LOC110503758 (LOC106605505)


Basic Information

Item Value
gene id LOC110503758
gene name LOC106605505
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17222582 ~ 17341150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970577.1
CAGGTGGCAGGTCATGTGATGTTTAAGCCGTAGCTGTCTGGAAGCTGCTGCTAAATTGGAGTTGAATCTCAGAGCagacactcactctctctctctttccagagGAAGACAGACCCAAAACCACCAGGACAGGATGTCTTACGGATCCATCGATGGAGGCTCCTTTGGAGGCAGCCGAAACCCTTTCGGAGGCCCCAAGAGGCAGGGCTACCAACCAGTAGCAACACAGGTCAGCTCCTCAGAGCTGCAAGACGTGTTTCAAGAGACCTCCTCCAACATTTTCCAGATCAATGCAAATGTTGTAACATTAGAGAAGAGTCTTCAATCATTAGGAACGTCCAGAGACACTGCTGAACTGCGACAGAGCCTACATTCTACACAGCAGCAAACCAACAATGTCATCACCAGCACCAGTCAACTCATCAAACAActctctgacatcatcactggcTCTACACGGCAAGATCATCTTCATCTGACTAGACTGAAGACAGGACTCTCAGAGTCGGTTCAACGCTATGGAGATCTGCAAAAGAAAATTGCAGACCGTTCGAGGGCCTTGCTACCCCCGGCACAGACAGAAATGAAGCAGagTCCCCAGACTCCGTTTGCAGAGCTGTGTGAGGAGGGGGGTCCCCTGTTTGGCGGTGCAGCAGAGAGCTCCGGGGGGGATGGACAGGAGCAAGCGTTCCTCTCAGAGATCAGTGAGGAAGATGTGGAGGCCCTGCGCCAGAGAGAAGAGGCCCTGCTGCAGATTGAGAGGGACATGTTGGATGTCAGCCAAATCATGCGAGATCTGGCCAGTATGGTGCACGAGCAGGGAGATGCCATAGATAGCATTGAGGACTACATTCAGACCACCACATCCAACGTGGAGTCAGCCAATCAGGAGCTAGCAAAGGCCAGCCATCACCAGAGGCAGATTAGGAAGAGGAAGTGTTACATGCTGGTGGCGGGAGGCTTCATCCTCATccttctcatcatcatcatcgctgtGTCAGCAAGAAAATGAAACCAACCCCAGAGgTAGCTGCAGTCATAGTGCTGTGACCTCTCTGCTTCTGccccacctgaccacctgacccctgacctttacCAGCAGTCTCAGACAGGAGGGGCTGCCCCACACCAACACCTCTACTTCGTCATGGCTGTCTCTCCTTAGTTATGTAGTTAGATATTTGGTGtacgcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtcaggcaGGGGGCGGGGGGCGGGGGGATAGCTGGTACTTATATTATCATCTTTAAATGAATGGCATACTAGTCTACTGTGGTTCTTTTATACTGTACCTAACTATGGTAGCTGTGGCAGCCAACCAGCCAATCATGGAAGAGAGGTATTGATGCATCCACTTACTTTACCCTGATTTCCTCTGTGTTTGTttacttgtttttgttttttaagcACTGGATCATATTTACCTGATGCTACTGTATCTACGAAGTATGATATTAAAATGTTGTGTAGTACTTATGATTATATAAATACATAAATGATCATTAGACAAATGTATCAAATGGTGTGATAAAAAGAGTACTTTAAAATATGAtttacagcttttttcagtcCTATTTTACTATCATTTTACTCTtgctatcctctgtctctctctctcgctcatgcaaacacagacacacttgCACACAAACATATCTATCTGCCATGATCTGAGTGTAAAGAGTGGAACATGTGACATAAATTACAGGTTTGTTGATCGCCTGAAGCACTCACCCTCTGGCCAATCAATAGGCAGTAGAGTCAACCACTTTCCCTCCATTCCCTCCAAATGTCTCATCCTGTTACATATTTTCCAGGAAGGCTTATTTAGAGATACTAATAGACTTAATTAATCTCTCAGAGGGGTGATTATCATCTCTCTGACTTCTCCCGtgggctgtatgtgtgtgttatcacTGAGTTCTCTGAAAAGATGGGTAAGACTCTTCAGTGTGCAGCTTCAGTGTCAGCTCCTAGCCTTTTCTGCTTCCGACGTCATGCATCTTTTATTATTACTCTTCCCTCACAATCCACCGGCATCAGTGGGCTCTAGCTCTTAACTCATCGCATGCATACACAAATCTGAAGtgttttattattgttattttctcTTAGTCTTACTGAGTCAGTGTGCCCAGATATTCATTTGGGTTTTTTAATTTGTACCTTGCAGAGAAAAGGAACAAAATGAACCAAAAGCACCAAAATGTTTGTGAATCTATCACAGAACTTTGGTGGCACTCTAATTGGGGAGGAAGGACTCGTggcaatggctggagcggaatcttGGAATGGTATTAAAAACATcaaaacatggtttccatgtgtttgatgctattccatactccgttccagccattattatgagccgtcctcccctcagcagtctctaCTAGGAACCTATCTTCAAGGTCTGGCATCACTATTCAAATCTATGCATATATTTAAGGTGATGTAACTTACTGTAGCTTCTCATATCCCTGACAAAAGCTTAAAGTTTCTAGAATTGTGGTGTGGGCGATGAGAAGATGAATGATAGCTGTGGATACTTGTGAACGTTTTCTGTTTGAATTAAGTTGTGCTTCATTGATGTGATACGTTCCTTCACTGCTTGTAAAAATTCTCAACGTCGCAAAATATGATTATTCACAATGGTAACGTTATGAGAACGTTGATGTTCAGAAAGGAATTTGTAGCACCTATTACTCTTCAGCTCTTTATTTTACCGTTGTAAAAtgtacttacattgtgtcttttTGATAAATAAAATCTCCTAGATATCAGA
>TU262837
CAGAGGCAGATTAGGAAGAGGAAGTGTTACATGCTGGTGGCGGGAGGCTTCATCCTCATccttctcatcatcatcatcgctgtGTCAGCAAGAAAATGAAACCAACCCCAGAGgTAGCTGCAGTCATAGTGCTGTGACCTCTCTGCTTCTGccccacctgaccacctgacccctgacctttacCAGCAGTCTCAGACAGGAGGGGCTGCCCCACACCAACACCTCTACTTCGTCATGGCTGTCTCTCCTTAGTTATGTAGTTAGATATTTGGTGtacgcaggtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970577.1 False 2865 mRNA 0.45 12 17222582 17341150
TU262837 True 295 lncRNA 0.41 2 17310427 17339493

Neighbor

gene id symbol gene type direction distance location
LOC100653482 mrap2 coding upstream 420789 16794699 ~ 16801793 (+)
LOC110511998 LOC106579451 coding upstream 435355 16760501 ~ 16787229 (+)
sim1a LOC106579462 coding upstream 521748 16678893 ~ 16700834 (+)
LOC110503770 LOC106605493 coding upstream 547844 16619192 ~ 16674738 (+)
LOC118936471 NA coding upstream 624580 16592154 ~ 16598002 (+)
LOC110505127 NA coding downstream 15624 17356774 ~ 17359570 (+)
LOC110511964 LOC106605506 coding downstream 121813 17462963 ~ 17476591 (+)
LOC110503753 LOC106579405 coding downstream 143058 17484208 ~ 17717455 (+)
LOC110511951 LOC106605515 coding downstream 378587 17719737 ~ 17723597 (+)
LOC110511937 LOC106579397 coding downstream 517126 17858276 ~ 17938416 (+)
G229778 NA non-coding upstream 30673 17191699 ~ 17191909 (+)
G229776 NA non-coding upstream 31565 17190805 ~ 17191017 (+)
G229538 NA non-coding upstream 144905 17075550 ~ 17077677 (+)
G229581 NA non-coding upstream 149508 17072865 ~ 17073074 (+)
G229578 NA non-coding upstream 158821 17063483 ~ 17063761 (+)
G229868 NA non-coding downstream 7219 17348369 ~ 17348746 (+)
G229870 NA non-coding downstream 10011 17351161 ~ 17351374 (+)
G229874 NA non-coding downstream 20200 17361350 ~ 17361571 (+)
G230105 NA non-coding downstream 137737 17478887 ~ 17479161 (+)
G230138 NA non-coding downstream 177476 17518626 ~ 17518928 (+)
LOC118944532 NA other upstream 706689 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 1525938 15672260 ~ 15697397 (+)
G227606 NA other upstream 1978300 15243946 ~ 15244282 (+)
G230916 NA other downstream 954204 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 1228859 18569698 ~ 18588248 (+)
G231438 NA other downstream 1510099 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 1885216 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 2485980 19821356 ~ 19844652 (+)

Expression


Co-expression Network