bves (LOC106578487)


Basic Information

Item Value
gene id bves
gene name LOC106578487
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15889119 ~ 15898210 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592653.2
CCCTCGCCTTGCCCATTTTAGTCAATGCCTGTCAGTTCACTGGAATGCGCGACTCACATTGTGCAGTCCCCCAGCTCGCGAGGACATACATTTATAGCTCCTCATTACGTGTCCATTGTTTTCAATTCATTATCCTCTCCAGCGACGCCTTTGATCGATTGTTGTCAGATTGgTGAGGATCAGGATGTCTTCCTCTCCGGAGATGACCAGTAGCCTGTTCTACACCACCCTGGCCCCCCTGCGGTCGGCAGTCCCTGGGTCTGTACCCGGGGCTGGAGGTGGAGGTCTGGTGATGACCACCATGGAGCCCAACATAACCTCCTGTGAGGAGTGGGAGGAGGCCCACCACCTGCTCTTCCACCTGGggaacctgtctctcctcctgggCCTGGTCATCCCCACCACCCTGACCCTGCACATGATCCTGCTGCGCCTCATGCTGATGACAGGAAGCTGTCTGTTCATCACCTGGGCAACGCTGTACCGGTGTAACCTAGATGTCATGGTGTGGAACGTGGTCTTCCTGCTGGTCAACTTCATGCACTTCTTCTACCTGGTCTACAAACGCAGACCTATTAAGATTGACAGGGAGCTGAAGTCAGTGTACAAGCGGATGTTTGAGCCCCTTCACGTGCGCGAGGCCCTGTTCCAGAGACTGACGGGCCAATTCTGCACCATCCAGAGCCTGAAGAAGGGACAGGTGTATGCTGCCGAGGACAAGACCTCCGTGGATGAGCGCCTCAGTATCCTCCTTAAAGGAAAAATGAAGGTGTCATATCGAGGTCATTTCCTCCATAACATCTACACGAACGCCTTCATTGACTCCCCTGAGTTCAGATCAACCCagatgaacagaggagaaaaaTTCCAGGTGACCATCATGGCGGAGGAGAATTGTAAATTCCTGTGTTGGTCCAGAGAGAGGCTCACCTACTTCCTGGAGTCGGACTCCTTCCTGAACGAGGTGTTCAGGTACCTCATTGGCAAAGACATCACCAACAAGCTGTACTCGCTCAACGACCCCACTCTCAGTGACAAGGCAGCGAAGAAGATGGAGCGTCAGCCCAGCCTGTGTTCCCAGGTCTCTATGATGCAGATGAGGAACAGCATGGGCAGCACCAGTGACACCGATGACATCCTGAACCAGATCCACCGTGGAGGCTCCAGTGGCTCTTCACATCAAAAATCTCCTGCCTCCAAGACATCCAAAACGATGAAGCCCATTGAAGAAAAAATAGAAGACGACGTCTTTATAGAGTCTGAGCCAGACTCTCCTGTTAAGAAACGCCACACCCCCACGACAGCCATAGAGGAGGTGTAAGGAGATGTGATATTATCCTGCAACAACACCACTGATCACCCACCTATCCTGTAATCTGATACAGACCCTGGTTAGTTATGGTAGAATAACTTACAACAATAGCTTGAAAAAGGCTTTTACATGATCAAAATATCTATCTACATATAGCTGGAAAACAGAACTGTAGATTTTGGCATCTCACGTTGTCTTGTAGTGTTTGGTATTATTGTGAGTTTGTAGCTGTTGTACTTTTTAAATCCTGTTTGATTGGATGTTGTACAATGCCTTTGCTTAGCTCTTATTCTCAGTGAGTGTTCCAAAAGTATTACGTGTCACAACCACAACATTTTAGTGTAAGCACAACCTCTGAGGAAGGTTTCTGTTAAACCTTTTACTCATTGTGTGTCATATTGTGTGATTAATTATCTTATTTATGCACTGAGCTTCTGCAGTGTTGTGCTTTGATgaatgcacatttaacatgttaaaCCTCCTGGTCAATGCTAACCATTTGAGGCTGTTGTGCTGTTTTTTTCCAGTGTACAAGTTTGGGATCACTTTTTTTATGCCATGATAGTTACCTTATATTAATTACTCAGAGGGAACACTTGAAAAAGAAATCAACAGAAATGATGGATAGCTCGTAGACCTCTGCTTTTTATCCTATAGCGCCCTCTAGGAGCTATCATGAGTACTACCGGTTTATTTTCTTAGTCTGAACTACTGTCACTGTTTAAACCAGGTCAATGTTCAAACACATTCCATGGAGggcatgttttgttttttcttcCAATTAAGACCCAGACAACCAagtgaggggagttctttactaattagtgaccttaattcatcaatcaagtacgaGGAGCCAAACAGAAactcggccctctgtggaatgagtcaCATCCCTGAAAGATCAACCAGACCAAAAGAAGAGGTTAGCAACAGGCTTTATTATTTCAGTCAAATAAACCTTTTGAATATCTCCGACAAACCATGATTGATGTAACAAAAAAAATGGCTTTGAATACAATGAATGAATTGAATATAATTCATTCATTCAGGCCAACAGGAAAACAATAAAACAGATATCAGTGCTCTTTTGA
>XM_021592659.2
CCCTCGCCTTGCCCATTTTAGTCAATGCCTGTCAGTTCACTGGAATGCGCGACTCACATTGTGCAGTCCCCCAGCTCGCGAGGACATACATTTATAGCTCCTCATTACGTGTCCATTGTTTTCAATTCATTATCCTCTCCAGCGACGCCTTTGATCGATTGTTGTCAGATTGgTGAGGATCAGGATGTCTTCCTCTCCGGAGATGACCAGTAGCCTGTTCTACACCACCCTGGCCCCCCTGCGGTCGGCAGTCCCTGGGTCTGTACCCGGGGCTGGAGGTGGAGGTCTGGTGATGACCACCATGGAGCCCAACATAACCTCCTGTGAGGAGTGGGAGGAGGCCCACCACCTGCTCTTCCACCTGGggaacctgtctctcctcctgggCCTGGTCATCCCCACCACCCTGACCCTGCACATGATCCTGCTGCGCCTCATGCTGATGACAGGAAGCTGTCTGTTCATCACCTGGGCAACGCTGTACCGGTGTAACCTAGATGTCATGGTGTGGAACGTGGTCTTCCTGCTGGTCAACTTCATGCACTTCTTCTACCTGGTCTACAAACGCAGACCTATTAAGATTGACAGGGAGCTGAAGTCAGTGTACAAGCGGATGTTTGAGCCCCTTCACGTGCGCGAGGCCCTGTTCCAGAGACTGACGGGCCAATTCTGCACCATCCAGAGCCTGAAGAAGGGACAGGTGTATGCTGCCGAGGACAAGACCTCCGTGGATGAGCGCCTCAGTATCCTCCTTAAAGGAAAAATGAAGGTGTCATATCGAGGTCATTTCCTCCATAACATCTACACGAACGCCTTCATTGACTCCCCTGAGTTCAGATCAACCCagatgaacagaggagaaaaaTTCCAGGTGACCATCATGGCGGAGGAGAATTGTAAATTCCTGTGTTGGTCCAGAGAGAGGCTCACCTACTTCCTGGAGTCGGACTCCTTCCTGAACGAGGTGTTCAGGTACCTCATTGGCAAAGACATCACCAACAAGCTGTACTCGCTCAACGACCCCACTCTCAGTGACAAGGCAGCGAAGAAGATGGAGCGTCAGCCCAGCCTGTGTTCCCAGGTCTCTATGATGCAGATGAGGAACAGCATGGGCAGCACCAGTGACACCGATGACATCCTGAACCAGATCCACCGTGGAGGCTCCAGTGGCTCTTCACATCctgtGAATCAACCCACTCTCTCAGATCACACCTTGCCCTGAAGGGGGTAAAAATCTCCTGCCTCCAAGACATCCAAAACGATGAAGCCCATTGAAGAAAAAATAGAAGACGACGTCTTTATAGAGTCTGAGCCAGACTCTCCTGTTAAGAAACGCCACACCCCCACGACAGCCATAGAGGAGGTGTAAGGAGATGTGATATTATCCTGCAACAACACCACTGATCACCCACCTATCCTGTAATCTGATACAGACCCTGGTTAGTTATGGTAGAATAACTTACAACAATAGCTTGAAAAAGGCTTTTACATGATCAAAATATCTATCTACATATAGCTGGAAAACAGAACTGTAGATTTTGGCATCTCACGTTGTCTTGTAGTGTTTGGTATTATTGTGAGTTTGTAGCTGTTGTACTTTTTAAATCCTGTTTGATTGGATGTTGTACAATGCCTTTGCTTAGCTCTTATTCTCAGTGAGTGTTCCAAAAGTATTACGTGTCACAACCACAACATTTTAGTGTAAGCACAACCTCTGAGGAAGGTTTCTGTTAAACCTTTTACTCATTGTGTGTCATATTGTGTGATTAATTATCTTATTTATGCACTGAGCTTCTGCAGTGTTGTGCTTTGATgaatgcacatttaacatgttaaaCCTCCTGGTCAATGCTAACCATTTGAGGCTGTTGTGCTGTTTTTTTCCAGTGTACAAGTTTGGGATCACTTTTTTTATGCCATGATAGTTACCTTATATTAATTACTCAGAGGGAACACTTGAAAAAGAAATCAACAGAAATGATGGATAGCTCGTAGACCTCTGCTTTTTATCCTATAGCGCCCTCTAGGAGCTATCATGAGTACTACCGGTTTATTTTCTTAGTCTGAACTACTGTCACTGTTTAAACCAGGTCAATGTTCAAACACATTCCATGGAGggcatgttttgttttttcttcCAATTAAGACCCAGACAACCAagtgaggggagttctttactaattagtgaccttaattcatcaatcaagtacgaGGAGCCAAACAGAAactcggccctctgtggaatgagtcaCATCCCTGAAAGATCAACCAGACCAAAAGAAGAGGTTAGCAACAGGCTTTATTATTTCAGTCAAATAAACCTTTTGAATATCTCCGACAAACCATGATTGATGTAACAAAAAAAATGGCTTTGAATACAATGAATGAATTGAATATAATTCATTCATTCAGGCCAACAGGAAAACAATAAAACAGATATCAGTGCTCTTTTGA

Function

NR:

description
blood vessel epicardial substance-like isoform X1

GO:

id name namespace
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0061436 establishment of skin barrier biological_process
GO:0070830 bicellular tight junction assembly biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0090136 epithelial cell-cell adhesion biological_process
GO:0040017 positive regulation of locomotion biological_process
GO:0001921 positive regulation of receptor recycling biological_process
GO:0008360 regulation of cell shape biological_process
GO:0090504 epiboly biological_process
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016328 lateral plasma membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K21108 BVES; blood vessel epicardial substance

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592653.2 False 2406 mRNA 0.46 8 15889119 15898210
XM_021592659.2 True 2454 mRNA 0.46 9 15889119 15898210

Neighbor

gene id symbol gene type direction distance location
LOC110512064 LOC106578487 coding upstream 404 15886025 ~ 15888715 (+)
LOC110512078 stx12 coding upstream 10597 15867255 ~ 15878522 (+)
LOC110512109 LOC106605649 coding upstream 24666 15861619 ~ 15864453 (+)
LOC110512131 LOC106605648 coding upstream 35882 15846220 ~ 15853237 (+)
LOC110512168 LOC106578482 coding upstream 44166 15830833 ~ 15844953 (+)
hace1 hace1 coding downstream 41239 15939449 ~ 15973343 (+)
LOC118946091 LOC106605491 coding downstream 559509 16457719 ~ 16476369 (+)
LOC118944532 NA coding downstream 579715 16477925 ~ 16515897 (+)
LOC118946105 LOC106605491 coding downstream 653225 16551435 ~ 16575223 (+)
LOC118936471 NA coding downstream 693944 16592154 ~ 16598002 (+)
G228223 NA non-coding upstream 63411 15825304 ~ 15825708 (+)
G228034 LOC106578507 non-coding upstream 71979 15815287 ~ 15817140 (+)
G228032 NA non-coding upstream 87264 15801361 ~ 15801855 (+)
G228011 NA non-coding upstream 148438 15740220 ~ 15740681 (+)
LOC110503805 LOC106605641 non-coding upstream 177000 15711043 ~ 15788655 (+)
G228414 NA non-coding downstream 267813 16166023 ~ 16166365 (+)
G228451 NA non-coding downstream 328696 16226906 ~ 16229345 (+)
G228707 NA non-coding downstream 793334 16691544 ~ 16693504 (+)
G228711 NA non-coding downstream 804442 16702652 ~ 16702864 (+)
G228715 NA non-coding downstream 808949 16707159 ~ 16734495 (+)
zgc:162160 LOC106605640 other upstream 192475 15672260 ~ 15697397 (+)
G227606 NA other upstream 644837 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 793206 15072005 ~ 15095913 (+)
G227405 NA other upstream 891044 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 897825 14984771 ~ 14991394 (+)
LOC110503770 LOC106605493 other downstream 745141 16619192 ~ 16674738 (+)
LOC100653482 mrap2 other downstream 896489 16794699 ~ 16801793 (+)
G230916 NA other downstream 2397144 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 2671799 18569698 ~ 18588248 (+)

Expression


Co-expression Network