LOC110503747 (lars2)


Basic Information

Item Value
gene id LOC110503747
gene name lars2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18093704 ~ 18154474 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503747
ATGCCGCCACTTCTCAGCACGGCTGACATGGACGTGAATCACATGGCCATCCCCCAAAAGGTAACAGGCATGCAGATGGCAGCGTACAATGTGTCTCTCTGCCCGCGTGACAGTGGCCTGTTCAGACACCAGACGCAGGGTGGAGTGCTGGTGGCACCCCTGTATCATGGAGCAGTGGTAGAAGGATACGCTGGAGGAGGTGCTAAACCCAATGGATGCTATGGACTCCCAGCAGAGAACGCTACCATCGAGAGAGGCCTTGACCCGAAAGAATGGACGAAGAGTAATATCCAGTCCATGCGGGAGCAGCTCGACAGCCTAGGGCTCTGCTTTAATTGGGACAAGGAGGTGACCACCTGCCTGCCAGACTATTACAGGTGGACCCAGTAGCTGTTCGTCAAGCTCGGCCTATCAGAAAGAGgCGGTGGTGAACTGGGACCCTGTGGACCAGACGGTGTTGGCTGATGAGCAGGTGGATGACAGTGGATGCTCCTGGAGGTCTGGAGCTCTGGTGGAGCAGAAATTACTCAAGCAGTGGTTCATTAAGACCACCAACTACGCcaagcccctccTGGACGCCCTGGCGGAGCTGCCAGAGTGTTACGGGGTCAAGGCCATGCAGGCCAACTGGATTGGAGACTGCACCGGCTGCTACTTCAACTTCCACCTCAAGGTGAATGGGGAGGAGACGGGGGAGACTCTTGCAGGCTACACCTCCAGCCCAGAGGCAGTGTTTGGGGCTGCCTACCTGTCCATTGTCCCCTCCCACAGACTGCTGCATGGTACCAGCCCAGTCCGCTCAGCTCTGGAGAGagtcctgcagacaggcagagACTGCCTGACAGAGGTCACAGCTCACAACCTATTTACCAGTCAGGAACTTCCCCTGGTGATCTCCAGCAAGCAGGAGTTTGACGGTCATCTAGACACTGTCATCGGTATCGCCGACAGGAGTGTAGAGGATGCTTCTGTGGCCAGGGCTCTGGGTCTGAGCTGGAGCCCAGTCCTGAAGAGCCAGAAGGATGGAGGACACACACTGCTCAACTCTGGACACATagcaacacacactTTCACAGGCCTCAGCAGGGAGGAGGCATTTGACTCCATTACCCAGAAGGCCAGAGAGAAAAGTGGGTGGCCACCTGACCAGCACCAAGCTCAGGGATTGGCTGATTTCCCGGCAGCGGTACTGGGGCATGCCCATCCCCATGGTGCATTGTGGGTCTTGTGGTCCTGTGGCGGCCCCTGAGGAGCAACTTCCAGTCACCCTCCCCAAACTACTGTCCCTTACGGGGAAGGGGGCATCCCCTCTGGAGCACGCTGATGATTGGATCAGCTGTACCTGTCCCAGGTGTAAAGGGCCGGTCAGAAGGGAGACCGACACCATGGACATGTTTGTGGACTCATCCTGGTACTATTTCAGATACACTGACCCCCACAACCaagacaggCCTTTTGAGCGCTCCCTGTCAGACCACTGGCTTCCTGTGGACGTGTACATTGGGGGGGGAAGGATCATGCTGTTATGCACCTGTACTATGCACGCTTCCTCAGTCACTTCTGTAGGGATCAGGGCCTAGTGGGACACAGGGAGCCTTTCAAGAAGCTGCTGGTGCAGGGCCTCATCAAGGGCCAGACGTTTAGAGCTGCAGACAGAGGACAGTACCTGAAGAGAGACCATATGGACTTCACAGGTGAGGAGCCGGTGCTTGTGGGAAGTAAGGCCGGGCTGCAGGTGACATGGTAGAAGATGTCGAAACACAACGGCCTGGACCCTCAGCAGCAGTATGGCATCGACACTGTCCGTCTTTACATCCTCTACACTGCTCCCCCTGAACAGGTCATCCTCTGGGACGTCAAGAGTCACGTCACAGAGGACTTCCTCCTGAATGCAGCCATCTCTCGACTCATGGGAGTGGACACTCTCTGGCTGAGCCAGGTGAGGAACCCCCTGAGCCCTCTCCTTTCCCGCGGAGGAGACGTGCTGCAGCAGCTCCTCTCCCGCGGAGGAGACGAGCTGCAGCAACCTTGGCCCACCCCAGACCCTCTGTACCTGGAGACCCCTGATACCCTGGAGCTGGTTGTACGGATCAACAACAAGGTGTATGGGACGGTGTTGGTGCCTCAACAGGTGGCCCAGGATACGGAGCAGGTACGGGCGCTGGTTCTGGGGAGCAAGCTGGGACAGCATCTCCTAGGATACCGGACCATCAAGAAGGCCATTCTGTTCCATAGGACCGCCCTCATCAACTTCCTCATAGAGTAGCGACCACtcaatcctggatgctgattggtggACTGTCATGTCAATCAGAAGACCACTGCCACTCACAGACTTAAAGGCGGGGACATCATGTGAATGGAAGGATGAAAGACTAtttgtaaattaaaacaataagTAGTATCAAcagacatttttgtaaaaaaaactacaaaaaaaTATCTTTGTGAATAAAATGATATAT
>TU263979
AAGGCAGGAAAAGGCAACATCCTCTTGCTGATAGCCACAGTCAGGGAATTTGAGGGATGAACATGGACAaaactctctctttatctctccatctctccctcataGACAGAAAAAAGGACTAGAGTAAGTTAATATCCTTCATGGAAGCCCCTGTGGATCCCCCCCACATTAGCGTAAGGAGGCGGTGGGTGGGCAAACCGAAGGACTGTTGTTAATCCTCAATCTGTAGGGAGCTCTTGAAAGCTTTCCTGTAAAGCTCCATAGAGTTTTCAAAAATTATGAATGTCCCTTATTACATGAGGCATGACCATAGATCACTGTGGTGAGATGGTCCGTCAGTGTGGTGAAGTTGTGTGTAGGCTGAGTGTCTGTAAAGTACTATAAAGggctataaaaaataaaatatgattggTGGATTGATTCCTAGTTTGTGATTTGTTGTCTTCCCCTCCATTCAGGGCTGAGCCAGGTGAGGAACCCCCTGAGCCCTCTCCTTTCCCGCGGAGGAGACGTGCTGCAGCAGCCTGGGCCAGATCAACAACAAGGTGTATGGGACGGTGTTGGTGCCTCAACAGGTGGCCCAGGATACGGAGCAGGTACGGGCGCTGGTTCTGGGGAGCAAGCTGGGACAGCATCTCCTAGGATACCGGACCATCAAGAAGGCCATTCTGTTCCATAGGACCGCCCTCATCAACTTCCTCATAGAGTAGCGACCACtcaatcctggatgctgattggtggACTGTCATGTCAATCAGAAGACCACTGCCACTCACAGACTTAAAGGCGGGGACATCATGTGAATGGAAGGATGAAAGACTAtttgtaaattaaaacaataagTAGTATCAAcagac
>TU263980
CTGTTTTTAGGTGCTAAACCCAATGGATGCTATGGACTCCCAGCAGAGAACGCTACCATCGAGAGAGGCCTTGACCCGAAAGAATGGACGAAGAGTAATATCCAGTCCATGCGGGAGCAGCTCGACAGCCTAGGGCTCTGCTTTAATTGGGACAAGGAGGTGACCACCTGCCTGCCAGACTATTACAGGTGGACCCAGTAGCTGTTCGTCAAGCTCGGCCTATCAGAAAGAGgCGGTGGTGAACTGGGACCCTGTGGACCAGACGGTGTTGGCTGATGAGCAGGTGGATGACAGTGGATGCTCCTGGAGGTCTGGAGCTCTGGTGGAGCAGAAATTACTCAAGCAGTGGTTCATTAAGACCACCAACTACGCcaagcccctccTGGACGCCCTGGCGGAGCTGCCAGAGTGTTACGGGGTCAAGGCCATGCAGGCCAACTGGATTGGAGACTGCACCGGCTGCTACTTCAACTTCCACCTCAAGGAGACGGGGGAGACTCTTGCAGGCTACACCTCCAGCCCAGAGGCAGTGTTTGGGGCTGCCTACCTGTCCATTGTCCCCTCCCACAGACTGCTGCATGGTACCAGCCCAGTCCGCTCAGCTCTGGAGAGagtcctgcagacaggcagagGTATCGCCGACAGGAGTGTAGAGGATGCTTCTGTGGCCAGGGCTCTGGGTCTGAGCTGGAGCCCAGTCCTGAAGAGCCAGAAGGATGGAGGACACACACTGCTCAACTCTGGACACATagcaacacacactgtcactctacACAACGTTACCATTCACAGGCCTCAGCAGGGAGGAGGCATTTGACTCCATTACCCAGAAGGCCAGAGAGAAAAGTGGGTGGCCACCTGACCAGCACCAAGCTCAGGGATTGGCTGATTTCCCGGCAGCGGTACTGGGGCATGCCCATCCCCATGGTGCATTGTGGGTCTTGTGGTCCTGTGGCGGCCCCTGAGGAGCAACTTCCAGTCACCCTCCCCAAACTACTGTCCCTTACGGGGAAGGGGGCATCCCCTCTGGAGCACGCTGATGATTGGATCAGCTGTACCTGTCCCAGGTGTAAAGGGCCGGTCAGAAGGGAGACCGACACCATGGACATGTTTGTGGACTCATCCTGGTACTATTTCAGATACACTGACCCCCACAACCaagacaggCCTTTTGAGCGCTCCCTGTCAGACCACTGGCTTCCTGTGGACGTGTACATTGGGGGGGGAAGGATCATGCTGTTATGCACCTGTACTATGCACGCTTCCTCAGTCACTTCTGTAGGGATCAGGGCCTAGTGGGACACAGGGAGCCTTTCAAGAAGCTGCTGGTGCAGGGCCTCATCAAGGGCCAGACGTTTAGAGCTGCAGACAGAGGACAGTACCTGAAGAGAGACCATATGGACTTCACAGGTGAGGAGCCGGTGCTTGTGGGAAGTAAGGCCGGGCTGCAGGTGACATGGTAGAAGATGTCGAAACACAACGGCCTGGACCCTCAGCAGCAGTATGGCATCGACACTGTCCGTCTTTACATCCTCTACACTGCTCCCCCTGAACAGGTCATCCTCTGGGACGTCAAGAAACGTGTTGTCCTGCGTGCTGCAGCACAGTGTGGAGTTTGAGGAGGCTCTGTCCACGCTGTGTGTGATGACCACTCACCTGGTCTCCGAACTCTGGGCAGGGCTGAGCCAGGTGAGGAACCCCCTGAGCCCTCTCCCGCGGAGGAGACGAGCTGCAGCAACCTTGGCCCACCCCAGACCCTCTGTACCTGGAGACCCCTGATACCCTGGAGCTGGTTGTACGGATCAACAACAAGGTGTATGGGACGGTGTTGGTGCCTCAACAGGTGGCCCAGGATACGGAGCAGGTACGGGCGCTGGTTCTGGGGAGCAAGCTGGGACAGCATCTCCTAGGATACCGGACCATCAAGAAGGCCATTCTGTTCCATAGGACCGCCCTCATCAACTTCCTCATAGAGTAGCGACCACtcaatcctggatgctgattggtggACTGTCATGTCAATCAGAAGACCACTGCCACTCACAGACTTAAAGGCGGGGACATCATGTGAATGGAAGGATGAAAGACTAtttgtaaattaaaacaataagTAGTATCAAcagac
>TU263981
aggCGGTGGTGAACTGGGACCCTGTGGACCAGACGGTGTTGGCTGATGAGCAGGTGGATGACAGTGGATGCTCCTGGAGGTCTGGAGCTCTGGTGGAGCAGAAATTACTCAAGCAGTGGTTCATTAAGACCACCAACTACGCcaagcccctccTGGACGCCCTGGCGGAGCTGCCAGAGTGTTACGGGGTCAAGGCCATGCAGGCCAACTGGATTGGAGACTGCACCGGCTGCTACTTCAACTTCCACCTCAAGGAGACGGGGGAGACTCTTGCAGGCTACACCTCCAGCCCAGAGGCAGTGTTTGGGGCTGCCTACCTGTCCATTGTCCCCTCCCACAGACTGCTGCATGGTACCAGCCCAGTCCGCTCAGCTCTGGAGAGagtcctgcagacaggcagagGTATCGCCGACAGGAGTGTAGAGGATGCTTCTGTGGCCAGGGCTCTGGGTCTGAGCTGGAGCCCAGTCCTGAAGAGCCAGAAGGATGGAGGACACACACTGCTCAACTCTGGACACATagcaacacacactgtcactctacACAACGTTACCATTCACAGGCCTCAGCAGGGAGGAGGCATTTGACTCCATTACCCAGAAGGCCAGAGAGAAAAGTGGGTGGCCACCTGACCAGCACCAAGCTCAGGGATTGGCTGATTTCCCGGCAGCGGTACTGGGGCATGCCCATCCCCATGGTGCATTGTGGGTCTTGTGGTCCTGTGGCGGCCCCTGAGGAGCAACTTCCAGTCACCCTCCCCAAACTACTGTCCCTTACGGGGAAGGGGGCATCCCCTCTGGAGCACGCTGATGATTGGATCAGCTGTACCTGTCCCAGGTGTAAAGGGCCGGTCAGAAGGGAGACCGACACCATGGACATGTTTGTGGACTCATCCTGGTACTATTTCAGATACACTGACCCCCACAACCaagacaggCCTTTTGAGCGCTCCCTGTCAGACCACTGGCTTCCTGTGGACGTGTACATTGGGGGGGGAAGGATCATGCTGTTATGCACCTGTACTATGCACGCTTCCTCAGTCACTTCTGTAGGGATCAGGGCCTAGTGGGACACAGGGAGCCTTTCAAGAAGCTGCTGGTGCAGGGCCTCATCAAGGGCCAGACGTTTAGAGCTGCAGACAGAGGACAGTACCTGAAGAGAGACCATATGGACTTCACAGGTGAGGAGCCGGTGCTTGTGGGAAGTAAGGCCGGGCTGCAGGTGACATGGTAGAAGATGTCGAAACACAACGGCCTGGACCCTCAGCAGCAGTATGGCATCGACACTGTCCGTCTTTACATCCTCTACACTGCTCCCCCTGAACAGGTCATCCTCTGGGACGTCAAGAAACGTGTTGTCCTGCGTGCTGCAGCACAGTGTGGAGTTTGAGGAGGCTCTGTCCACGCTGTGTGTGATGACCACTCACCTGGTCTCCGAACTCTGGGCAGGGCTGAGCCAGGTGAGGAACCCCCTGAGCCCTCTCCCGCGGAGGAGACGAGCTGCAGCAACCTTGGCCCACCCCAGACCCTCTGTACCTGGAGACCCCTGATACCCTGGAGCTGGTTGTACGGATCAACAACAAGGTGTATGGGACGGTGTTGGTGCCTCAACAGGTGGCCCAGGATACGGAGCAGGTACGGGCGCTGGTTCTGGGGAGCAAGCTGGGACAGCATCTCCTAGGATACCGGACCATCAAGAAGGCCATTCTGTTCCATAGGACCGCCCTCATCAACTTCCTCATAGAGTAGCGACCACtcaatcctggatgctgattggtggACTGTCATGTCAATCAGAAGACCACTGCCACTCACAGACTTAAAGGCGGGGACATCATGTGAATGGAAGGATGAAAGACTAtttgtaaattaaaacaataagTAGTATCAAcagac

Function

symbol description
lars2 Predicted to enable leucine-tRNA ligase activity. Predicted to be involved in leucyl-tRNA aminoacylation and mitochondrial translation. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in Perrault syndrome. Orthologous to human LARS2 (leucyl-tRNA synthetase 2, mitochondrial).

NR:

description
PREDICTED: probable leucine--tRNA ligase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503747 False 2465 mRNA 0.56 20 18093704 18154474
TU263979 False 857 lncRNA 0.48 2 18093756 18096691
TU263980 False 2125 TUCP 0.56 16 18093756 18131054
TU263981 True 1895 TUCP 0.57 13 18093756 18130086

Neighbor

gene id symbol gene type direction distance location
LOC110511851 LOC106579350 coding downstream 8675 18049746 ~ 18085029 (-)
LOC110511860 LOC106579366 coding downstream 44863 18033343 ~ 18048841 (-)
LOC110505118 LOC106579600 coding downstream 116051 17975160 ~ 17985544 (-)
LOC110511884 cg024 coding downstream 123853 17968009 ~ 17969851 (-)
LOC110511898 LOC106579390 coding downstream 128826 17957248 ~ 17964878 (-)
LOC110511808 LOC106579331 coding upstream 26016 18180490 ~ 18182783 (-)
LOC110511774 LOC106579313 coding upstream 45584 18200058 ~ 18207022 (-)
zufsp cf113 coding upstream 55547 18210021 ~ 18219582 (-)
LOC110511716 LOC106579594 coding upstream 83270 18237744 ~ 18248134 (-)
LOC110511708 LOC106579301 coding upstream 124484 18278958 ~ 18285197 (-)
G230858 NA non-coding downstream 13192 18079293 ~ 18080512 (-)
G230735 NA non-coding downstream 73918 18019141 ~ 18019786 (-)
G230734 NA non-coding downstream 75268 18014482 ~ 18018436 (-)
G230732 NA non-coding downstream 82969 18010521 ~ 18010735 (-)
G230731 NA non-coding downstream 84605 18008723 ~ 18009099 (-)
G231065 NA non-coding upstream 3779 18158253 ~ 18158589 (-)
G231072 NA non-coding upstream 21233 18175707 ~ 18176072 (-)
G231073 NA non-coding upstream 22971 18177445 ~ 18177681 (-)
G231080 LOC106579327 non-coding upstream 39951 18194425 ~ 18197709 (-)
G231081 NA non-coding upstream 43815 18198289 ~ 18199925 (-)
G229707 NA other downstream 1045360 17043792 ~ 17048344 (-)
G229380 LOC106605502 other downstream 1243505 16849972 ~ 16850199 (-)
G229373 LOC100194703 other downstream 1253865 16839389 ~ 16839839 (-)
G228191 LOC106578455 other downstream 2302539 15762029 ~ 15791401 (-)
G231652 rn146 other upstream 445256 18599730 ~ 18601875 (-)
LOC110511176 LOC106579058 other upstream 1004826 19065512 ~ 19282368 (-)
rims2a LOC106579570 other upstream 1387628 19416054 ~ 19652601 (-)
G232980 NA other upstream 1493612 19648086 ~ 19648629 (-)
G233052 LOC106605397 other upstream 1601730 19756204 ~ 19757908 (-)

Expression


Co-expression Network