zmp:0000000951 (LOC106578502)


Basic Information

Item Value
gene id zmp:0000000951
gene name LOC106578502
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15632563 ~ 15636625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592762.2
CTTGGTCAACATTGAAGTGAATGGGGTTCAGATGTTATTCCTAAAGAACTTACCACCTCGGCAAACCTCCAGAAGACAAGGATTACTCAATACAAGAGGAAAAAACACTGTAGTGATATTAGCCTTAAAATCAAGTCTGCATATCATTTTATTTTATCTCTGCAAGGGAGATGAACTGAGCTCATGATGACTGGGAAACTGAGTGAAGAAATGGTGGAGCTGCTGCTTGCACCATGGCGATCGTCTCCACGGGCGACGGGACTGGAGGGCAAGCTGGTGGCGGCGTTGGAACTGTATGACCACTTCCCTTTAGATGTGGCTGTTACTGGGGGAACCCAGGAGGCCAACACTCAACTGGCCAGAGCACTGTGTGGGTTAggaaatgaggaggaggaggaggaggaagaggaggaggaggaggaagaggaggaggaggaggagaaaagtgAGGATGAGGAAGCTAGTGATGATGATGAAATTGAGATTTCGGGGACTCTGACTAAAGTGtttgagagagaaggaaaaggacAGGTTAAGGAAAGTGATCAGGACGACAACAAGAGAGATGACCCTCCCACTGAGAACCAACCGATCGTCCTGCACCCCAAATCACCAATGGTCCTGCACCCTAAAATCCCCAACATTCGGATTTGGACAATTCCAAGCCTCGATGGCCAAAACCACCCTATTGAACACTTCGATGTGTTGGTGGTCCTCACCTCAGTGCAGCACCAGGACAACCTCTCAGGGCCTATCATGGAGCTCCGCAACAGGGACCAACCGCTGTTCTTAGTCAGAGCTGAACAGGAGTGGGACCTGGTCCAGGAGAAGCTCACAGGACCCTGTAAGACCTGTGcctgggagagaatgagagcccGTCAGATGGAGATTGAGAGGAAGAGGCTGGCAGCCACAGCTGGAGATGCTGAAGTCCCAGAGGATGTGAAGCAAACGTTACTAGAATTAAGGGAAATTGGAGCGACCATGACTACAGCGCTGCCTGAGCTGAGAAAGAAAGCCTTCTGTCAGTTCATGGTGGATGTTTTCAGAGAAAACAGAGTTCCAAAACTGCTGAGGAATGACgaacaGTCTCTGCTGTCAGCTGGACTGAGAATGGACAAGCTGCGTCCGGGGGACATTGATCAGAATGGACACCTGTTCCAGTCCAGAGATCTGACCAACCCTCCATCCAGACTTCTCTCCGCCCTCACGGCCTTGGAGCACCTCCGACTGGACCTGGGGGTCCTGGGGCAGACGGGTTGCGGAAGCTCCAGCCTAGTCAACTCCCTCCTGGGCTTGAAGAACCAGGACGAGAGGGCGTCTCCCACTGGAGTCACTGAAACCACCATGGAGGCTCTGGGGTTCCCACACCCTGAGCTGCCTAATGTCTGGCTGTGGGATCTACCAGGCATGGGCAGGGTGGGGGAACTGGCTCCCTCATCGACCAAAACAGATCAGAAGGCTCTTTCATCTTCTCCGCAACCTCCATCTCCATTCCCTCCGATGTCGCTGACTCCTCTGCACCCACTATGTGATGTCTACATCCTGGTCTCGCCTCTCAGGCTTAGCCAGGTCTGTGTCCAGCTGCTGCAGAGTCTGTCAGCTCAGGGGAGGATGTGCTACCTGGTCCTCTCCAAGGCTGACCTAATGGGGGAAGGAGCTGTTGAAGAGGTTAGAAGGTGGAGTGAGGAGGCCCTAGGTCGACTAGGCCTCAAACATACCACTTTCCTGGTGTCAGCTCTCCACCCAGGGGAGTTGGACTTCCCCAGGCTGCAGGAGCTATTGTGTAGTGCACTGACTTCCCACAGAAAGGCTGCCCTTGTTCATTATGTTGTAGAACTTTTGGAATCAGAGGTGTGGGGGGGAAAGGACCAGGCAGACCCTTGTAAGCTTCAGTGACATGTAATTTCAACAAactatatttgttttgttttatttaacctttaattaactagctatatagctaggtacattgttttttttatctgTCTCCTGTTGTATCAAAGCCATGATGTGAGACGTCAGAGGCTCTGGATAATCTGAATGACTGGGTCCATGTTCTATAttaaaatctaaatcaaatctaagtttattGGTAGTGTACATGAATTTAAAAttgaatcaaattgtatttatcacatatgccaaatacaaccttacagtgaaatgcttacttacaagattTGCAGGTGTTATGGCAGGAGCAGCAAAACACTTatatctccaacagtgcagtagaatgtctcacaaatacaatacaaatgtaCAAATAATCATTGTATGGTAAAGTTGTATCCAGTTTATGAAGGTATGGGTCATTTTGGTTTTaagcaaataaaaataaataaattaaatacaa

Function

NR:

description
uncharacterized protein LOC110512282

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592762.2 True 2359 mRNA 0.48 3 15632563 15636625

Neighbor

gene id symbol gene type direction distance location
arhgap33 LOC106578439 coding upstream 13464 15578412 ~ 15619099 (+)
rbm42 LOC106578518 coding upstream 54762 15554750 ~ 15577801 (+)
ncam3 nca11 coding upstream 242479 15372460 ~ 15390084 (+)
sult2st3 LOC106577720 coding upstream 299597 15328444 ~ 15332966 (+)
LOC110519928 LOC106605633 coding upstream 308545 15320363 ~ 15324018 (+)
ppox LOC106605668 coding downstream 111 15636736 ~ 15644078 (+)
zgc:162160 LOC106605640 coding downstream 35635 15672260 ~ 15697397 (+)
fbl fbrl coding downstream 69680 15706305 ~ 15710237 (+)
LOC110503805 LOC106605641 coding downstream 74418 15711043 ~ 15788655 (+)
zp3d.1 LOC106605642 coding downstream 155219 15791844 ~ 15795523 (+)
G227962 NA non-coding upstream 3844 15628428 ~ 15628719 (+)
G227963 NA non-coding upstream 4233 15626464 ~ 15628330 (+)
G227911 NA non-coding upstream 91739 15540336 ~ 15540824 (+)
G227881 NA non-coding upstream 127178 15491365 ~ 15505385 (+)
G227846 LOC106577653 non-coding upstream 169631 15457908 ~ 15462932 (+)
G227971 NA non-coding downstream 15973 15652598 ~ 15702948 (+)
G228011 NA non-coding downstream 103595 15740220 ~ 15740681 (+)
G228032 NA non-coding downstream 164736 15801361 ~ 15801855 (+)
G228034 LOC106578507 non-coding downstream 178662 15815287 ~ 15817140 (+)
G227606 NA other upstream 388281 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 536650 15072005 ~ 15095913 (+)
G227405 NA other upstream 634488 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 641269 14984771 ~ 14991394 (+)
LOC118944476 LOC106605624 other upstream 657586 14942150 ~ 14984145 (+)
LOC118944532 NA other downstream 876878 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 1006726 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 1158074 16794699 ~ 16801793 (+)
G230916 NA other downstream 2658729 18295354 ~ 18296105 (+)

Expression


Co-expression Network