LOC110512168 (LOC106578482)


Basic Information

Item Value
gene id LOC110512168
gene name LOC106578482
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15830833 ~ 15844953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592719.2
CTGTCTACGCTTGATAATAGCACCTGCATATAACAACGGCCAGTATTTCCCCGGATTGTTACTGTAATGGGTGTTGTATCGAACACCGAGACAGACAGGATGTGGAGCTGAAAGAAAGAAGGCGGAGAATAGTTCAAAGTCGCTGGAAACATTGTCGCAAAATCCGAAAGGATTGCAATGGAACGATTACCTTTATTTAGAATAAACTAATAACGAAAGGCTTGGGATTTCCAAACATGCCACCGTGCTGATGCCATGGTGGCAGATGGGAACGTTTTACCTGTCATTACTCCTTTTGTCTCCATGGATAGGACCCCAGCAAGCCTAGAGGAATGTAGATGAAGAGTGATTCGGCCTCCAACATAAAGTTATCCCTCCACTGAACCAAATAGGGCTGTTTATACACAAAGAGTTTAGCCTAGCAACCGGCTGCCACCATGATGATATCCAGGCTGGTCTGGGTGTGCCTGGCACTGATAGGGGCGAGGAGCTGCCACGCCCACAGTCTATTCACCTGTGAACCCATCAAGGTGCATCGCTGCCTGGGGATGCTCTACAACATGACTTTCTTCCCCAACATGATGGAGCACTATGACCAGGACATAGCAGCCAGCAGGATGGAGCCCTTCATGCCGCTGGTCAACCTGCGCTGCTCTCCGGACGTACATCACTTCCTGTGTCAGGCCTTTATCCCAGCATGCACTGAGGACACCAAAGTGATCCGGCCATGTCGCGACCTGTGTGAGAAAGTGAGGTCAGACTGCAGGAAGGACATCAGCACCTTCGGCATCACCTGGCCTCCGGAGCTGCAGTGCGACAGGTTGGAAGATTGCCTCTACTCTCCAGATGGCTCAGTCCTGCCACCAACCAGAGTGACCACACCCAAGACCTCTCTGTCTGCCAAGAGGGACATGGGCTTCTGGTGCCCCCTTCAGCTGAAGACCCGACCCGGCCAGGGATCCACGTTCCTGGGTGCCGGGGACTGCGCTCCCCCTTGCTCCAACATGTACTTCAAGCCCCATGAAATCGAGTTCGCCAAGACCTTCATCGGGGTGTGCTCCATCGTCTGCCTCTGCGCCACGCTCTTCACCTTTCTCACCTTCCTCATCGACGTCAAACGCTTCCGCTACCCCGAACGGCCAATCATCTTCTACGCCGTGTGCTACAGCTTCGTGTCGCTCATCTACTTCATCGGCTTCCTGCTGGGGAACAATGCATCCTGCAACAAGGCGGTGCACCCGGCTGCCATGGACACGGTAGTGCTGGGCTCCCAGAGTAAAGGCTGTACGTTACTCTTCATGCTACTCTACTTCTTCTCCCTGGCCGGCATCGTCTGGTGGGTCATCCTCACCATCACCTGGTTCCTGGCCGCCGGGCCCAAGTGGAGCTGCGAGGCCATCGAGAAGAAGGCGGTGTGGTTCCACTCTGTCGCTTGGGGGATCCCCGGAGCACTAACCGTCATGCTACTGGCTCTCAACAAGGTGGAGGGAGATAATATCAGCGGGGTGTGCTTCGTGGGTCTCTATGATCTGGACGCGCTGCGGTACTTTGTGCTGGCGCCACTGTGTATCGGGGTTGTGGTTGGGCTGTCTCTGCTCCTGGCTGGGATTGTGTCGCTCAACAACGTGCGTCAGGTGATCCAGCACGATGAGAGGAACCAGGAGAAGCTGAAGAAGTTTATGATCCGTATTGGGGTGTTCAGTGGTCTGTACCTGGTGCCCCTGGTCACTCTGCAGGGGTGTTATATCTATGAACAGAGCCAGCGCTCCACCTGGGAAAACACCTGGATCAATGACCGTTGCCAGGAGTACAGCATTCCCTGCTCACACAAGACTACAGAGTCTGGTCGTCCAGACCTGTCCCTATTCCTAATTAAATACCTGATGACCCTGGTGGTTGGGATCTCAGCTGTGTTCTGGGTCAGCAGCAAGAAGACCTGCTCAGAATGGGCCTTCTTCTTCAACAGGACCAGGAAGAAAGACCCCATTAGTGAGAGCCGCAGAGTTCTCCAGGAGTCCTGTGAGTTCTTCCTCAAACACAACAGCCGTGTCCAGCACAAGAAGAACCACTACAACCCCGGCTCCCACAAACTCAAGGTCATCTCCAAGTCCATGGGCACCAGCACTGGTGCCTCAGCCACAGGCAACCACGGCACCTCAGCAGTGGGCAACCATGAGGCCATCCGGGGACAGGCTTCTTTCTCAGAGGCCAGGGGCTCATCTGAGGCCTCCGCCAGGGAGCAGCTGGAGAGGGGCAGCTCCACCCGTGGCTCCaggctgagggagagggagaagcagcCCAGTGGACAGGCCCTgtctggggggagagagggggcagagagacgtAGTAAGAAGGGCAGCTCCAGCAAGGTTAGCAGCCGCTCAGAGAGCTTCCACAGAGTCCCAGAGGGAAGGATGACTCCCCGGAGTGAACTATCAGAGACGAGACAGATGCCCAGTGGACAGCACCTGGCTTTAAGCCACTCCCACAGCGGCAGTGTGAAAGGCTCCGTCCCTCACCTGGTTCGCCAGTTACCAGAGGAGAAAAAGGACAAGGACAGCAGCTGTTGAGCCCAACCAGCAGGCTCCTATGATACTTAACACCAACAAAGATGGGGGACTCTGGTCCTCAGGGGCTGGActgagtgtctgctggtttttgttcTGTTCTTCCTTTCAAATGAGCAACTGATTTAACCTGTCATACCATACCAGATGTGTACACTTGGAACAATCAGTGATATTAGTGGATCGATTCAGTAcctgagggagaatagagagttgAGAAAATCCAAAGGACAGGAGTTTTCCTTCACACCACAGAGACGGGAAGGAAGAGACTAGGTGGGCCACCAAGGTCCTAGAGTTCCCTTCAGTGACCGACCCAACAGGTGTAGCTACTGTACATCAGTCAGCTTGACTGGATCACTGGACACATCAAGGTGAATGAGGTTAGAGAATCATGCAGCTCTTCAGACCAACAGTTGCATTTCCCTGCTGTAAAACAGTCACTTCGGTTGACATATTGTTTATTTACTTATGAAAGCTGTACTTTTCTGAGGGTAGATTGATATGTAAAGTGTGTCGAATATACACTGGCAATATTTATGTAAACTATTTTATTTTCTATCACTGGACTAGTCTTTACACTGAGTTTAAGCGCTTGAAAATCTGAAAATCGTGAAGGTTTCACCAAACAATCAGAACTTCAACAATATCTAGCTGTGGTGGTtaactctttttattttatttttgtattcaaATGGTTAATGTCATGTATATGTAGACAATTCCATCATGAAACAATGAGAAGCAAGCATAGCAGTTCTGTAGTTAAAGTAATTGCAGTAGACAGGAGGTTCTCACTACCAATACAATCAGTATGCTACTCTACTTTTCATTCCTTTTCCATTAGTGTTTTTCAGTATCTCTATAAATAGTTACATAAGCATTTTTCAATTTGCTGACTCTCGTCATTAACTTAATTTCCAGTAAATCTTAGTGGAGCATGTGTTTTTTTTATACTACAGTTTCTAGAAGAATGTGCCTTGTGAACTAAATCATGGTTTTCAGATAACCTACTTTTTGTCTGTCTACCTACAGATGCTTTACATGTGTGACAGTCATTCCATGTGCGTATTCATCTCCAGTGAAATATGTGGACAAAGTAACCAGGCTTATTTCTGGCTCTTGACCTTATGTAAGTTGTTGTGGTTGGACATCTCACTACACTAGAGGAGTTACCACTTAGAGATGAACCCAGTGCAAATACTGAGTGATACTGTACAATTTGTACAGAGATCGAATGTCTTTTTTTGGAGTTTATATTTCTGTTACGCAATTATCGTTAAACCAAATATAGTAGTATGTATACCTAACATAACTGATGATACAATATGAAAACACCAGTAGAAAAAATCAGAGACGAAATCCAATCCAAAGCATGTACCTAGTTGAGttgatatttttttacaaatgtgtGGGTTTTGTTCAGTATTTCAATTGTCATGATTCTTACCGGTAATCCATGAATTGTGTTTGACAGTACACATTTTCCTTGCAAGCATTTTCCCGAAAGGCCTGTTGGGAATAAGTCTTGTACACTGTATTAATACATCCATACATACTCACAATCATTTGATAAGTATTTGAATCCCTCCCATGCTGAATTGTTTTATTGTCTTTAATCTGACCCTGTCCTTGATCTTCATCCATATCTATTGTATATGATTATGTGGCTATCAGAAGACAAAGGTTCCAGCTAAAGGGAATGTGTTATCTTGCTTCCACTCCTTCACAAATGAATAATATAACCACTACTCATCCTTGATTGGTTGACTTGTTTAGGCTAtacattttttgtatatatattttaaattcccTATACATTTTTGTGAACTTTTGTAGTCTTATGTTGTATGTACTATTTGATATATATTTTGTATCAATTATATTTCCTTTTAATAAAAGATTAttgaatcaaataaaa
>XM_021592714.2
GTCTACGCTTGATAATAGCACCTGCATATAACAACGGCCAGTATTTCCCCGGATTGTTACTGTAATGGGTGTTGTATCGAACACCGAGACAGACAGGATGTGGAGCTGAAAGAAAGAAGGCGGAGAATAGTTCAAAGTCGCTGGAAACATTGTCGCAAAATCCGAAAGGATTGCAATGGAACGATTACCTTTATTTAGAATAAACTAATAACGAAAGGGACCCCAGCAAGCCTAGAGGAATGTAGATGAAGAGTGATTCGGCCTCCAACATAAAGTTATCCCTCCACTGAACCAAATAGGGCTGTTTATACACAAAGAGTTTAGCCTAGCAACCGGCTGCCACCATGATGATATCCAGGCTGGTCTGGGTGTGCCTGGCACTGATAGGGGCGAGGAGCTGCCACGCCCACAGTCTATTCACCTGTGAACCCATCAAGGTGCATCGCTGCCTGGGGATGCTCTACAACATGACTTTCTTCCCCAACATGATGGAGCACTATGACCAGGACATAGCAGCCAGCAGGATGGAGCCCTTCATGCCGCTGGTCAACCTGCGCTGCTCTCCGGACGTACATCACTTCCTGTGTCAGGCCTTTATCCCAGCATGCACTGAGGACACCAAAGTGATCCGGCCATGTCGCGACCTGTGTGAGAAAGTGAGGTCAGACTGCAGGAAGGACATCAGCACCTTCGGCATCACCTGGCCTCCGGAGCTGCAGTGCGACAGGTTGGAAGATTGCCTCTACTCTCCAGATGGCTCAGTCCTGCCACCAACCAGAGTGACCACACCCAAGACCTCTCTGTCTGCCAAGAGGGACATGGGCTTCTGGTGCCCCCTTCAGCTGAAGACCCGACCCGGCCAGGGATCCACGTTCCTGGGTGCCGGGGACTGCGCTCCCCCTTGCTCCAACATGTACTTCAAGCCCCATGAAATCGAGTTCGCCAAGACCTTCATCGGGGTGTGCTCCATCGTCTGCCTCTGCGCCACGCTCTTCACCTTTCTCACCTTCCTCATCGACGTCAAACGCTTCCGCTACCCCGAACGGCCAATCATCTTCTACGCCGTGTGCTACAGCTTCGTGTCGCTCATCTACTTCATCGGCTTCCTGCTGGGGAACAATGCATCCTGCAACAAGGCGGTGCACCCGGCTGCCATGGACACGGTAGTGCTGGGCTCCCAGAGTAAAGGCTGTACGTTACTCTTCATGCTACTCTACTTCTTCTCCCTGGCCGGCATCGTCTGGTGGGTCATCCTCACCATCACCTGGTTCCTGGCCGCCGGGCCCAAGTGGAGCTGCGAGGCCATCGAGAAGAAGGCGGTGTGGTTCCACTCTGTCGCTTGGGGGATCCCCGGAGCACTAACCGTCATGCTACTGGCTCTCAACAAGGTGGAGGGAGATAATATCAGCGGGGTGTGCTTCGTGGGTCTCTATGATCTGGACGCGCTGCGGTACTTTGTGCTGGCGCCACTGTGTATCGGGGTTGTGGTTGGGCTGTCTCTGCTCCTGGCTGGGATTGTGTCGCTCAACAACGTGCGTCAGGTGATCCAGCACGATGAGAGGAACCAGGAGAAGCTGAAGAAGTTTATGATCCGTATTGGGGTGTTCAGTGGTCTGTACCTGGTGCCCCTGGTCACTCTGCAGGGGTGTTATATCTATGAACAGAGCCAGCGCTCCACCTGGGAAAACACCTGGATCAATGACCGTTGCCAGGAGTACAGCATTCCCTGCTCACACAAGACTACAGAGTCTGGTCGTCCAGACCTGTCCCTATTCCTAATTAAATACCTGATGACCCTGGTGGTTGGGATCTCAGCTGTGTTCTGGGTCAGCAGCAAGAAGACCTGCTCAGAATGGGCCTTCTTCTTCAACAGGACCAGGAAGAAAGACCCCATTAGTGAGAGCCGCAGAGTTCTCCAGGAGTCCTGTGAGTTCTTCCTCAAACACAACAGCCGTGTCCAGCACAAGAAGAACCACTACAACCCCGGCTCCCACAAACTCAAGGTCATCTCCAAGTCCATGGGCACCAGCACTGGTGCCTCAGCCACAGGCAACCACGGCACCTCAGCAGTGGGCAACCATGAGGCCATCCGGGGACAGGCTTCTTTCTCAGAGGCCAGGGGCTCATCTGAGGCCTCCGCCAGGGAGCAGCTGGAGAGGGGCAGCTCCACCCGTGGCTCCaggctgagggagagggagaagcagcCCAGTGGACAGGCCCTgtctggggggagagagggggcagagagacgtAGTAAGAAGGGCAGCTCCAGCAAGGTTAGCAGCCGCTCAGAGAGCTTCCACAGAGTCCCAGAGGGAAGGATGACTCCCCGGAGTGAACTATCAGAGACGAGACAGATGCCCAGTGGACAGCACCTGGCTTTAAGCCACTCCCACAGCGGCAGTGTGAAAGGCTCCGTCCCTCACCTGGTTCGCCAGTTACCAGAGGAGAAAAAGGACAAGGACAGCAGCTGTTGAGCCCAACCAGCAGGCTCCTATGATACTTAACACCAACAAAGATGGGGGACTCTGGTCCTCAGGGGCTGGActgagtgtctgctggtttttgttcTGTTCTTCCTTTCAAATGAGCAACTGATTTAACCTGTCATACCATACCAGATGTGTACACTTGGAACAATCAGTGATATTAGTGGATCGATTCAGTAcctgagggagaatagagagttgAGAAAATCCAAAGGACAGGAGTTTTCCTTCACACCACAGAGACGGGAAGGAAGAGACTAGGTGGGCCACCAAGGTCCTAGAGTTCCCTTCAGTGACCGACCCAACAGGTGTAGCTACTGTACATCAGTCAGCTTGACTGGATCACTGGACACATCAAGGTGAATGAGGTTAGAGAATCATGCAGCTCTTCAGACCAACAGTTGCATTTCCCTGCTGTAAAACAGTCACTTCGGTTGACATATTGTTTATTTACTTATGAAAGCTGTACTTTTCTGAGGGTAGATTGATATGTAAAGTGTGTCGAATATACACTGGCAATATTTATGTAAACTATTTTATTTTCTATCACTGGACTAGTCTTTACACTGAGTTTAAGCGCTTGAAAATCTGAAAATCGTGAAGGTTTCACCAAACAATCAGAACTTCAACAATATCTAGCTGTGGTGGTtaactctttttattttatttttgtattcaaATGGTTAATGTCATGTATATGTAGACAATTCCATCATGAAACAATGAGAAGCAAGCATAGCAGTTCTGTAGTTAAAGTAATTGCAGTAGACAGGAGGTTCTCACTACCAATACAATCAGTATGCTACTCTACTTTTCATTCCTTTTCCATTAGTGTTTTTCAGTATCTCTATAAATAGTTACATAAGCATTTTTCAATTTGCTGACTCTCGTCATTAACTTAATTTCCAGTAAATCTTAGTGGAGCATGTGTTTTTTTTATACTACAGTTTCTAGAAGAATGTGCCTTGTGAACTAAATCATGGTTTTCAGATAACCTACTTTTTGTCTGTCTACCTACAGATGCTTTACATGTGTGACAGTCATTCCATGTGCGTATTCATCTCCAGTGAAATATGTGGACAAAGTAACCAGGCTTATTTCTGGCTCTTGACCTTATGTAAGTTGTTGTGGTTGGACATCTCACTACACTAGAGGAGTTACCACTTAGAGATGAACCCAGTGCAAATACTGAGTGATACTGTACAATTTGTACAGAGATCGAATGTCTTTTTTTGGAGTTTATATTTCTGTTACGCAATTATCGTTAAACCAAATATAGTAGTATGTATACCTAACATAACTGATGATACAATATGAAAACACCAGTAGAAAAAATCAGAGACGAAATCCAATCCAAAGCATGTACCTAGTTGAGttgatatttttttacaaatgtgtGGGTTTTGTTCAGTATTTCAATTGTCATGATTCTTACCGGTAATCCATGAATTGTGTTTGACAGTACACATTTTCCTTGCAAGCATTTTCCCGAAAGGCCTGTTGGGAATAAGTCTTGTACACTGTATTAATACATCCATACATACTCACAATCATTTGATAAGTATTTGAATCCCTCCCATGCTGAATTGTTTTATTGTCTTTAATCTGACCCTGTCCTTGATCTTCATCCATATCTATTGTATATGATTATGTGGCTATCAGAAGACAAAGGTTCCAGCTAAAGGGAATGTGTTATCTTGCTTCCACTCCTTCACAAATGAATAATATAACCACTACTCATCCTTGATTGGTTGACTTGTTTAGGCTAtacattttttgtatatatattttaaattcccTATACATTTTTGTGAACTTTTGTAGTCTTATGTTGTATGTACTATTTGATATATATTTTGTATCAATTATATTTCCTTTTAATAAAAGATTAttgaatcaaataaaa

Function

NR:

description
frizzled-6-like

GO: NA

KEGG:

id description
K02376 FZD6; frizzled 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592719.2 False 4488 mRNA 0.47 8 15830833 15844953
XM_021592714.2 True 4395 mRNA 0.47 8 15830835 15844953

Neighbor

gene id symbol gene type direction distance location
LOC110512192 LOC106578478 coding upstream 29647 15798945 ~ 15801186 (+)
zp3d.1 LOC106605642 coding upstream 35310 15791844 ~ 15795523 (+)
LOC110503805 LOC106605641 coding upstream 42178 15711043 ~ 15788655 (+)
fbl fbrl coding upstream 120596 15706305 ~ 15710237 (+)
zgc:162160 LOC106605640 coding upstream 133436 15672260 ~ 15697397 (+)
LOC110512131 LOC106605648 coding downstream 1267 15846220 ~ 15853237 (+)
LOC110512109 LOC106605649 coding downstream 16666 15861619 ~ 15864453 (+)
LOC110512078 stx12 coding downstream 22302 15867255 ~ 15878522 (+)
LOC110512064 LOC106578487 coding downstream 41072 15886025 ~ 15888715 (+)
bves LOC106578487 coding downstream 44166 15889119 ~ 15898210 (+)
G228223 NA non-coding upstream 5125 15825304 ~ 15825708 (+)
G228034 LOC106578507 non-coding upstream 13693 15815287 ~ 15817140 (+)
G228032 NA non-coding upstream 28978 15801361 ~ 15801855 (+)
G228011 NA non-coding upstream 90152 15740220 ~ 15740681 (+)
G228414 NA non-coding downstream 321070 16166023 ~ 16166365 (+)
G228451 NA non-coding downstream 381953 16226906 ~ 16229345 (+)
G228707 NA non-coding downstream 846591 16691544 ~ 16693504 (+)
G228711 NA non-coding downstream 857699 16702652 ~ 16702864 (+)
G228715 NA non-coding downstream 862206 16707159 ~ 16734495 (+)
G227606 NA other upstream 586551 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 734920 15072005 ~ 15095913 (+)
G227405 NA other upstream 832758 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 839539 14984771 ~ 14991394 (+)
LOC118944532 NA other downstream 668550 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 798398 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 949746 16794699 ~ 16801793 (+)
G230916 NA other downstream 2450401 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 2725056 18569698 ~ 18588248 (+)

Expression


Co-expression Network