGAGACCTTGGCAATGAGGTGAACGACGACATCCTGGCAAGGGCATTCAGCCGCTACCCCTCCTATCTGAAAGCCAAGGTGGTGCGTGACAAACGCACTGGCAAGACCAAGGGCTATGGCTTTGTCAGCTTCAAGGACCCCAATGACTACGTCCGCGCCATGAGGGAGATGAACGGGAAGTATGTGGGCAGCAGACCCATCAAACTGAGAAAGAGCATGTGGAAGGACAGGAACATGGAAGTTGTACGcaagaaacagaaggagaaaaaGAAACTGGGACTGAGATAGACAATGTTTCccttgtgtatgtatgtgcaagTGTTTTTTGACTGGGAGTGTGTGAGAATCACACTGATGGCCTAATACAGTTGCCAGGCCACTCATCCAACTATCTGACATGTTTTCAATTACCACATAGTGGGGATGTCATTTTACTCATGGAACATGGTTAAACTAGGCTACGAAACACTGTACATGGCACTGGCCCTGGTTGCAATGGTTAGAAATGAACCATGCCCGTATGAAGTTTAGAATTTActgatttccatttttttttattttaacattttaattTGTAAATAATTTCTGAACATCACTCAGATTTTCTTAGTTGGTATGGCTCCTATGCATCTCAGATGTCTGAAATGTGAGATTGGTGATCTCATGTATGTATATGCTATTGTGGAAACTACTTCCAATGGCAATTATGTATTTCCGGGTAGCCTCTGTTATTCATACAGCAAaccattatttttttaaaatataaaatcGAAATGTTTGTACATTAAAGTGGCTTATTTTGAAGCAGTGGATTCAAACCAATGCAACGTTTTTAAAATAAACCAAATAGCTTGACA

Function

NR:

description
PREDICTED: RNA-binding protein 42-like

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K25079 RBM42; RNA-binding protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970322.1 False 1278 mRNA 0.57 11 15554750 15577232
XM_021592776.2 False 1472 mRNA 0.56 11 15566065 15577232
XM_036970319.1 True 1849 mRNA 0.51 11 15566170 15577801

Neighbor

gene id symbol gene type direction distance location
ncam3 nca11 coding upstream 164666 15372460 ~ 15390084 (+)
sult2st3 LOC106577720 coding upstream 221784 15328444 ~ 15332966 (+)
LOC110519928 LOC106605633 coding upstream 230732 15320363 ~ 15324018 (+)
gapdhs LOC106577739 coding upstream 234847 15299608 ~ 15319903 (+)
LOC110519929 LOC106577750 coding upstream 256627 15282905 ~ 15298123 (+)
arhgap33 LOC106578439 coding downstream 611 15578412 ~ 15619099 (+)
zmp:0000000951 LOC106578502 coding downstream 54762 15632563 ~ 15636625 (+)
ppox LOC106605668 coding downstream 58935 15636736 ~ 15644078 (+)
zgc:162160 LOC106605640 coding downstream 94459 15672260 ~ 15697397 (+)
fbl fbrl coding downstream 128504 15706305 ~ 15710237 (+)
G227911 NA non-coding upstream 13926 15540336 ~ 15540824 (+)
G227881 NA non-coding upstream 49365 15491365 ~ 15505385 (+)
G227846 LOC106577653 non-coding upstream 91818 15457908 ~ 15462932 (+)
G227845 LOC106605585 non-coding upstream 95120 15454545 ~ 15459630 (+)
G227844 LOC106577653 non-coding upstream 101220 15448516 ~ 15453530 (+)
G227963 NA non-coding downstream 48663 15626464 ~ 15628330 (+)
G227962 NA non-coding downstream 50627 15628428 ~ 15628719 (+)
G227971 NA non-coding downstream 74797 15652598 ~ 15702948 (+)
LOC110503805 LOC106605641 non-coding downstream 133786 15711043 ~ 15788655 (+)
G228011 NA non-coding downstream 162419 15740220 ~ 15740681 (+)
G227606 NA other upstream 310468 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 458837 15072005 ~ 15095913 (+)
G227405 NA other upstream 556675 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 563456 14984771 ~ 14991394 (+)
LOC118944476 LOC106605624 other upstream 579773 14942150 ~ 14984145 (+)
LOC118944532 NA other downstream 935702 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1065550 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1216898 16794699 ~ 16801793 (+)
G230916 NA other downstream 2717553 18295354 ~ 18296105 (+)

Expression


Co-expression Network