LOC110512131 (LOC106605648)


Basic Information

Item Value
gene id LOC110512131
gene name LOC106605648
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15846220 ~ 15853237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970452.1
GTTCCAGACCAATTGACACGCAGTAGGCTCACATTAATATAATTAATATTTGTAAGTGAAATGTTATTTCCCGCCCATGACAACTTCTGAGTAGGTCCAGACATTTAACAAACTTTAGCGGCAAAAACTCATAAATCATATGCTATGCGAGAACACATTTACAGGCAGAGCATAGGCGCGCTCTAAATTTCCCTCATCCCCACTCACTTGAAATACGGCGCAGCACAGCAGCAGGGAATCCTTGCCGTGGTCTCTCTCGATCTTTTGGGAAAATAAAAGATGGTATCAGCTCTAACTCGTCTGCTGCTCCTCACCTGCGTGATTCTACCTTTCAATGGAGCAGAGAAATTGAGAAAGGCACTTGACAGGAAGGATGTTGAATAcgaaaagTGTACTGGAAACGATGCAGACAAACCAAACTGCACCAGAATCTCTGCTGAATCCAATTCAAGAACCTCTTATTTGAACAACATGTACAACAGCTGCCCCCGGGGTCCGGCTGGCACCCCTGGAAGGGAGGGTAACCCTGGCACCAATGGCATCCCTGGGACTCCTGGCATCCCGGGGCGCGATGGCATcaagggggagaaaggagagtgtgtgagtgaggtgTTTGAGGAGCCATGGAAACCCAACTACAAGCAGTGTGCCTGGAACTCACTCAACTATGGGATCGACCTGGGCAAAATAGCTGACTGTACATTCACCAAGCTGCGTTCAGACAGTGCCCTGCGTGTGCTCTTCAGCGGCTCCCTGAGGCTGAAGTGTAAGACAGCCTGCTGCCAGCGTTGGTACTTCACCTTCAACGGAGCTGAGTGTACAGGACCTCTGCCCATCGAATTCATCATCTACCTCGACCAAGGGAGCCCTGAGCTCAACTCCACCATCAACATACACAGAACCTCATCTGTTGAAGGGTTGTGTGAGGGGATCTATGACCTGTGTATTCCTCTTGTCTTGTCCCAGTCTAAGGGTTGTGTGAGGGGATCTATGACCTGTGTATTCCTCTTGTCTTGTCCCAGTCTAAGGGTTGTGTGAGGGGATCTATGACCTGTGTATTCCTCTTGTCTTG
>XM_036970456.1
CGCAGTAGGCTCACATTAATATAATTAATATTTGTAAGTGAAATGTTATTTCCCGCCCATGACAACTTCTGAGTAGGTCCAGACATTTAACAAACTTTAGCGGCAAAAACTCATAAATCATATGCTATGCGAGAACACATTTACAGGCAGAGCATAGGCGCGCTCTAAATTTCCCTCATCCCCACTCACTTGAAATACGGCGCAGCACAGCAGCAGGGAATCCTTGCCGTGGTCTCTCTCGATCTTTTGGGAAAATAAAAGATGGTATCAGCTCTAACTCGTCTGCTGCTCCTCACCTGCGTGATTCTACCTTTCAATGGAGCAGAGAAATTGAGAAAGGCACTTGACAGGAAGGATGTTGAATAcgaaaagTACAACAGCTGCCCCCGGGGTCCGGCTGGCACCCCTGGAAGGGAGGGTAACCCTGGCACCAATGGCATCCCTGGGACTCCTGGCATCCCGGGGCGCGATGGCATcaagggggagaaaggagagtgtgtgagtgaggtgTTTGAGGAGCCATGGAAACCCAACTACAAGCAGTGTGCCTGGAACTCACTCAACTATGGGATCGACCTGGGCAAAATAGCTGACTGTACATTCACCAAGCTGCGTTCAGACAGTGCCCTGCGTGTGCTCTTCAGCGGCTCCCTGAGGCTGAAGTGTAAGACAGCCTGCTGCCAGCGTTGGTACTTCACCTTCAACGGAGCTGAGTGTACAGGACCTCTGCCCATCGAATTCATCATCTACCTCGACCAAGGGAGCCCTGAGCTCAACTCCACCATCAACATACACAGAACCTCATCTGTTGAAGGGTTGTGTGAGGGGATCTATGACCTGTGTATTCCTCTTGTCTTGTCCCAGTCTAAGGGTTGTGTGAGGGGATCTATGACCTGTGTATTCCTCTTGTCTTGTCCCAGTCTAAGGGTTGTGTGAGGGGATCTATGACCTGTGTATTCCTCTTGTCTTG
>XM_021592702.2
AGTAGGCTCACATTAATATAATTAATATTTGTAAGTGAAATGTTATTTCCCGCCCATGACAACTTCTGAGTAGGTCCAGACATTTAACAAACTTTAGCGGCAAAAACTCATAAATCATATGCTATGCGAGAACACATTTACAGGCAGAGCATAGGCGCGCTCTAAATTTCCCTCATCCCCACTCACTTGAAATACGGCGCAGCACAGCAGCAGGGAATCCTTGCCGTGGTCTCTCTCGATCTTTTGGGAAAATAAAAGATGGTATCAGCTCTAACTCGTCTGCTGCTCCTCACCTGCGTGATTCTACCTTTCAATGGAGCAGAGAAATTGAGAAAGGCACTTGACAGGAAGGATGTTGAATAcgaaaagTGTACTGGAAACGATGCAGACAAACCAAACTGCACCAGAATCTCTGCTGAATCCAATTCAAGAACCTCTTATTTGAACAACATGTACAACAGCTGCCCCCGGGGTCCGGCTGGCACCCCTGGAAGGGAGGGTAACCCTGGCACCAATGGCATCCCTGGGACTCCTGGCATCCCGGGGCGCGATGGCATcaagggggagaaaggagagtgtgtgagtgaggtgTTTGAGGAGCCATGGAAACCCAACTACAAGCAGTGTGCCTGGAACTCACTCAACTATGGGATCGACCTGGGCAAAATAGCTGACTGTACATTCACCAAGCTGCGTTCAGACAGTGCCCTGCGTGTGCTCTTCAGCGGCTCCCTGAGGCTGAAGTGTAAGACAGCCTGCTGCCAGCGTTGGTACTTCACCTTCAACGGAGCTGAGTGTACAGGACCTCTGCCCATCGAATTCATCATCTACCTCGACCAAGGGAGCCCTGAGCTCAACTCCACCATCAACATACACAGAACCTCATCTGTTGAAGGGTTGTGTGAGGGGATCCGGGCAGGCCTGGTGGACGTGGCTATCTGGGTGGGGACCTGTGCTGACTACCCCAGAGGAGACGCATCTACAGGGTGGAACTCTGTATCCAGGGTCTTCATAGAGGAGCTGCCCAAATGAGGCCTTCTTTATTAAGTGATGGGACCAGGCCCCATAGAGAAAGAACCCCTAACAATACTTCTGAAGCCTTTGACTACATATCAGTTTAGTTTCTGGATGGGTTCCTAGTCTTTGACAATGTCCTCTGGCCAATCAAACAACTTCAGTTGTGGCTAAATCCTACTACAATATCACTGATGTTCACTTGAATGTTTTGTACTACAGCACCTGGGTAGGGTCTAGTTTATTGGCCACCTGAAATTAGATTTATTCCTCATTAGTCCCATTCCTGTTTAATAAAGGAAAGATTTTGGCTGTGCATGTAATCTGTTGAAGTCGTACATTTTTAAATGAATTACTGTCAATAAAGTAATATTTTGTATGAATCAA
>XM_021592710.2
ATTTGTAAGTGAAATGTTATTTCCCGCCCATGACAACTTCTGAGTAGGTCCAGACATTTAACAAACTTTAGCGGCAAAAACTCATAAATCATATGCTATGCGAGAACACATTTACAGGCAGAGCATAGGCGCGCTCTAAATTTCCCTCATCCCCACTCACTTGAAATACGGCGCAGCACAGCAGCAGGGAATCCTTGCCGTGGTCTCTCTCGATCTTTTGGGAAAATAAAAGATGGTATCAGCTCTAACTCGTCTGCTGCTCCTCACCTGCGTGATTCTACCTTTCAATGGAGCAGAGAAATTGAGAAAGGCACTTGACAGGAAGGATGTTGAATAcgaaaagTACAACAGCTGCCCCCGGGGTCCGGCTGGCACCCCTGGAAGGGAGGGTAACCCTGGCACCAATGGCATCCCTGGGACTCCTGGCATCCCGGGGCGCGATGGCATcaagggggagaaaggagagtgtgtgagtgaggtgTTTGAGGAGCCATGGAAACCCAACTACAAGCAGTGTGCCTGGAACTCACTCAACTATGGGATCGACCTGGGCAAAATAGCTGACTGTACATTCACCAAGCTGCGTTCAGACAGTGCCCTGCGTGTGCTCTTCAGCGGCTCCCTGAGGCTGAAGTGTAAGACAGCCTGCTGCCAGCGTTGGTACTTCACCTTCAACGGAGCTGAGTGTACAGGACCTCTGCCCATCGAATTCATCATCTACCTCGACCAAGGGAGCCCTGAGCTCAACTCCACCATCAACATACACAGAACCTCATCTGTTGAAGGGTTGTGTGAGGGGATCCGGGCAGGCCTGGTGGACGTGGCTATCTGGGTGGGGACCTGTGCTGACTACCCCAGAGGAGACGCATCTACAGGGTGGAACTCTGTATCCAGGGTCTTCATAGAGGAGCTGCCCAAATGAGGCCTTCTTTATTAAGTGATGGGACCAGGCCCCATAGAGAAAGAACCCCTAACAATACTTCTGAAGCCTTTGACTACATATCAGTTTAGTTTCTGGATGGGTTCCTAGTCTTTGACAATGTCCTCTGGCCAATCAAACAACTTCAGTTGTGGCTAAATCCTACTACAATATCACTGATGTTCACTTGAATGTTTTGTACTACAGCACCTGGGTAGGGTCTAGTTTATTGGCCACCTGAAATTAGATTTATTCCTCATTAGTCCCATTCCTGTTTAATAAAGGAAAGATTTTGGCTGTGCATGTAATCTGTTGAAGTCGTACATTTTTAAATGAATTACTGTCAATAAAGTAATATTTTGTATGAATCAA

Function

NR:

description
collagen triple helix repeat-containing protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970452.1 False 1072 mRNA 0.49 5 15846220 15852719
XM_036970456.1 False 970 mRNA 0.50 4 15846238 15852719
XM_021592702.2 False 1401 mRNA 0.47 5 15846241 15853237
XM_021592710.2 True 1291 mRNA 0.48 4 15846267 15853237

Neighbor

gene id symbol gene type direction distance location
LOC110512168 LOC106578482 coding upstream 1267 15830833 ~ 15844953 (+)
LOC110512192 LOC106578478 coding upstream 45034 15798945 ~ 15801186 (+)
zp3d.1 LOC106605642 coding upstream 50697 15791844 ~ 15795523 (+)
LOC110503805 LOC106605641 coding upstream 57565 15711043 ~ 15788655 (+)
fbl fbrl coding upstream 135983 15706305 ~ 15710237 (+)
LOC110512109 LOC106605649 coding downstream 8382 15861619 ~ 15864453 (+)
LOC110512078 stx12 coding downstream 14018 15867255 ~ 15878522 (+)
LOC110512064 LOC106578487 coding downstream 32788 15886025 ~ 15888715 (+)
bves LOC106578487 coding downstream 35882 15889119 ~ 15898210 (+)
hace1 hace1 coding downstream 86212 15939449 ~ 15973343 (+)
G228223 NA non-coding upstream 20512 15825304 ~ 15825708 (+)
G228034 LOC106578507 non-coding upstream 29080 15815287 ~ 15817140 (+)
G228032 NA non-coding upstream 44365 15801361 ~ 15801855 (+)
G228011 NA non-coding upstream 105539 15740220 ~ 15740681 (+)
G228414 NA non-coding downstream 312786 16166023 ~ 16166365 (+)
G228451 NA non-coding downstream 373669 16226906 ~ 16229345 (+)
G228707 NA non-coding downstream 838307 16691544 ~ 16693504 (+)
G228711 NA non-coding downstream 849415 16702652 ~ 16702864 (+)
G228715 NA non-coding downstream 853922 16707159 ~ 16734495 (+)
zgc:162160 LOC106605640 other upstream 149576 15672260 ~ 15697397 (+)
G227606 NA other upstream 601938 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 750307 15072005 ~ 15095913 (+)
G227405 NA other upstream 848145 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 854926 14984771 ~ 14991394 (+)
LOC118944532 NA other downstream 660266 16477925 ~ 16515897 (+)
LOC110503770 LOC106605493 other downstream 790114 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 941462 16794699 ~ 16801793 (+)
G230916 NA other downstream 2442117 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 2716772 18569698 ~ 18588248 (+)

Expression


Co-expression Network