LOC110511951 (LOC106605515)


Basic Information

Item Value
gene id LOC110511951
gene name LOC106605515
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17719737 ~ 17723597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592617.2
gagacggctcACTGAGACGGCAGGGCGCCTGGAAACAGGTTTCAACAgcgcagagcagagagaggctaTCAGGTTTGTCGGGCAGCTAGAGCAGCAGAAGAACATTGCGGAGTCCGGACCTGTGTGTTGTGTATATTAGACCGGATTTTTTTCTCAAAATTCTGTCAGCGATATTTTTTGATTTTGGGGGACCTTCAACATCTCTGCGCAACGGCGGGAGAAGCAAAAACAACCCAAAGTTACGCAGGAGGGGAGTACATTTACAAGGAAAGAAAAACCCAACAAAGAAAGGGAGCGGGGAAGTAGTTGCGAGCTAGCTGGCGAGCTAGCTAGTTTTTCAAGAAACCGCAAAGAAAGTATGTCTGTGGCCGTGCGTAATGCTTTCGCAATGGATTACAACAGAGTACTGTGTATATTTTTGCAGGTGTTTTTATTGATCAGTTTGGGATCTATAAGGGTAAATGGACAGTATGGCGACCGGGGAATGTCTATTCCGGAGCACGGCTTTTGCCAACCGATTTCTATTCCACTTTGTACGGACATCGCATACAACGAGACCATCATGCCAAATTTACTAGGACACACATCCCAGGAGGACGCAGGGCTCGAGGTACATCAGTTTTACCCGCTTGTGAAAGTTCAGTGTTCTCCTGATTTAAAGTTTTTCCTCTGCTCCATGTATGCGCCTGTGTGCACGGTGCTTGAGCAGGCGCTTCCCCCGTGCAGGTCACTGTGCGAGAGGGCGAGACAGGGCTGCGAGGCGCTCATGAACAAATTCGGTTTTCAGTGGCCGGAAAGGCTCGTGTGCGAGTCTTTCCCGGTTCACGGAGCGGGCGAGCTGTGCGTCGGGCAGAATATGTCGGGTCAAAGCACACCGGTCAATCCCACCCCCGATGTAACGGAGCCTCCGCACGATACTGGGATTGTAAAAGGACAGTTCAAGTGCCCGGCTTCGCTGAAAGTACCCACTTATTTGAATTACCGTTTTCTCGGTGAGGATGACTGTGGCGCACCGTGCGAGCCAAAGAAATCTAACGGAATGATGTACTTCAGCGAAGAAGAGTTAAAATTCGCCAGGATATGGATAGTAATCTGGTCCGTGTTATGTTGTGCATCCACGTTATTTACCGTTCTAACCTATCTGGTGGACATGAAGCGCTTCAGCTACCCTGAGCGTCCTATTATCTTCCTATCTGGTTGCTACACCATGGTGTCCATTGCCTACATAGCTGGATTTCTCCTTGAGGACAAGGTGGTTTGCAATGACAGGTTTGACAACGACATTAGGACTGTGGTGCAGGGTACCAAAAAGGAGGGTTGTACCATCCTCTTCATGATGTTGTATTTTTTCAGCATGGCCAGCTCCATCTGGTGGGTCATCCTGGCCCTCACCTGGTTCCTGGCAGCAGGGATGAAGTGGGGTCACGAAGCCATCGAGGCCAACTCGCAGTACTTCCACCTGGCGGCGTGGGCTGTGCCCGCTATTAAGACCATCACTATCCTGGCGGTGGGACAGGTGGACGGGGATGTCCTTAGCGGCGTGTGCTTCGTGGGCATCAACAGCGTGGACGCTCTCCGAGGCTTCGTCCTGGCGCCGCTCTTTGTCTACCTCTTCATCGGCACCTCGTTCCTCCTGGCAGGCTTTGTGTCTCTGTTCCGGATCAGAACCATCATGAAGCACGACGGCACCAAGACGGAGAAGCTGGAGAAGCTGATGGTGAGGATAGGGATCTTCAGCGTGCTCTACACCGTCCCCGCCACCATCGTCATCGCCTGCTACTTCTACGAGCAGGCCTTCCGGGAGCAGTGGGAGAGGACGTGGATCAGCCAGACGTGTAAGACGTACGCCGTGCCCTGTCCGGCCCACCCACACCCCAACATGAGCCCCGACTTCACCGTCTTCATGATCAAGTACCTCATGACTCTGATCGTGGGGATAACGTCCGGGTTCTGGATCTGGTCTGGGAAGACCCTCAACTCCTGGAAGAGGTTTTATACGAGACTGGCTAACAACAACCAGGGAGAGACCACAGTGTGAATGGTCTGAGTGGGGTGAGACCTCTGGATGTACTTTAGCCTATGATGGGTGTCCCCCACATAAATAAAAAACTGTTTATTTACAGACTGAATGAATGATAATCGTTTTTGGACTTAATTGCCATGCAGAGACACTCATTGGGACATGATGTTTCTATTGTACATAAAACATTTTGTGAGATTTTTGTaagtatatatttgtatttaaagATCAAAattctctttttttgttgtttcccTCTATTAAAACCAACATTTATTTGACACACTTTGGGCATAATGAAAATGGACCTTGGTGATAAAGAGCCAGCTGACTGAGCATTTAGCATTAAGGATGTGGTTGTCTTAGGACCTGAGTTGGCTTGGTCACTGTTGGGAGAGGGTTGTAGCTGTCTTTGATCAGTAGACTGGCTTGGAACATGGTTTCTATTCTAAGCAGCAGAGTCCTGTGAAAAACAATTGCTTCCTCGTGGGTCCTTATCCCCCATTATACTGTTGTTCTTTCTGTCCAACTGTTCTCTTCTATTCAACATATTTCCAATGCCTAAATGCCTGTCATTTGAAGGTTAAAAATACAATCAACATGTATTTTAAAACGAGGTATAGGTTTGGGACTATGTGTTCAACATATTTCTAAATGCCTTGGATTTGACAGGTTAAAAATACAATCAGCATTTTTAAAACAAGAAAGTAGGTAAAGGTTTGGGATTGTGTGCACATGTACTGTGTAGCCTACATGACATGAATCCTCCAAATACACATGTTTTCATAACCTCCAGTACTTTAAGCCAGAATGAGAACATTTAGACCCAAATTTAGCCCAAATACTTTCACCAAAGTTAAAAGCCGTCTTTTGGTGATTACAACAAAATATTTGAAAAGAATGAAAGTAAACAGgatcttttcaacattttgtttatGTGTTTCAGACATCCTTGCTGCCTATTAACACAGAACAGACACACGTTGTTTGTGCCTTTTGTTGACCTATTTGAGCACTTTGAGGAGAattactagcctggtcccagatctgtttgtgttgtcttgccaacCCCGAAGGACCATAGGAGTAGGCAGGACAGCACAATCGCGTCTTGGACCAGGCTAGGGGAATATAGAATGCTGGACAGAGACAGCTCAGACTCAGAGGTGGGCTATGTAACACATCAGCTGCACCCCCTAATGTtttctcacagacagacagctgaaaTATCGATCCTTCATTGATGAACAAGCTGAAATACGTAGTAGCCTACTCTACAGCCGGCTGTATAATTGGCTGATAAGAACTGaaaacaaattaataattgaaGGAGATAGGACAGTGTGTTTTGTAATTTTCAGACCTACAGGTAATCAGAGTCAGTAAATGAATATTCCCCACAAGGTATTGTTGGCAAAATGtggccgttttttttttttttttacaattggcCCAGGTGGCAGCTTGAAGCAGTCCCCTTTCACCCCTGAGTAATTTATCTCCTGGTTAagtgtgagcttgtgtgtgtgtgtgtgtgtgtgtgtgggtgctaaCCATGCAGGATGAGCAGCTGACTTTAGGCTTTATAAAGGAAGACACCGTGATCTGTCCCCCACCTCACGCTTCTTCTGTTATGTTCTTGTCAAATGCATGACAGTTATTTTACCCTAAATGCATGGATGGCTCTCTATTAAACAACATGTTCATACCTTTGACATCTATTATGTTTAATTCTGGTATTCTGCATTTGTTTGTTATTAAAAACATTATATTTATAGAAACATTTCTTTATATCCACACTGATTACTTTAAAGAATAAAAAATCCAACCTTTGCACCAAC

Function

NR:

description
frizzled-1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02432 FZD1_7, fz; frizzled 1/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592617.2 True 3861 mRNA 0.46 1 17719737 17723597

Neighbor

gene id symbol gene type direction distance location
LOC110503753 LOC106579405 coding upstream 2282 17484208 ~ 17717455 (+)
LOC110511964 LOC106605506 coding upstream 243146 17462963 ~ 17476591 (+)
LOC110505127 NA coding upstream 360167 17356774 ~ 17359570 (+)
LOC110503758 LOC106605505 coding upstream 378587 17222582 ~ 17341150 (+)
LOC100653482 mrap2 coding upstream 917944 16794699 ~ 16801793 (+)
LOC110511937 LOC106579397 coding downstream 134679 17858276 ~ 17938416 (+)
LOC110511872 LOC106605517 coding downstream 262410 17986007 ~ 18011922 (+)
trnar-acg-3 NA coding downstream 325381 18048978 ~ 18049050 (+)
LOC110511835 LOC106579338 coding downstream 437056 18160653 ~ 18163990 (+)
LOC118944496 LOC106579030 coding downstream 451836 18175433 ~ 18178854 (+)
G230246 NA non-coding upstream 10841 17708218 ~ 17708896 (+)
G230138 NA non-coding upstream 200809 17518626 ~ 17518928 (+)
G230105 NA non-coding upstream 240576 17478887 ~ 17479161 (+)
G229874 NA non-coding upstream 358166 17361350 ~ 17361571 (+)
G229870 NA non-coding upstream 368363 17351161 ~ 17351374 (+)
G230288 NA non-coding downstream 59336 17782933 ~ 17785805 (+)
G230378 NA non-coding downstream 190778 17914375 ~ 17915901 (+)
G230381 NA non-coding downstream 193334 17916931 ~ 17917402 (+)
G230312 NA non-coding downstream 216937 17940534 ~ 17942259 (+)
LOC110503770 LOC106605493 other upstream 1072153 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 1203844 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2023093 15672260 ~ 15697397 (+)
G227606 NA other upstream 2475455 15243946 ~ 15244282 (+)
G230916 NA other downstream 571757 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 846412 18569698 ~ 18588248 (+)
G231438 NA other downstream 1127652 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 1502769 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 2103533 19821356 ~ 19844652 (+)

Expression


Co-expression Network