LOC110505127


Basic Information

Item Value
gene id LOC110505127
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17356774 ~ 17359570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470690.2
TTTTGATGGTGCTAAGAacagaatgtatatgttttttctTTACTTTAATAAtattttcttgtggtttttatggaaagttttcttcaCGTTCTGAGAATGGATGGGTGCTCGATCTCCATTTCGACTCAGCCAATGGATGCCCTCCATCTATATCCTCAGCCAACGGATGCCCTCCATCTATCCTCATTGCTTTCACATACCCAGTCCTAGCCACACATGCCTCTTTACAACACAGCCAACACAGCCTGCAAATCAGCTCCTGACAGATACAAGGAGGAATATGAAAGAGGAGCGGGCCATGCTTATTATCGATGATTTCTCCACCACTCAGGGGCTGGCATTGATCGCTGCACGTGAACTGTCGGGCACACAGTTGACGGTGGATGTTTGTGTCAGGGTGTACTGGCGGGCCTCTCTGCTCTGACAGGATGCCTCTTATCACTGACATATGGAtaaatgtctctcctctcctcaagacGCTTCCTGACTCCTCTCAGGccgtctccccctgtctctttccatctctcacaCCCACCCATCCCTCGCTTCTTAAAGAGCAACAAAATGTCACATATCCAAATCCATAAACAGTGATGTATGAGCCcactaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcactatgTTGGCAAATGGGATTCAGAGCCTAAGGCATGTGATCAAGACAGAAATTTACTAGTTGAATAGTAGGGAACACTGGGGAACACTCATTAAAACCACAcatctctgtcctccctcctgtgAGAAAGACAAACATTGATGATACTGGAGGAGTAGGTATAACAGTAGCCTAAGTACTGcccttcctgcagtcagcatgtctaTTAAAAGACTGATTAAAGTTCCAGCCTATACTGTCTGGTCGTATACTGTAGTATGTACTCATCAGTGGTGTCAGCACTATACATCTCTATTCTGAAATGTCACAGGTAGGGCTTCCATCATATACACTATGTCTGTGCCTGAGCaaccttccctcccctccctctccaccctcaaCCCCAACCCAGGAGTCAGCCTGTCCACAGACACCCCCATCACACATCTTAATGACATGAAAGATTCATGGCCCGAGTAAAATAGCCCATTATCTAACTGACAATAAACTAATTTTGGAACCCGGACACTCTGTCATGAAACAACGATAATACTCTGGACGCTTACCAGAATTGCGAGCCCCAGGTACTGCGTCCCTCCAATCTGTCAGAGGAGAATTATGAATATTTGAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470690.2 True 1278 mRNA 0.46 3 17356774 17359570

Neighbor

gene id symbol gene type direction distance location
LOC110503758 LOC106605505 coding upstream 15624 17222582 ~ 17341150 (+)
LOC100653482 mrap2 coding upstream 554981 16794699 ~ 16801793 (+)
LOC110511998 LOC106579451 coding upstream 569547 16760501 ~ 16787229 (+)
sim1a LOC106579462 coding upstream 655940 16678893 ~ 16700834 (+)
LOC110503770 LOC106605493 coding upstream 682036 16619192 ~ 16674738 (+)
LOC110511964 LOC106605506 coding downstream 103393 17462963 ~ 17476591 (+)
LOC110503753 LOC106579405 coding downstream 124638 17484208 ~ 17717455 (+)
LOC110511951 LOC106605515 coding downstream 360167 17719737 ~ 17723597 (+)
LOC110511937 LOC106579397 coding downstream 498706 17858276 ~ 17938416 (+)
LOC110511872 LOC106605517 coding downstream 626437 17986007 ~ 18011922 (+)
G229870 NA non-coding upstream 5400 17351161 ~ 17351374 (+)
G229868 NA non-coding upstream 8028 17348369 ~ 17348746 (+)
G229778 NA non-coding upstream 164865 17191699 ~ 17191909 (+)
G229776 NA non-coding upstream 165757 17190805 ~ 17191017 (+)
G229874 NA non-coding downstream 1780 17361350 ~ 17361571 (+)
G230105 NA non-coding downstream 119317 17478887 ~ 17479161 (+)
G230138 NA non-coding downstream 159056 17518626 ~ 17518928 (+)
G230246 NA non-coding downstream 348648 17708218 ~ 17708896 (+)
G230288 NA non-coding downstream 423363 17782933 ~ 17785805 (+)
LOC118944532 NA other upstream 840881 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 1660130 15672260 ~ 15697397 (+)
G227606 NA other upstream 2112492 15243946 ~ 15244282 (+)
G230916 NA other downstream 935784 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 1210439 18569698 ~ 18588248 (+)
G231438 NA other downstream 1491679 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 1866796 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 2467560 19821356 ~ 19844652 (+)

Expression


Co-expression Network