zp3d.1 (LOC106605642)


Basic Information

Item Value
gene id zp3d.1
gene name LOC106605642
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15791844 ~ 15795523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592725.2
CAGTCTAGTTTGCTAACAACAGTGTGTCCACGAGGCGCTCTGGACTACAgagttttattattttatttctgcgGTCACGTTGAACATGGCGCAAGTTGCGTGGATGTTTTGTCTGTTTGCATGGATTTTTTCTGCCTTTCCATTCACACAAGTATCAGCGGAAGCTGATTTTAATGTTGACCGATGGGAGGGTCAAGTGCATCAAGACTACCAATTTGCGGAGCGGGACCTCCTGGGCAATGTACCAGTGCGTGAGGTGATCAAGCCTCGGATAGGGGAAGACGATGCCATCGGTGCCCAGCGGTCAGAACCACCATACTACTTCCTTCCCATGTTCCAGCACTCGGCGGTTCCCGTCGTCGATAGGGACTTGTTCAGACCAGTCGTCGGGAAAATACGTTTCCCCAGTATCTTCACCACCCTCTTGTTTCCACCACAAAATAGTCCAGAGCGCAACCACTTCTCTCCCGTGCGTAATCCGCGTGGAGTGGAGGTGTGGTGCGGGTACAACCAGATCTCCGTGCGCATCAACAGAAGTCAGCTCAGGTTTAGGTGTCTGGCCTCCATGCTCTTCCTGGGCACTTGCCCCGTCACCCGGGTCACCCCACTTTTCTTTTACTTCCATTATGACTTGAATGACTGTGGCAGTACTCAAACGACCATGAATGGCCAGCTGGTGTACTCCAGCTCACTTCGCTTTTCTCCAGAACCACAAGGGCCAGTGATAAGAGCCATACCTCTCAACCTCCCCATTCAGTGCATATATAACCGATTCCACTACTCCTACAAAGTTGGCTATGTACCTGAGGTGCATGACCGCAATCTCTTGAAGAGTATGAATGGCAAACACATCTTTAGGCTCACTGCATGCAATGAGCAATGGGAACAATTGTCATCAGAAGAGGGCTATATGCTTGGGGAGCCAATGTACTTCAAAGCCTACGCTGCTTTTGTCCCCAAAGATGAGAGTGTGTTTGTTGATTCCTGCTTTGTTACGACATCCAATGACCCAAATGCCACACCTCGCCTTGAAGTCATTCACAACTTTGGATGTATGGTGGACAGCAAGCGGAAAGGCAGTCAGTCCCAGTTCTTCTCCAGAGAGTCAAATGTCCTGCGCTTCACTGTGGATGCTTTCCTGTTTCCCCAAATCACTGCCAAGCATCTCTACCTGCACTGTACTATGACTGTCATGAAATCCACTTCTAAGTGGAGCGCCAAGTCCTGCACGTACAATAGAGCAGTGGGAAGGTGGGAGGAGCTGTATGGCCCTCCCTCTGTGTGCTCCTGCTGTGATTCTGTCTGTGAAGTGTCAGAGTTTTGGCCAGCCTTGACATCTCCTTCAGTGAAAAGCCTGATCACCAGTAAACCCTGGAGAGTGTTGGAGGACAGGGAGAAGAGTTTGCCCATTCAGGCTGAGGAGAGACAGGCAGATGgtgaggagagggtggaggagaccTTGGCAGTTACTTatagagtggagaaggagaagtTTAAAAGCTTGGCAGTCGCTCCTTGGGAGGAGGAGAAAAACATGTCAGTTGCTGTTATGAATAAGGTAGAGGAGGTGCAGGAAGGGACAGTtctaggagaggagggggtggtagCCAGAAAAGAAGGGAGTGTGGAGGAGCCGATTGATGACAAACGGGCTGAGAAGGAGATGATTGAGGTGGCAGCTGACGAGCTTGGCACAGACCAAGTGACATCAAGTGTAACTTTGGAACATGTACCTGAGGAGAATACTGTGACGGTTAAGGAGGTAGCTCAGTGGAACATGTCGAGTGTCACCATGAATGCTAAGGTGTCAAAGAAAGCTAAGGAGCAGGTTGCTGGGATAGAAGGGTCAAAGGTTGAGAGAGTGGGGGTTGGACAGATGCCTTTGGTGGACGAAGCGGCAGCATTTCTGCAGGGGTACATGGAGCCTGCCGAGTGGAGAGAAGATTACCAAGGACCAGCCCTAGAGGAAGAGCTGGGGAGGTTTTGGAAACCATCCACAAAGGACAAGCTTGCTGTGCTGGAAACTTCTGTCCCTATTGGAACATTAACTTTAAATTAAATATTTCATAAGAATTACACCTAAGTGTCCTTGTATGATTGAATATTAAATTACCCCTGATATAAGCAGTGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592725.2 True 2132 mRNA 0.49 9 15791844 15795523

Neighbor

gene id symbol gene type direction distance location
LOC110503805 LOC106605641 coding upstream 3189 15711043 ~ 15788655 (+)
fbl fbrl coding upstream 81607 15706305 ~ 15710237 (+)
zgc:162160 LOC106605640 coding upstream 94447 15672260 ~ 15697397 (+)
ppox LOC106605668 coding upstream 147766 15636736 ~ 15644078 (+)
zmp:0000000951 LOC106578502 coding upstream 155219 15632563 ~ 15636625 (+)
LOC110512192 LOC106578478 coding downstream 3422 15798945 ~ 15801186 (+)
LOC110512168 LOC106578482 coding downstream 35310 15830833 ~ 15844953 (+)
LOC110512131 LOC106605648 coding downstream 50697 15846220 ~ 15853237 (+)
LOC110512109 LOC106605649 coding downstream 66096 15861619 ~ 15864453 (+)
LOC110512078 stx12 coding downstream 71732 15867255 ~ 15878522 (+)
G228011 NA non-coding upstream 51163 15740220 ~ 15740681 (+)
G227971 NA non-coding upstream 88896 15652598 ~ 15702948 (+)
G227962 NA non-coding upstream 163125 15628428 ~ 15628719 (+)
G227963 NA non-coding upstream 163514 15626464 ~ 15628330 (+)
G228032 NA non-coding downstream 5838 15801361 ~ 15801855 (+)
G228034 LOC106578507 non-coding downstream 19764 15815287 ~ 15817140 (+)
G228223 NA non-coding downstream 29781 15825304 ~ 15825708 (+)
G228414 NA non-coding downstream 370500 16166023 ~ 16166365 (+)
G228451 NA non-coding downstream 431383 16226906 ~ 16229345 (+)
G227606 NA other upstream 547562 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 695931 15072005 ~ 15095913 (+)
G227405 NA other upstream 793769 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 800550 14984771 ~ 14991394 (+)
LOC118944532 NA other downstream 717980 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 847828 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 999176 16794699 ~ 16801793 (+)
G230916 NA other downstream 2499831 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 2774486 18569698 ~ 18588248 (+)

Expression


Co-expression Network