LOC118944496 (LOC106579030)


Basic Information

Item Value
gene id LOC118944496
gene name LOC106579030
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18175433 ~ 18178854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964123.1
TGGTTTTGTATTCTAAGTCTCTGTCTATGTTTTGTACAAATTAATATAGTTTTGATAGAGGTATGGTTATGTAAAATACCCATGTGGTATAGAACAAACCTGCCTCCCCAACTGATGCCACTCTTctaccttaattcatcaatcccTTCCCTGGTTGTTGTTCTTTCAGAGGGTGTGACACTGACCCTCACCCCTGACGAGGGCACTACTCTCAACATCAGCCAGAGTTCAGAGTGCAGCAGGAGGTCAAAGTGTACGGTATGCACCGGTACAAGCTTGAAGAAGTCCTGTTCCAGGGCTGGAAGTGATTATGTGGTGCTGCTGACAGACCCCAAAGTTGCTGTGAACATGGAGTTCACCTGCCCCAAACCAGAGGAAGTCTTCACTGTGGAAGTGGTCAGGGAAATAGATTGTACCACAAGGTCCTGTAATGGAGACATCACCCCCATTGAGTCTAGAACCGGAATGCTTCCACTCCAGAACTTCACCTTTATTTGGAACCTGAAGCCCCCGGTTCCATGGGCGTTCCATTTGGACTTCACCCAGATGGGGCTGAGACAGATCCTGCCCTCTGAGAGATGTCCAGACCAGCACACGTATACCCTGCTAGCCCTCCAGAGGACAGGGGAGGCTGCCATCGGGACGTACTACTGTCTCTGGGGCTCAGGTCTTGAACCAGGGCAGGCTCTCTCTGGAGGTCACCGGAAGACGGAAACTGAACCCCACCATGTTCAACACTTCTGTTGGAGAGGAAATCAAATGCGAGTTGGTCAGACAGTGATTTCAGAATACTGAAGTAAAATCACATTGTTTTAATTTCATTAATATAAATGGATTACTTATGTCTGTATGTTTTTAGTGGACCTGGTTAACCTTGTATTTTCTGACACTTCATCAACATATCATTGTCCCTCAGCACTTGCTGTCCTCAAAGTGACTTTACCGGAAGGGACGTCATCTTTGGAGTTGCTCTCTCCAAACTACCCGAATAGTTTCCCTGACGATGACCTGATGGAGTGAAAGTTTGTGGTCCCTCCCAAACACAACGCTACGGTTGTCTTCCTGGGTCAGACCCAGCCGCTGTGCCTGAAGAAGGAGCCGGCCGTGGAGTATCACCATGGTAACGGTGGTTCGCAGTGGTGAAGAAGCTGTCGGACCTCCAGCCGGCCAAACGCCGGGACTCCTTCTCCCTGATCCTAAGGAACTGTGAGATGAACAGGATCGGAGAAGGctccaatgttccaacatctagtggaaagccttcccagaagagtggaggctgatacagtatatcagcaaggggaggaccaactccaaatTAATGCCCAGGATTTTGGAATGAGTTGTTCAGCGAGTGGGTGTCCACATATACTTTTGGCTATAAAGTTACATCTTTAATAAATTGTTTTATATAAAAGTAGCACTGTAACTACAAATATGGTATTCTCCCCCTGatgtacacacagagagatacattgTCACGGTATGCCCAAAGCAAGGAGTACCAACTCTCTGGCCACCCCTAGTTGGCATGTGGGAATGAAGTCCTACTCCACTGTGTCCTGGATCGTCGATGTCCCCTCTAAGCTGGAAGCTCACCTCATGTTCGACAACATCAGCCAGCCCAAGTGCAGCAACCGCCACACGGGCATCAGGTACAACCAGAAGAGGATGGGTACCCCTCTGAGACGTCCTCTCTAGGATTTTtcattctagggagtttttcttggCCACTGTGGTCCTGCTTCTTCCTTGCTTGGTCTTGGGGTCCAGGCCGGATTACTGTAAAGCACTTTATGATGTGCTGTAAATAAATGAATGTGATTTGATCAGGGTGCAGATCCTGGGCTCCCTGGAGGAGATGTACAGCCAGCGGGAGGACGAGGAGGCAGTCAGGAAGATCCCTGTCTCAGAGAGCTTCTACCTCAACATGTCCAACTGTATGCCTGAGAAAGGAGACTTCAGCGTGCTCACACAGATCACACTGCACAAGGACAAGAGTGAGTGACCGACCGTGTGGAGCAGTCATGATAAGCAGTGTTGTTCTATCTCCTCTCAGTGAAAATCTAACGCTCAATGTTTCTCAGCATTTCTCTGATATTTTGTTCAGTCTGGTCTtactacactgagtataccaaacattaggaacacctttctaatattgagttgcacccctccaTTTTCCCCTCAGAACAAACTGAATTCATTGGAGCTTGGACTCGCTCAGTAGGTAGGATTATGCAGCTGCCTACGGCGGCAGATTGACGAGGGTGGCATTTTATGAGCTAAACTGGCCATTTTATGAGTCAAACTGACCAAACAATGACAATTTTTCTCGACCAGTGGCAAATGGGATTTTTAGGTGAGCATTGATGCCGCCCTGtgataagcagtgcccactttgcTTGTCCATTCCCAGTGAGTTTGTCCAGGGTTCTATTGGAGACACATCGCTATGGCTCTGTATCATCATTCCGTCCAAACAATGATCTGACATGAGTCATGTAGCGGATATAGTATATGGTAGAACGAGTATGTGGCCTGTTGTGGAataatcagaatttgttggtaacatatgtaagatgttttacattcatcatatgtttgtaagttacttctcatcaagaatgttatttttgtataatattgtggcagggttgcagttatctgttctatgtcaagactaagttgcatgggccgcagagaggggagaggtcaaagtatcatcatgtgtaaacatatctcttggctccacaatgtctgtgtgccagtcagcgtgtctctgtgatcttgtcaagataggattggttgtatttagaattggttgtatctaaatgacaatttgatatatgcctgttgatatggaggattggtttatggttctggggtttgagtaaggagacaaagctgaacgatttattatgtctatgctgtctgactatgtgtgttctttgctattaaaggatggCAGTTGCAATGCAGAAGGGGCTCTCACGCTGATAATCAGAACTTAAATAGAAAaaattgattagtcacaggaatccgtactaataaagccaatgcaacGGCCTGTTTTACAAACAGTGGGCCTAGTACATGGATGGGAATTCATCAAATTCCATTGGGGGCCACATGGTA
>TU264083
tatctgttctatgtcaagactaagttgcatgggccgcagagaggggagaggtcaaagtatcatcatgtgtaaacatatctcttggctccacaatgtctgtgtgccagtcagcgtgtctctgtgatcttgtcaagataggattggttgtatttagaattggttgtatctaaatgacaatttgatatatgcctgttgatatggaggattggtttatggttctggggtttgagtaaggagacaaagctgaacgatttattatgtctatgctgtctgactatgtgtgttctttgctattaaaggatggCAGTTGCAATGCAGAAGGGGCTCTCACGCTGATAATCAGAACTTAAATAGAAAaaattgattagtcacaggaatccgtactaataaagccaatgcaacGGCCTGTTTTACAAACAGTGGGCCTAGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964123.1 False 3138 mRNA 0.46 2 18175433 18178854
TU264083 True 432 lncRNA 0.41 1 18178381 18178812

Neighbor

gene id symbol gene type direction distance location
LOC110511835 LOC106579338 coding upstream 11443 18160653 ~ 18163990 (+)
trnar-acg-3 NA coding upstream 126383 18048978 ~ 18049050 (+)
LOC110511872 LOC106605517 coding upstream 163511 17986007 ~ 18011922 (+)
LOC110511937 LOC106579397 coding upstream 238003 17858276 ~ 17938416 (+)
LOC110511951 LOC106605515 coding upstream 451836 17719737 ~ 17723597 (+)
LOC110511795 rwdd1 coding downstream 9759 18188613 ~ 18197679 (+)
LOC110511763 LOC106605526 coding downstream 40745 18219599 ~ 18230637 (+)
LOC110511665 LOC106579269 coding downstream 164473 18343327 ~ 18348845 (+)
LOC110511644 hint3 coding downstream 170771 18349625 ~ 18353319 (+)
LOC110511603 LOC106579246 coding downstream 180224 18359078 ~ 18386819 (+)
G230929 NA non-coding upstream 14949 18160246 ~ 18160484 (+)
G230820 lars2 non-coding upstream 26972 18145621 ~ 18148461 (+)
G230804 NA non-coding upstream 51699 18122929 ~ 18123734 (+)
G230414 NA non-coding upstream 160175 18014510 ~ 18015258 (+)
G230413 NA non-coding upstream 163024 18012117 ~ 18012409 (+)
G230936 LOC106579331 non-coding downstream 1704 18180558 ~ 18181570 (+)
G230938 NA non-coding downstream 4848 18183702 ~ 18183937 (+)
G230939 NA non-coding downstream 5087 18183941 ~ 18184149 (+)
G230940 NA non-coding downstream 5303 18184157 ~ 18184391 (+)
G230946 NA non-coding downstream 16572 18195426 ~ 18195779 (+)
LOC100653482 mrap2 other upstream 1376501 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1527849 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 1659540 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2478789 15672260 ~ 15697397 (+)
G227606 NA other upstream 2931151 15243946 ~ 15244282 (+)
G230916 NA other downstream 116500 18295354 ~ 18296105 (+)
LOC110511593 LOC106579240 other downstream 391155 18569698 ~ 18588248 (+)
G231438 NA other downstream 672395 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 1047512 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1648276 19821356 ~ 19844652 (+)

Expression


Co-expression Network