LOC110503770 (LOC106605493)


Basic Information

Item Value
gene id LOC110503770
gene name LOC106605493
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16619192 ~ 16674738 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503770
CCCCAGTTCGACAAGTACGGCGAGGGCACCATCATCATGGCACATGACAAGCTGAGCCACTACCTCACCCTGCTCACCCAGCAGAACCCCATAGAGAGCCAGTTCCTAGAGACCATGGCTGACAACCTCAACGCTGAGctgtttgaagctggtggaccaaaacgATATTTCACGGCGACCTGTGTTTGACAGCAGATGCCACTGGCCCCCTTCAATCATGTTCTCTTCTCATCTCCAACCAATACCCTTTTCACGAAATGAACACAGTACAgtgTCACTAGGGACTGTGACTAACGTGGAGGAAGCAGTGAGGTGGATGAGTTACCTGTACATCTGCATGAGAGCCAACCCTCTGGCCTACGGGATCAACCACAAGGcctaccagatGGACCCAGGTCTGGAGCTGTATCGTAAGGAACTGGTGGTGATGGCAGCCAGGAAACTGGACAAGGCCGGGATGATCCGTTTCGAGGAGAGGACAGGATACTTCACTTCCACTGACCTGGGCAGAACCAACCGGGCACTTCTATATCAAATACAACACCATGGAGaCGTTCAACGAGCTGTTCAACTCCCAGAAGACAGAGGCTGACATCCTCAGCATCGTCTCCAAGACGAGGAGTTTGAACAGGTCAAGgTGCGTGATGAGGAGATGGAGGAACTAGAACAGATGCTGTGTAACTACTGTGAGCTGCCTGCTGCAGGCGGAGTGGAGAACGGATACGGCAAGATCAGCATCCTACTGCAGACCTACATCGGCCGGAGAGGTGGACAGCTTCTCCCTCATCTCAGACCTGTCCTACGTAGCACAGAACGCAGCTCGTATCGTCAGGGCTCTGTTTGAGATTGCTCTGAGGAAACGCTGGCCTGCCATGACCTACCGCCTGCTCAACCTGTGTAAAGTGATAGACAAGTGTCTGTGGGGCTTCACTCACCCCCTGAGACAGTTCTCCATCCTGCCTCACAACGTGCTGGCCCGTCTGGAGGAGAAGAAACTGTGGACAAACTGAAAGATATGCAGAAGGACGAGATAGgTCACATGCTCCACCATGTGAACATCGGGTTGAAGGTGAAGCAGTGTGTCCACCCTTCCATACTGATGGAGGCCACCATCCAACCAATCACACGCACCGTGTTCAGGATCCGCCTCCAGATCACCCCCGACTTCCAGTGGCACGACCAGtGTCATGGTTCAGTGGGAGAGGTCTGGTGGCTGTGGGTGGAGGACCCCATCATCTACCATTCAGAGTATCTGCTCCTACAGAAGAAATAGGTGGtggATATGGTTGAGCCTAGTCTTTCTTACCTTGTGTGTGTTTTCCCCACAGACGCTGTGTCAGACCGCTGGCTGGGCTCAGAGGCTGTCTGCATTATCAACTTCCAACACCTCATCCTGCCTGAGAGACATCCCCCAcatactgAGCTGCTGGACCTGCAGCCGTTGCCCATCACCGCCCTGGGGAACCCGGAGTACGAGAGTCTGTACAAGTTCACCCACTTCAATCCCATCCAGACACAGATCTACCACACCGACACCAACGTCCTGCTGGGGGCGCCAACGGGCTCCGGTAAAACCATCGCTGCCGAGTTGGCCATGTTCCGAGTCTTCAACCAGTACCCTACCTCCAaggtGGTGTACATTGCCCCTCTGAAAGCTCTGGTCAGGGAGAGGGTTGAGGACTGGAAGATCAGGATAGAGGAAAAACTGGGGAAGAAGGTTGTGGAGCTGACAGGTGATGTGACTCAAGACATGCGGGCCATCGCCGCGGCCGACCTTATCGTGACCACGGTGGAGAAGTGGGACGGCGTGAGTCGCTAAAGGCAGAACCGCAGCTACGTCCAGAAAGTAGCCATACTCATCATCGTTGAGATCCACCTGCTAGGGGAGGACAGAGGTCCTGTGCTGGAGGTCATAGTGTCCAGGACCAACTTCATCTCCTCCCACACCAACAAGACTGTCCGGTGGTGGGCCTGTCCACGGGTGGGTTTGTTTAACTTCCGGCCCTCTGTGCGTCCCGTCCCATTGGAGTTTCACATCCACGGCTTCCCAGGACAGGCCAGCATGAACAAGCCTGTGTTCCAAGcGATTCGCAGTCACTCTCCAGCCATGCCTGTTCTTATCGTTATGTCGTCGCGGCGACAGACTCGTCTGACAGCTCTAGAGCTGATAGCCTTCCTGGCCACGGAGGACGACCCCAAACAGTGGCTGCACCAGGACAAGACTCAGATGACAGACATCATCGCCACGGTGAGGGAGTCCAACCTGAAGCTGACGTTGGCGTTTGGTATCGGCATGCATCACACTGGACTacaccagagagacaggaagactgTGGAGGAACTGTTTGTCAACTGCAAGATCCAGataCTGATAGCCACCAGTACTCTGGCCTGGGGAGTCAACTTCCCTGCCCATCTGGTCATTTTCAAAGGTACTGAGTACCAGACGCTACGTGGACTACCCCATCACAGACGTGCTGCAGATGATGGGCCGTGCAGGCCGCCCTCAGTATGACGACCAAGGCAAAGCTGTGATCCTGGTCCACGACATCAAGAAAGACTTCTACAAGAAGTTCCTCTACGAACCCTTCCCTGTTGAGTCCAGTCTCCTGGGTGTCCTGTCAGACCATCTGAACGCTGAGATCGCTGCAGGGACCATCACCTCTAAACAGGATGCTATGGACTATATCACCTGGATGTACTTCTTCCGCAGGCTGGTCATGAACCCCAGTTACAACAGCCTGGATGACATCAGCCACGAGACCATCAACAAGTTCCTGTCCAACCTGGTGGAGAGGAGTCTCCGAGACCTGGAGTGTTCCTACTGTATGGAGATAGGAGAGGATGATTGCACCATTGAGGCCCTGACGTACAGTCGTATCTCCTCCTACTACTACCTGAAGCACCAGACAGTCAGGATGTTCAAGGAGAGGCTGAGGGCTGAGCTGCCCATCCAGGACATCCTCTCTTTGCTGACTgaTGCTGAGGAGTACGGGGAGCTGCCCGACAGCGCCCACATCAAGACCCACCTGCTACTGCAGGCCCATTTCAGCCGCGCACAGCTGCCCTGCTCCGACTACGGCACCGACACCAAGACCGTGCTGGACAACGCCATACGCATCTGTCAGGCCATGCTGGACGTAGCAGCCAACGAGGGCTGGCTGGTGACTGCTCTCAGCATCTGTAACCTGGTGCAGAtgatcattcagggcaggtggctGTGACTCCTCTATACTGACCCTACCTACCATAGAGCAGCAGCACCTCTACCTGTTCAGGAAGTggaggggtggagccaGGGGCTTCCACAGACCAATAGAAGGGCTCCCTAAGCTGGTTGCCTCCTGCGAGGGACGGGAGAACACCTTCGCTGCCATCTTGGGGGAGGAGCTTCAACCCCATCAGATCTCCCAGgcCTGGTCGTTCCTCAGCCATCTGCCGGTGGTGGAGGTGCGTCTGAGTGTGAAGGGTTGGTGGGAGGGGTGTGGGGAGCAGGCACAGCGCCCCCTCCCTGCGGCCAGGGGAAAGCTCAGAGACGAAAGAAGCTGGCTGGACGTCCACGCTGACCAGGAGTACGTCCTGCAGGTCTCACTGCAGCGCATCAACACCGGCCAGCAGAGGAGGAAGCAGGACAGTAAGACCCAGGCCCCCAGGTTCCCCAAGAATAAGGATGAGTGAGGGCTGGTTTCTGGTTCTAGGAGAGGTGGAGCGCAGAGAGCTACTGGCCGTCAAACGCATCGGATACTGCCGACACCGCAGCACCGTTTCCCTGGCCTTCTACACCCCTGAGATGACCGGAAAGTGTATCTACACGCTATGCTTGATGAGTGACAGTTACCTGGGTCTGGACCAGCATTATGACCTCCACCTCAACATGACCCCTGCCTGCATCGCAGCCCAGGTCAACAGTGAAGTCACTGAGGCCATGGGAGGAATGTCCGTCAAGTGATACATCAACATGATGACATCATCATGAGTGACATGGTGACAATGACCATCTAAAAATGACAAGAGACAATGGCCATGTGTATTTAGAGGCCAATGTTTGGGATATTTACCCTGATGATGTGATGGTGGTAATTGTGTGACTGGATGTTAGCCTTAAAGCAGGGATGTagggaac
>TU261556
tccagataCTGATAGCCACCAGTACTCTGGCCTGGGGAGTCAACTTCCCTGCCCATCTGGTCATTTTCAAAGGTACTGAGTACCAGACGCTACGTGGACTACCCCATCACAGACGTGCTGCAGATGATGGGCCGTGCAGGCCGCCCTCAGTATGACGACCAAGGCAAAGCTGTGATCCTGGTCCACGACATCAAGAAAGACTTCTACAAGAAGTTCCTCTACGAACCCTTCCCTGTTGAGTCCAGTCTCCTGGGTGTCCTGTCAGACCATCTGAACGCTGAGATCGCTGCAGGGACCATCACCT

Function

NR:

description
LOW QUALITY PROTEIN: activating signal cointegrator 1 complex subunit 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503770 False 4123 mRNA 0.54 30 16619192 16674738
TU261556 True 304 TUCP 0.40 3 16643351 16647584

Neighbor

gene id symbol gene type direction distance location
LOC118936471 NA coding upstream 21190 16592154 ~ 16598002 (+)
LOC118946105 LOC106605491 coding upstream 43969 16551435 ~ 16575223 (+)
LOC118944532 NA coding upstream 103295 16477925 ~ 16515897 (+)
LOC118946091 LOC106605491 coding upstream 142823 16457719 ~ 16476369 (+)
hace1 hace1 coding upstream 645849 15939449 ~ 15973343 (+)
sim1a LOC106579462 coding downstream 4155 16678893 ~ 16700834 (+)
LOC110511998 LOC106579451 coding downstream 85763 16760501 ~ 16787229 (+)
LOC100653482 mrap2 coding downstream 120190 16794699 ~ 16801793 (+)
LOC110503758 LOC106605505 coding downstream 547844 17222582 ~ 17341150 (+)
LOC110505127 NA coding downstream 682036 17356774 ~ 17359570 (+)
G228451 NA non-coding upstream 389847 16226906 ~ 16229345 (+)
G228414 NA non-coding upstream 452827 16166023 ~ 16166365 (+)
G228223 NA non-coding upstream 793484 15825304 ~ 15825708 (+)
G228034 LOC106578507 non-coding upstream 802052 15815287 ~ 15817140 (+)
G228032 NA non-coding upstream 817337 15801361 ~ 15801855 (+)
G228707 NA non-coding downstream 16806 16691544 ~ 16693504 (+)
G228711 NA non-coding downstream 27914 16702652 ~ 16702864 (+)
G228715 NA non-coding downstream 32421 16707159 ~ 16734495 (+)
G228722 NA non-coding downstream 36172 16710910 ~ 16711817 (+)
G228752 NA non-coding downstream 87383 16762121 ~ 16762351 (+)
zgc:162160 LOC106605640 other upstream 922548 15672260 ~ 15697397 (+)
G227606 NA other upstream 1374910 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 1523279 15072005 ~ 15095913 (+)
G227405 NA other upstream 1621117 14997159 ~ 14998075 (+)
G230916 NA other downstream 1620616 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 1895271 18569698 ~ 18588248 (+)
G231438 NA other downstream 2176511 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 2551628 19226366 ~ 19234295 (+)

Expression


Co-expression Network