sim1a (LOC106579462)


Basic Information

Item Value
gene id sim1a
gene name LOC106579462
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16678893 ~ 16700834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592640.2
ATAGGGAAATGGAACAGACTACTTACTGCCCAATGAGGGACAGGCTGGCTGGTAGTAACGCGGGGGTGGGCCGTTCTCGGATTCTACAGGAGAAATAGGGAGATCGTGTTAAAAACAGAGGAGGGTTTGAAAAACTACTTTTGATACACTCGCAACCctaaaggagagatgatggaagTCTAGTGTGCCTCTGCTGTCGTAGTTGAAAGTCTACTGCGGATTTTTGGAGAAACTAGGACATGAGAACAGAAGTGAGAAGAGGTAACATTGCTGCGGACTTCTGGAAAAAAAAGTTGGGTTTGGTTGTATCGACGCTCCGAGAGGGACATGATGTCTTCGGAAACGGTGTGAAGGACCTGAACTCCTCAAAGAGATGTTGGGCCCAAGCGGACGTCATGTACAGTGAATCTGACTCTATGGGCGATTACTCCTCATAATAAACAGGATACTCAGATCCTTCTTCGCCAGCTTAATCTATCCTGGAAGTAACATGGGAATGTTCATATTTTATTTCTGGATTTAGTCAGGAAGGAGAACCGAGCAGCTACGGTGTTAACTTGACCAACCACACAAGGTATCCGCGCCAGAGAAATACAGTTCGTGCTTTTGAAGAGCCAGCGCATTAAACAGAATGCATGGGAGTCAAAGCAGTAAAATGATCTAGAATTGAGATCTGTATATTGACAGACTTTTATTGTTTGGTGAAATCACGCCCAGGTCGTGGAAAATAGAATTATTCGAAAATGAAAGAAAAATCGAAAAATGCTGCCCGGACTCGACGGGAAAAGGAAAATAGTGAATTCTATGAGCTGGCCAAGCTGTTGCCTTTACCTTCTGCCATCACGTCTCAACTTGATAAAGCTTCAATTATTCGACTCACAACAAGTTACTTGAAAATGAGAATTGTTTTTCCTGAAGGGCTGGGAGAGTCCTGGGGCCACGTGAGTCGGACCAGATCTCTGGATAATGTTGGGCGAGAGCTGGGATCACATCTGTTACAGGTGGGATCACATATACTACAGACGTTGGACGGGTTCATTTTTGTGGTTGCTCCGGACGGGAAAATAATGTACATATCTGAAACAGCATCGGTCCATTTGGGCTTATCACAGGTAGAGCTGACGGGAAATAGTATTTACGAGTACATCCACCCCGCTGACCACGACGAAATGACAGCCGTGCTGACAGCTCACCAACCCTGCCACTCGCACTTTGTCCAAGAATATGAAATGGAACGTTCATTCTTTTTGAGAATGAAATGCGTCCTCGCGAAAAGAAATGCTGGTCTGACATGTGGTGGATACAAGGTGATCCACTGCAGCGGGTACCTAAAGATCCGTCAGTACAGCCTGGACATGTCTCCATTTGATGGCTGCTATCAGAACGTGGGCTTGGTGGCGGTGGGCCACTCTCTACCCCCTAGCGCTGTCACTGAAATCAAACTACACAGCAACATGTTCATGTTCAGAGCCAGCCTGGATATGAAGCTCATCTTCCTCGACTCCAGGGTAGCTGAGCTGACAGGCTATGAGCCCCAGGATCTTATAGAGAAGACCCTCTATCACCATGTCCATAGCTGTGACTCCTTCCACCTGAGATGTGCACACCACTTGTtgCTGGTGAAAGGCCAAGTGACCACTAAGTACTATAGGTTCCTGGCTAAGCAGGGTGGCTGGGTTTGGGTCCAGAGCTATGCCACCATCGTACACAACAGTCGTTCCTCCAGACCCCACTGTATCGTCAGTGTCAACTACGTCCTCACGGATACTGAGTATAAAGGACTCCAGCTGTCTCTGGACCAGGTGACAGACACCAAGCCCTCCGTCCCCTTCAGCAGTGCTCCCACCAGCCTCACTGAGAACCGCAGAGCACCCAAGAGCAGAGTGTCCCGAGCCAAGGCCAAGGCTCGACTCTCCCCCTACACCCAGtaCGCTGGTTTCCAGGCCGAGCGTTCAGAGTCGGACCAGGATAGCCCTTGGGCAGGATCTCCCCTCACAGACTCCGCTTCCCCTCAGCTGCTggagcagggggaggggcttggcaCCTCCTGTGCCTACAGGCAGTTCTCCGAGCCACGTCCCCTCTGCTACAGCCTCCCAATCACTGAGGAGcaacaccaccatcacaaccccaGCGACAGCCACTCCCACCTCGACACACACGGCCACAAGCAGACGTGCGAGCGGGGCCGCTGTGAGGCAGGGAGGTACTTCCTGGGTGCTCCCCAGGGTGGGAGAGAGGCGTGGTGGGGAGTTGCCCGCTCTGTGCTGCCCCTGGTCAAGACCTCATCCCTGGAGAATGGAGAGGGATATGAGAGCAGCGTGCCCCACATCACCTCCATCCACAGTCTGCATAACCGTGGCCAATGGGACCAGGACAGTGTGGTCAGCTCGCCAGACGGGGGCTCCGCCAGCGACTCTGGGGACCGTTACCACGCAGACTACTTCCGGGCCAGCCCCCAGGAGCCGAGCAAGATCGAGACCCTGATCCGAGCCACGCAGCAGATGATCAAGGAGGAGGAGAATCGTCTGCAGCACCGCAGCAAGCTCCACCCAGGCCCTGACACTCCTCTAGGGCCTGCCAACGGCCTCCCGAAGGGCCCCGGCCCCTGCTTCACCACCGACTACCCCCAGGGGGTGCTACAGAGTGTGTTGTGCCGTGGCCTGGGTCAACTGGGTCAGGTGATCAGCCCCGGATCAagccctgcccctctctccaGGCTCAGCAGCCCAGGGTCTGACCACTACCTCCCCAAGCCCAAAAACTACCTCCAGCAGGCAGGACAGTCAgacctgtcccctctctcccagCCCCCCTACCACCAGCTTGGCCGTCCAGGCCCCTGCACATCCTCCTCCCCTACCCCTGCCCCGGCCCTCTACCCTTCCCACCCCCAAACCCAAATGGGGAGGCCTTATCTGGACAAGCAAGCTGCTACCTACTCCCTGACGGGCTACGCTCTGGAGCACCTGTATGACCCCGAGAGCCTCAGGGACTTCTGTTCCTCCGCTGGCTCCACCCACTACGACGTGACTTCACACCTGCGCATGCAGGCAGAGCAGGGGCCGGGACACAAGGGGACCTCCGTCATCATCACCAACGGCAGCTAACGCCTGCTTGTCCAATAATACTAAAGTCTAAAATGtcagcctattccctacataggggaatagggtgccatttccctgcacgctacttttgaccaaagcctgcatagggctctggtcaaaagtaatgcactacatagggaataggctgaCATTTCGGGTGCTCACTAAAACACAGGAAGAAGAAACTGTAGATCCATGGAATCTCCATGCTATAGCCCAGCTTCAACTGCCTCATCTGCATTTTAGCCAGCAAAAATACTTTTTTCCTGTCCTACTTCTTGTGTTtccttttgtttttgtttttacagaGCTACGTTATTCCATTTGCACTGTCAGAAATGGAGTTTCATTGTGGGAACCTCATCCCTAGGGTTGAAGATAGGGTTGTGGATATGTTTTGAGTTAACCGGGAAGGGTTCAACGTTAGTGCACTTTTTAGTGTTGGTGGTCAGAATCCCCTTATCACAGCACAACTCTATAGAGTTAAAGTCAACTAGACCTGGTTAAATTGATATATTTTTTGTCCGTGCTACAGACGGCTATATCtgtctgctaatacaggactagtaaaggcccagggCAGTACTTTTGCGATAATAATTCAGGGGgtactgcagcaccctcagcacccctacttccagtAGCTATGATTAAAGGTGTGCAGTATAGAGATGAAGCAAAAATGACACAAAAACAATTCACAGACATCAATGATTATGCAAATTCATTCTATCTATGTTCTCCCCAGTAGGTAAGCTATGGATTAAGGGAAGTGTACCCACACTTTCAGAGAAAGCAAAGGGGCGATCTAAGGGATACATGCAAGAGATGGTACATGTGCCTACATTTACATTGAGACATACAGCAGTTTACCTGGACTGTCAGATAGCAGGCTTTACTTGGGCTAAATGTCTTGTTGGTGTGTATAACAACAGTTATTAGTGCTTTGGTCTGTCACCTCAGTGAGGATAACAACATTATATACAGCCTCTAATGAACAACCTTATTGAGGTGTGATTACTGAGAGGCTAAGGGTCAATATGATGACGTGGATTGTCTTATTAGCCAGGTGTAGTGGTAAACGCTGAGGGGGAATTTAGCATGCTTACAAGGTAAACACTGAAGTGGGAGTTAGCATGCTAACAAAGCTGACGTGGGAGTTAGCATGTTAACAAAGCTGATGTGGGAGTTAGCATGCTAACAAGGCTGACTCGAGAGTTAGTATGCTAACTCGGCTGACGTGAGAGTTAGCATGCTAACACGGCTGACGTGAGAATTAGCATGCTAACAAGGCTGACGTGAGAGCTAGCATGctaacatggctgaggtgggagTTAGCATACTTATAAGGTTGAGCATGTGTGTATCTCCGAAGCATGTCGTGTTAAATTGTCAACAAGGGTAAACAAGGGGAAAGAGATGCTCATTGTTTATTGAACATTTGATGAGATGAAGGAAAAATCAAGAGAGGTGAAATGAAGAGGTTGTGTCTGCTGTGGTTGATTGACTAGTACAGTGTTTAGAAGAGGTCACTTTCTGTCTAATACTACAGAATGATGCCATGGCAACGCTTGCTTGTACCAACATGACGTTAGTTATTAGTACCATAATAATGAGTTATATGACAATTCATGAGATGTTTTCACAAAGTCATGATATATGCAGCAATATGCAATCCAACCAATTGGGTATTCGTTTAGACAGCCTAAATCCTCATCACATCTGATCATGCTAATGCTTGCATTACCTTTCACTAATGCTTGTGACAACCTTCatatcatgtttattatactgtTTTGTAGGCAGTGTGACACATTTCAAACGTTCCCTTGGATTCTATCGTAAATGTGGTTACCATATCTCTTATATTTATACGTTTGGATTTGTTAGTTTTCTGAATTGTGCTTCTCCAAAGTTATTTATGATGTAAATATGCTCAGAAAAAGACACCATTTTGAAGCACAGGGGaaaagttgtatttatttagtgaATGTTTATTTAGGATTTTGAAGTATAGTTGCAATCAAAACAGTCTGCTTGCATATGAGTGTGTTTTGATTTAAACAAATTCTAtgaaaaaattaaataaacagAACACTTTTT
>XM_021592643.2
ATAGGGAAATGGAACAGACTACTTACTGCCCAATGAGGGACAGGCTGGCTGGTAGTAACGCGGGGGTGGGCCGTTCTCGGATTCTACAGGAGAAATAGGGAGATCGTGTTAAAAACAGAGGAGGGTTTGAAAAACTACTTTTGATACACTCGCAACCctaaaggagagatgatggaagTCTAGTGTGCCTCTGCTGTCGTAGTTGAAAGTCTACTGCGGATTTTTGGAGAAACTAGGACATGAGAACAGAAGTGAGAAGAGGTAACATTGCTGCGGACTTCTGGAAAAAAAAGTTGGGTTTGGTTGTATCGACGCTCCGAGAGGGACATGATGTCTTCGGAAACGGTGTGAAGGACCTGAACTCCTCAAAGAGATGTTGGGCCCAAGCGGACGTCATGTACAGTGAATCTGACTCTATGGGCGATTACTCCTCATAATAAACAGGATACTCAGATCCTTCTTCGCCAGCTTAATCTATCCTGGAAGTAACATGGGAATGTTCATATTTTATTTCTGGATTTAGTCAGGAAGGAGAACCGAGCAGCTACGGTGTTAACTTGACCAACCACACAAGGTATCCGCGCCAGAGAAATACAGTTCGTGCTTTTGAAGAGCCAGCGCATTAAACAGAATGCATGGGAGTCAAAGCAGTAAAATGATCTAGAATTGAGATCTGTATATTGACAGACTTTTATTGTTTGGTGAAATCACGCCCAGGTCGTGGAAAATAGAATTATTCGAAAATGAAAGAAAAATCGAAAAATGCTGCCCGGACTCGACGGGAAAAGGAAAATAGTGAATTCTATGAGCTGGCCAAGCTGTTGCCTTTACCTTCTGCCATCACGTCTCAACTTGATAAAGCTTCAATTATTCGACTCACAACAAGTTACTTGAAAATGAGAATTGTTTTTCCTGAAGGGCTGGGAGAGTCCTGGGGCCACGTGAGTCGGACCAGATCTCTGGATAATGTTGGGCGAGAGCTGGGATCACATCTGTTACAGACGTTGGACGGGTTCATTTTTGTGGTTGCTCCGGACGGGAAAATAATGTACATATCTGAAACAGCATCGGTCCATTTGGGCTTATCACAGGTAGAGCTGACGGGAAATAGTATTTACGAGTACATCCACCCCGCTGACCACGACGAAATGACAGCCGTGCTGACAGCTCACCAACCCTGCCACTCGCACTTTGTCCAAGAATATGAAATGGAACGTTCATTCTTTTTGAGAATGAAATGCGTCCTCGCGAAAAGAAATGCTGGTCTGACATGTGGTGGATACAAGGTGATCCACTGCAGCGGGTACCTAAAGATCCGTCAGTACAGCCTGGACATGTCTCCATTTGATGGCTGCTATCAGAACGTGGGCTTGGTGGCGGTGGGCCACTCTCTACCCCCTAGCGCTGTCACTGAAATCAAACTACACAGCAACATGTTCATGTTCAGAGCCAGCCTGGATATGAAGCTCATCTTCCTCGACTCCAGGGTAGCTGAGCTGACAGGCTATGAGCCCCAGGATCTTATAGAGAAGACCCTCTATCACCATGTCCATAGCTGTGACTCCTTCCACCTGAGATGTGCACACCACTTGTtgCTGGTGAAAGGCCAAGTGACCACTAAGTACTATAGGTTCCTGGCTAAGCAGGGTGGCTGGGTTTGGGTCCAGAGCTATGCCACCATCGTACACAACAGTCGTTCCTCCAGACCCCACTGTATCGTCAGTGTCAACTACGTCCTCACGGATACTGAGTATAAAGGACTCCAGCTGTCTCTGGACCAGGTGACAGACACCAAGCCCTCCGTCCCCTTCAGCAGTGCTCCCACCAGCCTCACTGAGAACCGCAGAGCACCCAAGAGCAGAGTGTCCCGAGCCAAGGCCAAGGCTCGACTCTCCCCCTACACCCAGtaCGCTGGTTTCCAGGCCGAGCGTTCAGAGTCGGACCAGGATAGCCCTTGGGCAGGATCTCCCCTCACAGACTCCGCTTCCCCTCAGCTGCTggagcagggggaggggcttggcaCCTCCTGTGCCTACAGGCAGTTCTCCGAGCCACGTCCCCTCTGCTACAGCCTCCCAATCACTGAGGAGcaacaccaccatcacaaccccaGCGACAGCCACTCCCACCTCGACACACACGGCCACAAGCAGACGTGCGAGCGGGGCCGCTGTGAGGCAGGGAGGTACTTCCTGGGTGCTCCCCAGGGTGGGAGAGAGGCGTGGTGGGGAGTTGCCCGCTCTGTGCTGCCCCTGGTCAAGACCTCATCCCTGGAGAATGGAGAGGGATATGAGAGCAGCGTGCCCCACATCACCTCCATCCACAGTCTGCATAACCGTGGCCAATGGGACCAGGACAGTGTGGTCAGCTCGCCAGACGGGGGCTCCGCCAGCGACTCTGGGGACCGTTACCACGCAGACTACTTCCGGGCCAGCCCCCAGGAGCCGAGCAAGATCGAGACCCTGATCCGAGCCACGCAGCAGATGATCAAGGAGGAGGAGAATCGTCTGCAGCACCGCAGCAAGCTCCACCCAGGCCCTGACACTCCTCTAGGGCCTGCCAACGGCCTCCCGAAGGGCCCCGGCCCCTGCTTCACCACCGACTACCCCCAGGGGGTGCTACAGAGTGTGTTGTGCCGTGGCCTGGGTCAACTGGGTCAGGTGATCAGCCCCGGATCAagccctgcccctctctccaGGCTCAGCAGCCCAGGGTCTGACCACTACCTCCCCAAGCCCAAAAACTACCTCCAGCAGGCAGGACAGTCAgacctgtcccctctctcccagCCCCCCTACCACCAGCTTGGCCGTCCAGGCCCCTGCACATCCTCCTCCCCTACCCCTGCCCCGGCCCTCTACCCTTCCCACCCCCAAACCCAAATGGGGAGGCCTTATCTGGACAAGCAAGCTGCTACCTACTCCCTGACGGGCTACGCTCTGGAGCACCTGTATGACCCCGAGAGCCTCAGGGACTTCTGTTCCTCCGCTGGCTCCACCCACTACGACGTGACTTCACACCTGCGCATGCAGGCAGAGCAGGGGCCGGGACACAAGGGGACCTCCGTCATCATCACCAACGGCAGCTAACGCCTGCTTGTCCAATAATACTAAAGTCTAAAATGtcagcctattccctacataggggaatagggtgccatttccctgcacgctacttttgaccaaagcctgcatagggctctggtcaaaagtaatgcactacatagggaataggctgaCATTTCGGGTGCTCACTAAAACACAGGAAGAAGAAACTGTAGATCCATGGAATCTCCATGCTATAGCCCAGCTTCAACTGCCTCATCTGCATTTTAGCCAGCAAAAATACTTTTTTCCTGTCCTACTTCTTGTGTTtccttttgtttttgtttttacagaGCTACGTTATTCCATTTGCACTGTCAGAAATGGAGTTTCATTGTGGGAACCTCATCCCTAGGGTTGAAGATAGGGTTGTGGATATGTTTTGAGTTAACCGGGAAGGGTTCAACGTTAGTGCACTTTTTAGTGTTGGTGGTCAGAATCCCCTTATCACAGCACAACTCTATAGAGTTAAAGTCAACTAGACCTGGTTAAATTGATATATTTTTTGTCCGTGCTACAGACGGCTATATCtgtctgctaatacaggactagtaaaggcccagggCAGTACTTTTGCGATAATAATTCAGGGGgtactgcagcaccctcagcacccctacttccagtAGCTATGATTAAAGGTGTGCAGTATAGAGATGAAGCAAAAATGACACAAAAACAATTCACAGACATCAATGATTATGCAAATTCATTCTATCTATGTTCTCCCCAGTAGGTAAGCTATGGATTAAGGGAAGTGTACCCACACTTTCAGAGAAAGCAAAGGGGCGATCTAAGGGATACATGCAAGAGATGGTACATGTGCCTACATTTACATTGAGACATACAGCAGTTTACCTGGACTGTCAGATAGCAGGCTTTACTTGGGCTAAATGTCTTGTTGGTGTGTATAACAACAGTTATTAGTGCTTTGGTCTGTCACCTCAGTGAGGATAACAACATTATATACAGCCTCTAATGAACAACCTTATTGAGGTGTGATTACTGAGAGGCTAAGGGTCAATATGATGACGTGGATTGTCTTATTAGCCAGGTGTAGTGGTAAACGCTGAGGGGGAATTTAGCATGCTTACAAGGTAAACACTGAAGTGGGAGTTAGCATGCTAACAAAGCTGACGTGGGAGTTAGCATGTTAACAAAGCTGATGTGGGAGTTAGCATGCTAACAAGGCTGACTCGAGAGTTAGTATGCTAACTCGGCTGACGTGAGAGTTAGCATGCTAACACGGCTGACGTGAGAATTAGCATGCTAACAAGGCTGACGTGAGAGCTAGCATGctaacatggctgaggtgggagTTAGCATACTTATAAGGTTGAGCATGTGTGTATCTCCGAAGCATGTCGTGTTAAATTGTCAACAAGGGTAAACAAGGGGAAAGAGATGCTCATTGTTTATTGAACATTTGATGAGATGAAGGAAAAATCAAGAGAGGTGAAATGAAGAGGTTGTGTCTGCTGTGGTTGATTGACTAGTACAGTGTTTAGAAGAGGTCACTTTCTGTCTAATACTACAGAATGATGCCATGGCAACGCTTGCTTGTACCAACATGACGTTAGTTATTAGTACCATAATAATGAGTTATATGACAATTCATGAGATGTTTTCACAAAGTCATGATATATGCAGCAATATGCAATCCAACCAATTGGGTATTCGTTTAGACAGCCTAAATCCTCATCACATCTGATCATGCTAATGCTTGCATTACCTTTCACTAATGCTTGTGACAACCTTCatatcatgtttattatactgtTTTGTAGGCAGTGTGACACATTTCAAACGTTCCCTTGGATTCTATCGTAAATGTGGTTACCATATCTCTTATATTTATACGTTTGGATTTGTTAGTTTTCTGAATTGTGCTTCTCCAAAGTTATTTATGATGTAAATATGCTCAGAAAAAGACACCATTTTGAAGCACAGGGGaaaagttgtatttatttagtgaATGTTTATTTAGGATTTTGAAGTATAGTTGCAATCAAAACAGTCTGCTTGCATATGAGTGTGTTTTGATTTAAACAAATTCTAtgaaaaaattaaataaacagAACACTTTTT

Function

NR:

description
single-minded homolog 1-A-like isoform X2

GO: NA

KEGG:

id description
K09100 SIM; single-minded

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592640.2 False 5213 mRNA 0.48 12 16678893 16700834
XM_021592643.2 True 5192 mRNA 0.48 12 16678893 16700834

Neighbor

gene id symbol gene type direction distance location
LOC110503770 LOC106605493 coding upstream 4155 16619192 ~ 16674738 (+)
LOC118936471 NA coding upstream 80891 16592154 ~ 16598002 (+)
LOC118946105 LOC106605491 coding upstream 103670 16551435 ~ 16575223 (+)
LOC118944532 NA coding upstream 162996 16477925 ~ 16515897 (+)
LOC118946091 LOC106605491 coding upstream 202524 16457719 ~ 16476369 (+)
LOC110511998 LOC106579451 coding downstream 59667 16760501 ~ 16787229 (+)
LOC100653482 mrap2 coding downstream 94094 16794699 ~ 16801793 (+)
LOC110503758 LOC106605505 coding downstream 521748 17222582 ~ 17341150 (+)
LOC110505127 NA coding downstream 655940 17356774 ~ 17359570 (+)
LOC110511964 LOC106605506 coding downstream 762129 17462963 ~ 17476591 (+)
G228451 NA non-coding upstream 449548 16226906 ~ 16229345 (+)
G228414 NA non-coding upstream 512528 16166023 ~ 16166365 (+)
G228223 NA non-coding upstream 853185 15825304 ~ 15825708 (+)
G228034 LOC106578507 non-coding upstream 861753 15815287 ~ 15817140 (+)
G228032 NA non-coding upstream 877038 15801361 ~ 15801855 (+)
G228711 NA non-coding downstream 1818 16702652 ~ 16702864 (+)
G228715 NA non-coding downstream 6325 16707159 ~ 16734495 (+)
G228722 NA non-coding downstream 10076 16710910 ~ 16711817 (+)
G228752 NA non-coding downstream 61287 16762121 ~ 16762351 (+)
zgc:162160 LOC106605640 other upstream 982249 15672260 ~ 15697397 (+)
G227606 NA other upstream 1434611 15243946 ~ 15244282 (+)
LOC110511049 LOC106605627 other upstream 1582980 15072005 ~ 15095913 (+)
G230916 NA other downstream 1594520 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 1869175 18569698 ~ 18588248 (+)
G231438 NA other downstream 2150415 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 2525532 19226366 ~ 19234295 (+)

Expression


Co-expression Network