LOC118944532


Basic Information

Item Value
gene id LOC118944532
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16477925 ~ 16515897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964386.1
atggatctgggaccagATGTTAGCCGTAAAGGAGGCGGAGTAGAGGGGAGCAGCAAGCCCACCTACGGCTGTCAGGTGACCATCCAAGAGCAGGCCCTGCTGACAGCACGGTGGTCTCCAGTGCTGAGCAGAGAGAGGGTGTACAAACGCGTCCGCTACCCCAACGTCTATGACTGCTACGCCGAGGCCACCAAGACCTCCGCCTTCGTAGGGGGAGCCAAGCTGATGTTACCcgaggggataaagagagagaataataaGATGTATGAAGAGGTGGAGATTCCTCCTAGTGATCCCATGTCCATCGGCTTTGAGGAGAAACCCATCTACATGTGA
>TU261485
TGGTATAGGTGGTATACAATAGGCGGTGGCAAATTgtgtattacagtactgtacatgctGTTCCAAACTTAGTTACCATATTATAAGTGCTCAATTACACAATACAACATTGTAGCCTAGCTCAAAGAAACATTGAATGTATCAGTGATGACCCAACTGTCGGTTTGTAATATTTTACTGATGTCTCTGTTATTCTTGTGTTTAGATGTTAGCCGTAAAGGAGGCGGAGTAGAGGGGAGCAGCAAGCCCACCTACGGCTGTCAGGTGACCATCCAGtcggggaaggagaaagagatgaggaagagggagagagacgctGGGATGACACCGAATCCTCTTCCGACCTCTACTTTGACCCCAAGGAGATGAGAGCTCAGAGAGAGCAGGCCCTGCTGACAGCACGGTGGTCTCCAGTGCTGAGCAGAGAGAGGGTGTACAAACGCGTCCGCTACCCCAACGTCTATGACTGCTACGCCGAGGCCACCAAGACCTCCGCCTTCGTAGGGGGAGCCAAGCTGATGTTACCcgaggggataaagagagagaataataaGATGTATGAAGAGGTGGAGATTCCTCCTAGTGATCCCATGTCCATCGGCTTTGAGGAGAAACCCATCTACAT

Function

NR:

description
PREDICTED: activating signal cointegrator 1 complex subunit 3-like

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964386.1 False 336 mRNA 0.55 4 16477925 16515897
TU261485 True 625 TUCP 0.49 3 16513503 16515893

Neighbor

gene id symbol gene type direction distance location
LOC118946091 LOC106605491 coding upstream 1556 16457719 ~ 16476369 (+)
hace1 hace1 coding upstream 504582 15939449 ~ 15973343 (+)
bves LOC106578487 coding upstream 579715 15889119 ~ 15898210 (+)
LOC110512064 LOC106578487 coding upstream 589210 15886025 ~ 15888715 (+)
LOC110512078 stx12 coding upstream 599403 15867255 ~ 15878522 (+)
LOC118946105 LOC106605491 coding downstream 35538 16551435 ~ 16575223 (+)
LOC118936471 NA coding downstream 76257 16592154 ~ 16598002 (+)
LOC110503770 LOC106605493 coding downstream 103295 16619192 ~ 16674738 (+)
sim1a LOC106579462 coding downstream 162996 16678893 ~ 16700834 (+)
LOC110511998 LOC106579451 coding downstream 244604 16760501 ~ 16787229 (+)
G228451 NA non-coding upstream 248580 16226906 ~ 16229345 (+)
G228414 NA non-coding upstream 311560 16166023 ~ 16166365 (+)
G228223 NA non-coding upstream 652217 15825304 ~ 15825708 (+)
G228034 LOC106578507 non-coding upstream 660785 15815287 ~ 15817140 (+)
G228032 NA non-coding upstream 676070 15801361 ~ 15801855 (+)
G228707 NA non-coding downstream 175647 16691544 ~ 16693504 (+)
G228711 NA non-coding downstream 186755 16702652 ~ 16702864 (+)
G228715 NA non-coding downstream 191262 16707159 ~ 16734495 (+)
G228722 NA non-coding downstream 195013 16710910 ~ 16711817 (+)
G228752 NA non-coding downstream 246224 16762121 ~ 16762351 (+)
zgc:162160 LOC106605640 other upstream 781281 15672260 ~ 15697397 (+)
G227606 NA other upstream 1233643 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 1382012 15072005 ~ 15095913 (+)
G227405 NA other upstream 1479850 14997159 ~ 14998075 (+)
LOC110510950 LOC106605624 other upstream 1486631 14984771 ~ 14991394 (+)
LOC100653482 mrap2 other downstream 278802 16794699 ~ 16801793 (+)
G230916 NA other downstream 1779457 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 2054112 18569698 ~ 18588248 (+)
G231438 NA other downstream 2335352 18851249 ~ 18851982 (+)

Expression


Co-expression Network