LOC110511835 (LOC106579338)


Basic Information

Item Value
gene id LOC110511835
gene name LOC106579338
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18160653 ~ 18163990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592565.2
TTCCTCACACacctgagagagcgagagagagagagagagactaccagGGTCCTCGCAGCACACCACAGCCCATCTCTTGCAAAGTAGTGCCCAGTGGCAGTTTGGCAAGAAGCCAGTTACTTTCTTAACCAAATCGAGGGAGGGGGCGCGCACGGTGCGTGTGACGGGCAACTGACGTTCCCAACTGTTCTCTCCGGCAACGGAAGATGCACACTATGGATGTTTGTGTAATCGCTGGAGACGGCAGTTTTCTGCATTTTATTAACGACGGACACGCCTCGTCAGTTGCCTTGCGTCCCCACGGAACATCATGCGAGTAGGAGCAACGCACCCAATGCCATGCTGAGCAACTCCCCGACTTTTCTGCTGGCCCTAACCACGGTAGCTGGACTACTCCAGCGGTGCCACGGCTGGAGCGACGAGGACCTCCTGTTACCCCCCATCAACTCCACCAACAGATTCTTGGCCAACTTGGAGGTAGACGTGCACTACTCGAAGAGATCCGTGGAGGAGAGCGAAGCCTCCTCGTCAGACACTTCGTTACAGCCGTTGCCACAGTGCAACGTCAGCGTGCAGAGACTTTTCCCCACCTCGCTAGTGGCTCGTTGGGACAGCAACTTCGGTTTCCAGTGCGATGTGTTTATATATACCGCCAATAACCATGGAAGGGCTTTTTTCTCTGCTGCTATCAACAGAGCCATCTCACCTGTTCTCATCGAACACCTCGGAGTCACCGGCGGCCAGCAGGAGTTTAGACTGTGTGTTGGATGTGGCATGTCACGATACCGGCGATTCGGCAAGTCAAAGGCTCAGCAGACGGGGGATCCCATCAATTTCTGCTGTGTTGACTTCAGCCTTGACGAACTAAATGGGGACAAAAGTTGGAGATTGAACCGTAAACCCATCGAGTCAACTCTAGTGGCTTGTTTCATGACTCTAGTGATAATAGTGTGGAGTGTTGCTGCCCTCATATGGCCGGTGCCTATTATTGCAGGATTTCTGCCCAACGGAATGGAACAGAGAAGACCGAGATAAAGAATTCTGGAGATAAGCCCCCAAGCCAAGAGGCAAAAAATACTGTAGAATACATATTTCAACGTTTTTTTCACATTCGACCCGTATGAAAGAATGTCCGTTTCCCAATTTTACCGTTTAGAATGAAAGAGTGCTTTTTGGTTTTGGTCTATTTCCTATTTATAGGCCTTCATGGTAAGAAGACCAATAGTTTTAAAGGTGGGCTGTGTTATTGTATTACATTGGCTGTAGAATAGGTGCATATGTAGAGTGTGTTaacaacatttcactgtaaacaGTGGTTGTATGGTTTTACATATTTCTAGGATAATTGCCTATAGGcaagtggtgtagtggtgcccgAAGAATAGGTATACTCTTCATTTTGGCAAAAATGTCCCAAACAGCATGCCCGGCGAAGGAAAGGCGCTCTGTGTGAAAAATTCTATGAGAAACAGTGACATTCATTCTGTATTACCTAAAATGataaatcccatattggtctttcacagtcaggccaacccaagctgtactgtgcaagGAGGCTAATTGCAGGCGTACTATTGAAACAGATAAATTAGGCTGTCAACTAAATCAGAAATTCAAAGGTTTCAGATGTATTTTTTCagattttcactctcaaaatcacacaattggatgttctaagtccaTAAAAATGCTTAAActacatcaggagaccacttttgaggtctgggaaaaatctaaGATAAAACCATTTTTGTGtagttcaaatcaaagtttatttgtcacgtgcgccgaatacaacaggtgtaggtagaccttacagtgaaatgcttacttacagactctaaccaatagtgcgaaagaaaaaggtgtgtgtgtgtaggtaagtaaagaactaaaacaacagtaaatcaaatcaaatcaaattttatttgtcgcatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttctaaaagacatttgaaaataacagtagcaaggctatatacaggcactggttagtcaggctgattgaggtagtatgtacatgtagatatggttaaagtgactatgcatatatgatgaacagagagtagcagtagcataaaagaggggttggcgggtggtgggacacaatgcagatagcccggttgccAATGtccgggagcactggttggtcgggccaattgaggtagtatgtacatgagtgtatagttaaagtgactatgcatataagataaacagagtagcagcagcgtaaaagaggggttacTCTTTAATTCAAGTGTGCAGGCAACTAGCACTATTGTTTTGTTAGTGGTGTTTCTGTAGCACATGAGATGGAGTTTGCAagacaaatggccactggattaatgcaaataatcatgatatcattctgccaggtaggcgtaggctactttgtagctagttaacatttaataGACAAGGTTTTTGgaaaagcctttccatctaccagaagacagTTAGGCCTATCATTAGCATCGCTATAATTTTCCTgttccttaattgtttgaaacctggacattttacttcatattatgaggcagGTCTTACCATTGCATAGAAACATGGAGGTAATATGCGTTCTCCTGTTCTACTGGTTTTCGTTCAACTTTATTTCTTTGTCTAGCAGCCAAATGCATCATCCTATTCATATTAGCAACTGATGAaggttgttgcatctttagatctccctcATATCTAATTTTCTTATGGATATTTTAATCTCCATCCATCAAACCTCTCACATATGctgtgcacattttagagtggtgtTTTCTTgctaattgcattttggaacattcccATGTAGACCTACCGCCGTGTGCCCATTGCAGCatctaaaatgtgaagaaataatagtttatcaacatttaagCTAAACATTAAGAAATATACGCATGCCCACTGAAAAATAAGTGGGTATACGGTGTAAACCTGCGcataccctccactacacacaccactgagGCCTGCTATTTGTTGTGTTTATGTAGAGAGAAATTGCAGTTTTTCTCATGAACTTGAGTTAAAAAGTGTGTTGTAATACATGGTGGGTAGATCTTGTCAAGAATAAATGCATAAATGTCATAGGCCTACCTGAATTTATTTTGGATGTTGTATCAAATATTTTGATGTATTGGCAACCCCTCTCTGATATGGTTTAATATTATTTATAATGTTAgatttatatatataacacaaTTAAAACTAAGCTGATaacatatttgtatttatttgtatgaGATAACATGaattaataaataaatcaaatgtatttgttttataTAA

Function

NR:

description
transmembrane protein 158-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592565.2 True 3338 mRNA 0.42 1 18160653 18163990

Neighbor

gene id symbol gene type direction distance location
trnar-acg-3 NA coding upstream 111603 18048978 ~ 18049050 (+)
LOC110511872 LOC106605517 coding upstream 148731 17986007 ~ 18011922 (+)
LOC110511937 LOC106579397 coding upstream 223223 17858276 ~ 17938416 (+)
LOC110511951 LOC106605515 coding upstream 437056 17719737 ~ 17723597 (+)
LOC110503753 LOC106579405 coding upstream 443198 17484208 ~ 17717455 (+)
LOC118944496 LOC106579030 coding downstream 11443 18175433 ~ 18178854 (+)
LOC110511795 rwdd1 coding downstream 24623 18188613 ~ 18197679 (+)
LOC110511763 LOC106605526 coding downstream 55609 18219599 ~ 18230637 (+)
LOC110511665 LOC106579269 coding downstream 179337 18343327 ~ 18348845 (+)
LOC110511644 hint3 coding downstream 185635 18349625 ~ 18353319 (+)
G230929 NA non-coding upstream 169 18160246 ~ 18160484 (+)
G230820 lars2 non-coding upstream 12192 18145621 ~ 18148461 (+)
G230804 NA non-coding upstream 36919 18122929 ~ 18123734 (+)
G230414 NA non-coding upstream 145395 18014510 ~ 18015258 (+)
G230413 NA non-coding upstream 148244 18012117 ~ 18012409 (+)
G230936 LOC106579331 non-coding downstream 16568 18180558 ~ 18181570 (+)
G230938 NA non-coding downstream 19712 18183702 ~ 18183937 (+)
G230939 NA non-coding downstream 19951 18183941 ~ 18184149 (+)
G230940 NA non-coding downstream 20167 18184157 ~ 18184391 (+)
LOC100653482 mrap2 other upstream 1361721 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1513069 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 1644760 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2464009 15672260 ~ 15697397 (+)
G227606 NA other upstream 2916371 15243946 ~ 15244282 (+)
G230916 NA other downstream 131364 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 406019 18569698 ~ 18588248 (+)
G231438 NA other downstream 687259 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 1062376 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1663140 19821356 ~ 19844652 (+)

Expression


Co-expression Network