LOC110511872 (LOC106605517)


Basic Information

Item Value
gene id LOC110511872
gene name LOC106605517
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17986007 ~ 18011922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970582.1
tttaggggcctattgtcacaccctgatctgtttcacctgtctttgtgattgtctccacccacctccaggtgtcagcTGTTTTCCTCATTAGTCCCTGGGTACTTAATTCCTGTGTTCCCTGCTTGTCTGTTGCAGGTTCGTCAAGTCAAGCTGGGTGTTATTCCGTTCGCCTGCTTTTTCCTTCGCTCtgtttttgctagtcctcccggttgtGACCCTTGCCTGTCTGGATTCTGAACCCACCTGCATCAGTGGATGCATGGTGGCAAGGCGAGAGGGGGTTTCAGGGAAATCTGCAGATAGACACAAGGCCAGCGAGGACATACCCCTGGAGGACATTGTCTCCATTCTACTTTCTTTTGGTTCTATCTTTCATCCTTTATTTGTACTGTATCGTCACTGTGTGTATATTCACACATTTTTTTCgctgtctctcatctctcacaGTTCTTTTTTTCCTTTGCTTTTTAATTTAAATGCAATAAAACTGTAATGGAAATGTCCCTTTTTAGGTAGAATAATGTGCATTAACTTCTTACTGATTGACTTCTTACAGAAAACAGCTATTTGAATCATTGATACCTTAACACTGGTTGTGCTGTTTTTGCACGTGTCTCCAGTACTATATTTCAAGTTGTATGAACagtaaaaaggaaaataaatacattatttccaGCACTGAATCTTGTACTGTACTTGTAAATCGCATTGTACAAAAGCAAACACATGCTATCTGAAGCCTACCCTAATGAATATAAAAGGTATTGGTGATGGTCCACTATCTCTATGACAGGCTTATAAAGCCTTGTTTTTAAGAAGAGCTGGGAAAATCAAACATTCACCTGGGTTATGTGAACTCTCTAGCCTATGCCTACCTATTGAAACATTAGGCCCTCCCTCTCAAGTAGGGGTACCTCATTAGAATGGGCAAGCGTTCTATAAACTCCATGCTATTTCTTCAACCATTGCAAATGTGTCTGACTCGAACAGCCTCCTGTTGACACACTTTCCCTGTTTCCCATAGGACGCTGTCATTGGATTTGTTCTATTATCCAGACAGGAGTGCCATCCCTACTCCCGGTACTTCAGACTTAGGCTTGCTGACTGTCAAGGTTGTCCACCGGCACCGCACTGCCACCGACTCGACCGGACCTGAACTTGATTGTGTGCTCAGGACTCAACGATGGGGAAGGACGCCACAAGAGCAGAGTGGGACAATCCCATGCAATTTGTCCTGGCGTGTGTATCATACGCGGTTGGACTGGGAAATGTGTGGCGATTTCCATACTTGTGTCAAATGCATGGCGGGGGTGGGTTCCTGATCCCATACCTGCTTATGCTGGTCCTGTTGGGGGTACCCCTGTTCTACATGGAGTTAGCCATTGGCCAGAAGATGCGTCTGGGCAGCATTGGAGCATGGAGAGCTATTAACCCCTATCTGGGAGGAGTGGGTCTGGCCAGTGTTGTGACCTCCATGTACCTATGCCTCTATTACAATGTCATCAATGCATGGAGTTTCTGGTACCTCTTTCATTCATTCCAGTCGGTCCTGCCATGGGCAGAGTGCCCGGTTAACAGCAACCTGACCGGCCCTGTGGAGGAGTGTGAGCGGGCCACGCCCACCCAGTACTTCTTCTACAGAGAGACCCTGGACATCTCCGGGTCCATTGAGGAGAACGGAGGGATTCACATGGGACAGGCACTCTGCCTCCTGCTGGCCTGGATGATTGTCTACCTGTTTATCGTCAAGGGGGTCAAGTCCACCGGGAAGGTGGTGTACTTCACAGCCACATTCCCCTACCTGGTCCTCATCATCTACCTCATCCGTGGGGTCACCCTTCACGGAGCCATCAACGGTGTAAAGTACATGTTCACGCCCAAGATGGAACAGCTGGCTAACCCCACTACATGGATCAATGCGGCCACTCAGATCTTCTTCTCTCTGGGCCTGGGCTTTGGATCCCTCATCGCCTTTGCCAGCTACAACCAGTACAACAACAACTTTGAGAAGCAGGCCATCGTCGTGTCCACGGTCAACAGTAGCACCTCCATCTTCGCCAGTATCGTCACCTTCTCCATCTATGGCTTTAAGGCCACCTTCAACTACGAGAGCTGCCTGGAGAGGGTGCGACTGCTGCTCCTGAACACCTTTGATCTGGCAGAGGACACCATCAGTCTGGAGAATGTCAACCACTGGATCGCTGAGCTGAACAGGACACACACGGAACAGTTTGCCAGTCTGGGAGGTAGGCTGGAGACCTGTGACCTAGAGGCTGAACTAGACACGgcTGTTGAGGGTACAGGCCTGGCCTTCATAGTGTACAGTGAGGCCATTAAGAACATGCCCGTGTCTCAGCTGTGGTCGGTGCTCTACTTCatcatgctgctgctgctgggcaTGGGCAGTATGCTGGGCAACGTCATCGCCGTCATCACCCCCCTCAGTGACTTGAAGTTCATCAGCCGCTACATGAGCACCAAAACACTCAAtgGTCTGGTGTGTCTATTCTGCCTGCTGCTTGGCCTGGGCTTCACCACCCGTTCTGGGAACTACTGGTTCACCATGTTCAACGACTATGGAGCCACCTTCTCTCTGCTCTTCATCGTCCTCATTGAAGTTATCACCGTCTGCTACATATATGGCatcaaaagGTTTGAGAAGGATGTAGAAGACATGTTAGGTCATCGTCTTAACTGCTACTGGAAGATCATGTTGGCAGGAGTCAGTCCCATCCTCCTCATTGCCCTATTCATCTTCTACATCGTCAACTACATCCAGGGAGGAACGCCCACATACCAGGCCTGGAACAAAGAACTGGGGAAGTCTGTGGTGACGGAGTATCCTCCCTACGCCCAAGCCTTCATCGGCCTCCTCCTAGCCTCCTCTGTCTGCTGTATCCCTTTGACGGCCCTCTACACCTACTGTAAGAAGAGGAACCTGGCCAGTGGGAAGAGAGAGCGCACTGTCAGCACTGTGTCATTGTAAAGACCGACGTATTGgttgacagacagagtgacacaAGGCAGAGCTGCTACATTACGGCTCTGAGACTGACTGGACCCTCTAGTTATAGGATCGACTGATCGACAGCCCACCGTCCGTATCATGGCTGTCTTAACAGAACAGTACCTCACTCTCCTCGTGCAGTGGTTCATGCCACACCACAAACCAAAGGCCCTCTTTCTCCGCCCGGGGCAGGCTGGCTCTGCcgctgtgctgctggtggacagACCGCCAGATCTGTACCAAGCATTAGCCCTAGTTGTCCTTTGGCATCTAACACTTACTGGGTGATAATAATGaacttttgtattttgtagttgtGGTTCTGAGCAGGGCTTAGAACTACATCCAAAATATTTCAGAAGTGAAAAACGAACAAATAATCTTGTGAATGGTTTATTGCattgtttaaaggcccagtgcagtaaaaaaaaataatgatttcctgtgttttgtaCATATTTCCaggctatgaggttggaataataaagTGAAATTGGGAACATTATTATAAtccccttttagtgtaagagctgtttggtgggatggagcgtggtaaattagttaatagaccaataagaaagagatccAAACCTCTGCatataacagctagttttccatTTTCCCTTCCCCACTCAGACCTCTACAAGACAGTCCTAGCAACATTTTTGCTTGAGAAATAGCTCTTTGCTAAGAAGGTATTTtggtttctttttgaccattctaaatgaaaacaatcacagtaaggtactta

Function

NR:

description
sodium- and chloride-dependent transporter XTRP3-like

GO: NA

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970582.1 True 3758 mRNA 0.48 11 17986007 18011922

Neighbor

gene id symbol gene type direction distance location
LOC110511937 LOC106579397 coding upstream 48577 17858276 ~ 17938416 (+)
LOC110511951 LOC106605515 coding upstream 262410 17719737 ~ 17723597 (+)
LOC110503753 LOC106579405 coding upstream 268552 17484208 ~ 17717455 (+)
LOC110511964 LOC106605506 coding upstream 509416 17462963 ~ 17476591 (+)
LOC110505127 NA coding upstream 626437 17356774 ~ 17359570 (+)
trnar-acg-3 NA coding downstream 37056 18048978 ~ 18049050 (+)
LOC110511835 LOC106579338 coding downstream 148731 18160653 ~ 18163990 (+)
LOC118944496 LOC106579030 coding downstream 163511 18175433 ~ 18178854 (+)
LOC110511795 rwdd1 coding downstream 176691 18188613 ~ 18197679 (+)
LOC110511763 LOC106605526 coding downstream 207677 18219599 ~ 18230637 (+)
G230402 NA non-coding upstream 21157 17964606 ~ 17964850 (+)
G230401 NA non-coding upstream 21629 17963972 ~ 17964378 (+)
G230312 NA non-coding upstream 43748 17940534 ~ 17942259 (+)
G230381 NA non-coding upstream 68605 17916931 ~ 17917402 (+)
G230413 NA non-coding downstream 195 18012117 ~ 18012409 (+)
G230414 NA non-coding downstream 2588 18014510 ~ 18015258 (+)
G230804 NA non-coding downstream 111007 18122929 ~ 18123734 (+)
G230820 lars2 non-coding downstream 133699 18145621 ~ 18148461 (+)
G230929 NA non-coding downstream 148324 18160246 ~ 18160484 (+)
LOC100653482 mrap2 other upstream 1187075 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1338423 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 1470114 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2289363 15672260 ~ 15697397 (+)
G227606 NA other upstream 2741725 15243946 ~ 15244282 (+)
G230916 NA other downstream 283432 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 558087 18569698 ~ 18588248 (+)
G231438 NA other downstream 839327 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 1214444 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1815208 19821356 ~ 19844652 (+)

Expression


Co-expression Network