LOC118946091 (LOC106605491)


Basic Information

Item Value
gene id LOC118946091
gene name LOC106605491
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16457719 ~ 16476369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970561.1
AGGCCTGCAAGTATTTATACGCGTACTACAATACCCACTACTCCACCTTTGACAGAACATCTGACGTAAACGCTTCTGACAGTGTAGAAACGTGTGTATTAAGTCCTTTCTGTCGTTGCGAGTACAGATCAGAGAAAAGACTGTGTTTGGTAGCATCTTATGGACCACAGAGTGGTAGGCAACCAATGTCTCCGCCCCGGTTCACCAGCGGCCTGCGCTCCTTCTCTACTGTCAGCAAGCAGGAAGACTTCTCTGAAGAAGTATATGATCTGAAGACCAAGCGTCTGAAGAGGCAGGAGCTGTTCTCCAGAGAGGGCCTGACATGGCAGAAGATAGTCCAGTTCTTCACTCAGCACCTGGAGAAGGCAGAGCAGCAGGCtgcagcacaggagctgaagagCATCCTAAAGGCTGCCAAGCAGATAGGTGGCGGAGTTTGTTTGTTCCCAGAGCTCCTGTCGCTCCCCTCAGCGTGGCTCGGCCTTCGGACGCAACATCACCTTCTCCTATGACTGTTACACCCTGGACCCCCAGGAGGCCCTGCCCTGGGCGGGGGGCCCTGAGGACGAGACCCCTGGTGGAGGCCTGGACTTCCAAAGCTTCCTCAACAACCATCAAGGCCTCTGGGGTAATGGGGGAGAGGCGGATGGAGGCAGGCTAAGCCCGGGAGGGGCTCAGAGCTCTGGGGATGGGACCAAACCTGAGGGGGAGGTTGAGAAGTTCCTGAACGGAGGCAACATGATCTCCTCCAGCCCTGAGGAACTGTGCACCTCCCTGTTTGAGATGCTGGCCTCCACCAAGAGTGACGACGAGCTGCAGAACGAGctatTTGAGCTGCTGGGCCCAGAGGGATTTGGGATGATCTCTGTTCTCCCCCAGCGAAGGTCTTCCATCATGAATTCTCTCCTTTCGATCCCTGCAGACAGGATCAACTACCCACCAGGTGAGTCAGACCCCACCCCCTGCACCAGAGGCATCCAGGTCATCTCCATAGAAACTAGAGATCCACCACACTCTCTGAGAGCAGCGGGGTAGAGCATTGTTGAGAAATTAAACTGTAGATAATTGGTTTGAAATTCAAAGTCTACCTACCTAGACAAATCTACTGACTCCAACATTCATCATTGAAAAAAAATTAAACGATGAAATAAATAACTATTTTGCCTGTCACTACCCCTCATTTGGAGGACAGCTTTTAATATTAGGCCTTTTTAATTTAGATGTTCAATACTTATTTACCCACAACCTTCATCAAAGTCAGGGTTTTCAAGGGAAGGAGAAGGTGTGGTCTGAagtataggaggaggagag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970561.1 True 1311 mRNA 0.51 5 16457719 16476369

Neighbor

gene id symbol gene type direction distance location
hace1 hace1 coding upstream 484376 15939449 ~ 15973343 (+)
bves LOC106578487 coding upstream 559509 15889119 ~ 15898210 (+)
LOC110512064 LOC106578487 coding upstream 569004 15886025 ~ 15888715 (+)
LOC110512078 stx12 coding upstream 579197 15867255 ~ 15878522 (+)
LOC110512109 LOC106605649 coding upstream 593266 15861619 ~ 15864453 (+)
LOC118944532 NA coding downstream 1556 16477925 ~ 16515897 (+)
LOC118946105 LOC106605491 coding downstream 75066 16551435 ~ 16575223 (+)
LOC118936471 NA coding downstream 115785 16592154 ~ 16598002 (+)
LOC110503770 LOC106605493 coding downstream 142823 16619192 ~ 16674738 (+)
sim1a LOC106579462 coding downstream 202524 16678893 ~ 16700834 (+)
G228451 NA non-coding upstream 228374 16226906 ~ 16229345 (+)
G228414 NA non-coding upstream 291354 16166023 ~ 16166365 (+)
G228223 NA non-coding upstream 632011 15825304 ~ 15825708 (+)
G228034 LOC106578507 non-coding upstream 640579 15815287 ~ 15817140 (+)
G228032 NA non-coding upstream 655864 15801361 ~ 15801855 (+)
G228707 NA non-coding downstream 215175 16691544 ~ 16693504 (+)
G228711 NA non-coding downstream 226283 16702652 ~ 16702864 (+)
G228715 NA non-coding downstream 230790 16707159 ~ 16734495 (+)
G228722 NA non-coding downstream 234541 16710910 ~ 16711817 (+)
G228752 NA non-coding downstream 285752 16762121 ~ 16762351 (+)
zgc:162160 LOC106605640 other upstream 761075 15672260 ~ 15697397 (+)
G227606 NA other upstream 1213437 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 1361806 15072005 ~ 15095913 (+)
G227405 NA other upstream 1459644 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 1466425 14984771 ~ 14991394 (+)
LOC100653482 mrap2 other downstream 318330 16794699 ~ 16801793 (+)
G230916 NA other downstream 1818985 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 2093640 18569698 ~ 18588248 (+)

Expression


Co-expression Network