LOC110512064 (LOC106578487)


Basic Information

Item Value
gene id LOC110512064
gene name LOC106578487
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15886025 ~ 15888715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592665.2
CTGGTCTGAAAACAGAGAGATCAAGGAGTGGGaaagacacacagatacagacacacacacatacacaacctctCATTAAAGTTGAGCTTTTTTATCCACCCTACTCACCTTTACACCTATAACAAGTAGTGGAAGTGTTACAGCCCTACTGAGTTGTTGGAGACCACCTTCTGTCAGAGACCTTGGAGGCTTGTCATTCATCATCACAATCTTCTCTTGATCAGGCAAATTCATAACCCCATCATCACAGTATATGTTTAGTGAGTTTGAGAATTATCTGAGATTTGCATTGAAAGGTAAACATGTTAGGCCTACTTGGTGTTGTTGTGTAATGTCATTTGCTCAGGCTGTAATTTGTTGAATGAGTAATTTGATATCCATACATCTTATATCTCAATATCGCATTTCAATTATTGGATATATCCTAGACGTCATGTGCATAGAAGATATGGTTTGGTTGAGCCCGATAGAGCTTTAATCAGTTGGATGTCAGGACCAAGCGGAGCAGTAGGCTCCTTAGCCACCCCCGTCCCGATACCCGGGTCATATTTTAAGAGGTGATATCATCAAAACTTAGGGCGATTAAATGTTAGGGTGGAAGTCTCCGTGACGTTCCACTTATTAGTTTTCTCTTACCACCTCTCTGTTTTCGAAAAAGTGACGTGCTCCCCACGCGCGACAATGGAGGTGCCAGAATTTTTCCCACCTCCTGAAAACTTAACGGCGGCTGTCGTGCACCCATTATGCGAAGAATGGAAGGGGGGATCCGAGGTTGCCATCTTCCACCTCGCCAGTATCTTCCTCGTTTTGGGGTTCATGGGAGGGAGCGGGTTCTATGGGCTCCTCTACTTGTTTACCTTTCTGACGCTCGGTTTCTTCTGCACAACCATTTGGTCATGGTCGGACGCGTGCACCACCGACACCTTTTTGTGGAATTTCGCTCTCTTTGGGGTATGTGCAGTTCAAGTGGTGCTTGTCGCCTACCGACTGAGGAACGTTACTTTCGAAAAGGAGTTTCAAGATCTGTACAGCTACCTGTTCAAAAAGCTGGGGGTGTCGCTCACCCACTTCGGCAAGATAGTCGCCTGTTGTGAAGGGGACATCCACACTATAGAGAAAGACCACTGTTTTGCTATGGAGGGCAAGACTGCAATTGATAAGCTGTCCGTTCTTCTGTCCGGCAGaattcGTGTGACAGTAAATGGAGAGTTTTTACATGACATATATCCTTTCCAGTTTCTCGATTCACCTGAATGGGACTCTCTCCGGCCATCAGAGGAGGGACTTTTCCAGGTGACCCTGCGTGCAGATAATTGCTGTAGGTACGTTTCTTGGAGACGTAAGAAACTGTACCTACTCTTCGCCAAACACCGCTACATCGCCAAGGTCTTTGCGCTCGTGGTGCGGAATGACATCGCGGACAAGCTGTACTCCCTCAACGACAAGGCGTTCGACAGCCGCGGGTTCCGATATGATCTCCGGTTACCCACCTACTCTCACGTGCCCCCGTTGCCTGAATTAGACCGGACAGATGCGTTCCTACGAGTCCCAGCGCAATATGACCATGGACACCGTGCCCGTGTCCCTATAACTATAACAGCACCGAAAGAGACTGTCTCGTGACTGGAACGGAACTCTTTAATGTTTGTTTTTCATTAATGGATGTTGTTTTTGTCTGTTTGTTATCCTCAAGTGCTTAGGCTATAGATAGGGCATAAGCTATGTAATTTACGCATCAACATAGAATACATTGTAGCACATCAAGTAACCCTCCACTTGGTTTTCCATACATAATGCAATaggcgcgcgcgcgtgtgtgtatgtgtgtgtgtgtgtgtgagtgtgagagagagattttctCTGCATCAAAATACCAGCGAAATGTTACCCCTGATTTCTGCTTATGTTTTATAGTGCACTTTACTATCTGTCTGTCTTAAATTGAGACTGTATATTCAATTTCCTTACTGAGTTTTTTTGGTCGATAGTTGTGTTTAATCGTAATAAATTATCAACAATG

Function

NR:

description
popeye domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592665.2 True 2020 mRNA 0.45 3 15886025 15888715

Neighbor

gene id symbol gene type direction distance location
LOC110512078 stx12 coding upstream 7503 15867255 ~ 15878522 (+)
LOC110512109 LOC106605649 coding upstream 21572 15861619 ~ 15864453 (+)
LOC110512131 LOC106605648 coding upstream 32788 15846220 ~ 15853237 (+)
LOC110512168 LOC106578482 coding upstream 41072 15830833 ~ 15844953 (+)
LOC110512192 LOC106578478 coding upstream 84839 15798945 ~ 15801186 (+)
bves LOC106578487 coding downstream 404 15889119 ~ 15898210 (+)
hace1 hace1 coding downstream 50734 15939449 ~ 15973343 (+)
LOC118946091 LOC106605491 coding downstream 569004 16457719 ~ 16476369 (+)
LOC118944532 NA coding downstream 589210 16477925 ~ 16515897 (+)
LOC118946105 LOC106605491 coding downstream 662720 16551435 ~ 16575223 (+)
G228223 NA non-coding upstream 60317 15825304 ~ 15825708 (+)
G228034 LOC106578507 non-coding upstream 68885 15815287 ~ 15817140 (+)
G228032 NA non-coding upstream 84170 15801361 ~ 15801855 (+)
G228011 NA non-coding upstream 145344 15740220 ~ 15740681 (+)
LOC110503805 LOC106605641 non-coding upstream 173906 15711043 ~ 15788655 (+)
G228414 NA non-coding downstream 277308 16166023 ~ 16166365 (+)
G228451 NA non-coding downstream 338191 16226906 ~ 16229345 (+)
G228707 NA non-coding downstream 802829 16691544 ~ 16693504 (+)
G228711 NA non-coding downstream 813937 16702652 ~ 16702864 (+)
G228715 NA non-coding downstream 818444 16707159 ~ 16734495 (+)
zgc:162160 LOC106605640 other upstream 189381 15672260 ~ 15697397 (+)
G227606 NA other upstream 641743 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 790112 15072005 ~ 15095913 (+)
G227405 NA other upstream 887950 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 894731 14984771 ~ 14991394 (+)
LOC110503770 LOC106605493 other downstream 754636 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 905984 16794699 ~ 16801793 (+)
G230916 NA other downstream 2406639 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 2681294 18569698 ~ 18588248 (+)

Expression


Co-expression Network