LOC110511964 (LOC106605506)


Basic Information

Item Value
gene id LOC110511964
gene name LOC106605506
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17462963 ~ 17476591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592620.2
TGCACTGCAGTAGGTGTCAGTATGTTCTTCTTCATCCTTTTGAAAAGTGTATTCTTCTTCATCCTTTTGAAAAGTATCTTCAACCTAGGGGAGAACCAGGAAGTAACTCGTTTGTTTAGATTATTTGCTAGCTTGGTCTTGGCAACTCCAGGAGTTACGTTTTTGCTTGTTTTAGAAAGTGAACGTGTAGCTAGATAGAGTATTTCAACATAGCATCGTAACATGaataaaacagagagaggaaTCATGAGCTCATTGCTTGTTGTTGTGACTGTAACCTGTGTCCTCGTTAGCCGAGCAGAATGTCTCACTAGTACTACGCCAATGCCATTGAATTCTTGCAAAGCCTTCTCAACATGTGACTCATGCATTCAAAACCCAAAGTGCCTGTGGTGCATGACCAACGACACCTGCACAGACTACCCAGTGAGCTACATTCTGCCTCCGCCTGCAGTGTGTAAACTGTCACAGGCACGATGGGGAGTGTGTTGGGTGAACTTCGAGGCCCTGATCATCGCCATGGCAGTGTTAGGCGGGACCATTATCATCAGCATCACagtctgttgctgctgctgctgttgctgcaaGAAACGTCAATCAGGaccagacagagatgaggagaggtttgccaggaagagagaggagatcagacaGCGTGCTGATGAACGgaAGGTGGAGAGGAAGGTGAGGCATGATGACATCCGCAAGAAGTATGGTCTTGTCCCTGACTCTGACCACCCATACAGCAAGTTTGAAAATGAGTAAACCAGAAACCTGTGTGAGAGTGAAGAGAAGTTGTTCAGATGGCTCTACTCTGCTCCATCCTTCTTTGGACTGACTATCATCCTGTCCTGCTGACTGTTTTAGCTTCGAGAGCAGAGACACCCTACTCttgagagacacacaaacacctatATATCAGACCGGTCTATCATCATGATTCATCTAAATCAAACCTTTGCCTATAATTATTAAATGCAGTTTTTATTCATTCATTTTAGGTTTTGAATGAAAACGATTTACAGTTTGAGAAAATGTTACGTTTGTCATACGATTAAGAAGTTTGAGGAAGTCTGTAATATTTCGTTTGCTGTTGGAGACATGGCACTGAGTGGAGCTTCTTAACTTTCTGCACATTCTTTGTATTTTTGTGAAATCTGATTTAAAGAGCCTTTGTTTTAAATTACTGTAATATCTGTGAGTTCGTTTGCGCTTTGTATATATTTCATAAACCAAGAACATAATAATCTATGCTCAATCTGATACATTTCCTAATAAAATGTTTCTTTCAAAGTAAAA

Function

NR:

description
Pituitary tumor-transforming gene 1 protein-interacting protein precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592620.2 True 1299 mRNA 0.41 7 17462963 17476591

Neighbor

gene id symbol gene type direction distance location
LOC110505127 NA coding upstream 103393 17356774 ~ 17359570 (+)
LOC110503758 LOC106605505 coding upstream 121813 17222582 ~ 17341150 (+)
LOC100653482 mrap2 coding upstream 661170 16794699 ~ 16801793 (+)
LOC110511998 LOC106579451 coding upstream 675736 16760501 ~ 16787229 (+)
sim1a LOC106579462 coding upstream 762129 16678893 ~ 16700834 (+)
LOC110503753 LOC106579405 coding downstream 7617 17484208 ~ 17717455 (+)
LOC110511951 LOC106605515 coding downstream 243146 17719737 ~ 17723597 (+)
LOC110511937 LOC106579397 coding downstream 381685 17858276 ~ 17938416 (+)
LOC110511872 LOC106605517 coding downstream 509416 17986007 ~ 18011922 (+)
trnar-acg-3 NA coding downstream 572387 18048978 ~ 18049050 (+)
G229874 NA non-coding upstream 101392 17361350 ~ 17361571 (+)
G229870 NA non-coding upstream 111589 17351161 ~ 17351374 (+)
G229868 NA non-coding upstream 114217 17348369 ~ 17348746 (+)
G229778 NA non-coding upstream 271054 17191699 ~ 17191909 (+)
G230105 NA non-coding downstream 2296 17478887 ~ 17479161 (+)
G230138 NA non-coding downstream 42035 17518626 ~ 17518928 (+)
G230246 NA non-coding downstream 231627 17708218 ~ 17708896 (+)
G230288 NA non-coding downstream 306342 17782933 ~ 17785805 (+)
G230378 NA non-coding downstream 437784 17914375 ~ 17915901 (+)
LOC110503770 LOC106605493 other upstream 815379 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 947070 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 1766319 15672260 ~ 15697397 (+)
G227606 NA other upstream 2218681 15243946 ~ 15244282 (+)
G230916 NA other downstream 818763 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 1093418 18569698 ~ 18588248 (+)
G231438 NA other downstream 1374658 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 1749775 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 2350539 19821356 ~ 19844652 (+)

Expression


Co-expression Network