LOC110512192 (LOC106578478)


Basic Information

Item Value
gene id LOC110512192
gene name LOC106578478
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15798945 ~ 15801186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970414.1
ATTGAAGAGATCAACAACTCCACATTGCTGTTGCCTGGTGTCAGCCTGGGATATGAGATTTTTGACTATTGCTCTGACTTGCTCAGTTATGGGGCTGCTCTGGACTTTCTGACCCAAAAGGGAAGAGGAGGCATCCCCGTGTGGAACGGTACAAACTACAGACCTAAAGTCATCTCAGTCACTGGCCCGTTTGGAAGCAGCCAAACCATCAGTGTCGCCCCTCTGTACATGTCTGAGATGATTCTAATGGTGACTCATGGGGCATCAAGTGTCTAACAGAGCTCCAAAAACAGATTTCCCTCCTTTTTCCGAACTATTCCCAGCGACAAATATCAGGTGGAGTCTATAGTCCGTATACTCCAACAATTTAACTGGAACTGGGTGGCTTTCATCGGTGGTAATGACTACAGCAGAGATGCCTTGACAGTTTTTCAGGATAAGATTAGACCAGCTAACATCTGTTTGGCGTACCAAGGCACCGttccccaaaaccaatccttaatAGGGCGTCTATTCAACAACATAGCCATGTTCAATGTCCAGGTTATTGTAGTCTTTGCCAATGTGGAGTTTGTCATTCCTTTCATCCAAAAGGCCATAGATCTCAGAGTGAAGGAGAAGATATGGATCGCTAGTGAGACATGGTCCAACAGGTCAAATTCAAATTGGACAATCAAAGTATAGAGATTGATGAGAACGGGGACCCACCGGCTCATTACGACATTGTACACTGGGactgcaaaaataaaatatgttctAATGTGGACATTGGCTCATACCTTACCAACCCCACACCAAGCTTCCACATTAATGCAACTCTCATACATTGGTTTGAGGGCACAAAGGTTAGTACTTCTTCAAACTGGCTTCCACACCTGCTGTTTTGAGTGTGAGATCTGCTCTGATGGAAAGTACATCAACCACACAGGTACTGAGCAACATTGTTTttgcctggagtttttccttgaCAGGTCAATCCGTCAGAAAGAACACCTGGCACCATTTATTACCTATGAATCACATGACAAAAATTGTTATCTGTACACATATTAGAATCTGTCACCCagttctcttcccttcctctcccaacAGCCGATCCCTACAGCTGCATAGAATGCAAAAGGATGAGTGGGCCAGGAATGGCAGTACCTCATGCACTAAGCGCTCTATAGAGTATCTGCATTCTGATGCTCCATTGGCCATTTGTCTGATGTTCCAGGCCATTTCCATCATCCTCATCTCAATTACCATCTTGGTTCTGTTCCTTTGTAAGCATGACACCCCTGTGGTAAAGTCAGCCGGTGGGAGGCTCTGCttcttcatgttgtgttgcttgtCCATGTCCTCCTCCAGCGTCTTCCTCTACATCGGCAAACCCACAGAGGCCATCTGCACCTTACGCAATTCTGTGTTTATAGTCTTCTATGTGGCCTGCCTGTCCTGTCTTGCTGTTCGCTCCTTCCAGATTGTCTGTATCTTCAAAATGGCCGCCAAACTGCCCAAAGCGTATGATTTCTGGGTCAAGCATGGTGGTCAGTGGATCACTATTATCACAACCACTGTCATAATGCTGTTTCTGTGCATTTTGTGGATAGCCATTGAAGGACCCAAGCCCAATCAGATAACATTGTATAGCGAGGTAATTTTGGATTGCACATATGGAGTCATCCCCATCTTTTATGGGATAGTACTGTTTGCCGTTTTGCTGGGTATTGCATGCTTTAGTTTTGCCTACATGGGAACTGACCTGCCCAAAAACTACGAGGGTAAATCTATCACTTTCAGCTTGCTTATCTTCTTCATCTCTTGGGTCATCTCTCTGACGGTGCACCTGTCCACCAAAGGAAAGCACACACTCTCCGTCAATCCTTTCTCTGTGCTGTGCAGTCTGTATGGTCTACTCTTACCTAAATGTTTGGTTACTTCTTCCCTAAATGGTTACTTCTTCCCTAATCATTATCATTACACCTGAGCATAATACAGCAGCCTATTTTCAAACTGCAATCCAGAGTTACACACTTCAACCTAGATAATGTACAGATGTTGAGACATATGACTTGTGTTGT

Function

NR:

description
PREDICTED: taste receptor type 1 member 1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970414.1 True 2066 mRNA 0.45 2 15798945 15801186

Neighbor

gene id symbol gene type direction distance location
zp3d.1 LOC106605642 coding upstream 3422 15791844 ~ 15795523 (+)
LOC110503805 LOC106605641 coding upstream 10290 15711043 ~ 15788655 (+)
fbl fbrl coding upstream 88708 15706305 ~ 15710237 (+)
zgc:162160 LOC106605640 coding upstream 101548 15672260 ~ 15697397 (+)
ppox LOC106605668 coding upstream 154867 15636736 ~ 15644078 (+)
LOC110512168 LOC106578482 coding downstream 29647 15830833 ~ 15844953 (+)
LOC110512131 LOC106605648 coding downstream 45034 15846220 ~ 15853237 (+)
LOC110512109 LOC106605649 coding downstream 60433 15861619 ~ 15864453 (+)
LOC110512078 stx12 coding downstream 66069 15867255 ~ 15878522 (+)
LOC110512064 LOC106578487 coding downstream 84839 15886025 ~ 15888715 (+)
G228011 NA non-coding upstream 58264 15740220 ~ 15740681 (+)
G227971 NA non-coding upstream 95997 15652598 ~ 15702948 (+)
G227962 NA non-coding upstream 170226 15628428 ~ 15628719 (+)
G227963 NA non-coding upstream 170615 15626464 ~ 15628330 (+)
G228032 NA non-coding downstream 175 15801361 ~ 15801855 (+)
G228034 LOC106578507 non-coding downstream 14101 15815287 ~ 15817140 (+)
G228223 NA non-coding downstream 24118 15825304 ~ 15825708 (+)
G228414 NA non-coding downstream 364837 16166023 ~ 16166365 (+)
G228451 NA non-coding downstream 425720 16226906 ~ 16229345 (+)
G227606 NA other upstream 554663 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 703032 15072005 ~ 15095913 (+)
G227405 NA other upstream 800870 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 807651 14984771 ~ 14991394 (+)
LOC118944532 NA other downstream 712317 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 842165 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 993513 16794699 ~ 16801793 (+)
G230916 NA other downstream 2494168 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 2768823 18569698 ~ 18588248 (+)

Expression


Co-expression Network