LOC110511665 (LOC106579269)


Basic Information

Item Value
gene id LOC110511665
gene name LOC106579269
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18343327 ~ 18348845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592485.2
AAAGCACTGAGCCTCCAGACAATCCGCTCTAATTTTCACCATATCATCCTCTCTTCTTCACCTCCTTTTCcatctcctgctcctcctttctACCCCAGCTACTATTCAGCATGGGAGTAAATTACAGCTTTGAAGAGGTTGAACTGATCCAAACCAAGGACAACAAAACGAGACACCACAAGCATCCCTGCCGTCTGGTAGTGGAGAAATACGAGCTagctgtgctgtgctgctgtgctgccaTAAACTGGGAGATTATCACAGGGAACGATTCAGTAATGCCTCGATGGAGCGTGTGCAGCTCAGAGGAGGGTAACCGCTCTGAGGGCGAGGAGCCTGAGGACATACTTCCTGTTCTCCGAAACCACAGCCAGCTCCTCAACGACCAACACATCGAGAGTCTAGCCAATCACATACCAGCAAGGACACAGGGGTATCCATGGAACCTGGTCTACAGCACAGCCATTCATGGCACCAGCCTGAAGACTCTGTACAGGCAAATGGCCCACATCGACAGTCCTGTGCTTCTGGTCATCAAAGACATGGAAAAAAAGgtgtttggtgccttctcctcccatcccttcAGAGTGAGTGACTGTTGCTACGGAACAGGAGAGACTTTTGTCTACAGCTTCGACCCTGCATTTAAGGCCTACAGGTGGAGTGGTGAGAACTCTTACTTCATCAGGGGCCATATGGACTCTCTACAGATTGGTGGAGGAGGGGGGCTTTTTGGCCTGTGGCTGGATGCTGATCTGTACTACGGTGCCAGCTTCCCATGTCACACCTTCAACAACCAGCCCCTGTCCACCCAGCAAGACTTCACAGTGCAGGACCTGGAGGTCTGGACTGTCCAGTAAACAGAGCGAGACGCTGAGAGACTCAGAAgcggaaaagagaaagagaaaaaagccAGAGCCATGTCTATCTATGGTTTACAACATGGCTTTACTTGTGTTCAGTGAGGTTTAGCCTGTGTTCAAGCTGTTAAAGTACAGTAAGCTTAATATAGTAAGCTTGGTTTGtccaatgactgtatatatgaatggacaaCGCCATCGATCACGTGACACCAGTCATTCCTATGTGAAAACTCAATAGTGCATTTGAAGCCAAGGAAGTCCATTAAGATGGCGTCTCATGTGGGAGATTTACGTAGGCATTACATGCtagtttgagctactccaggatGTGACGTTGCAGGCTAGTTCAGTGCTGCCCCATCTCATTGAGTATTTCATGTTAAAGGCAGAATGGGGCATGCTGCCATTAGCTACTAAATTATGATAGTAACTTCTTCTGTGTGCGATTTTAAAATAATCGGTTTAAGCACATACATCTGGGGTAATAagacatttttgtttttatttgttattatatTTATACGAAGATTGACCATGAAGATTACCATCTTCCCATTCACTGTACTGGGGATTCTGTGTTTGGCAAATAATGCCTGCAGTACTGTGGTTGGCCTTGAATGAGAGGGGGCAGTCATTCACCCCTGGGTTTGTCACGTGTAAAACCTGGTCTAATGACTTTTAGGCTGGTTTTACCTGTGTTTTACCAGCGCGTAACCTATTATACCAGCATTAACTCAGGTTGTATCTGTGTTTTGCCTGGTTAACTGAGGATTGTATGGTGAGAGATAGACAGGCTGTTTATACAGTGTCCTACTGTTTGCTGCTCAATACCTGCTACTGAACAAGCTCTGTCCAATACGAGCATTACAACTGGTTCTAGACATCTAAGCTGTAAACCCTCCATCAATCCTTTGTTATGGACAGCATTTACAAACCAAAGCCCATTTTAGAGTAATATCCTATTTTCATTACAATTTCCTCATAAGCTTTAAACTTTATAGAGGCTAAGATGAACACACTACTGTACTACCCaactattttgtatttatttctgtgtctgtgttacaAGGGTACAACATCAGATGCCCCGTAGGGattcctcacacacacaacactcagGTCTAGAAACAGCCACGGCAGAGTACTGTCTCTTAGAGCTGCTAAAAGTGGCCTCTAATGGTTTGTACTAAAGGTATGGGTTTAAATCCATGTTAAATGTTTTCTTACATTTCTAAAAGAGAATAATGACATTTGTTTAAAAGAAAGAAACAGGATATAAGATGGACCAATTGTTTTAGTTTGGCGTCTTTTTCACATTCCTTTGTTTTTTATATTTGCTATAAAAAAAAGATACAGATATATTTAAAGAAATGTTATCCAGTgaagtattttgttttgtttttctgtaTGTGTGCTGTACAGTGCTGGCACTGTTAATGGCTCCTTATTAAAATTCTGCATTTCCAggtgacaaaaaa
>XM_021592488.2
AGCATTTGATGGTTGGGTATAGGTTATCAGTTCACACTCTTGCCTGTGCCTGTGGTACATACAGTATCATATACTGAGGCAACTGTGTTACATTATTAGTATACATGAGTTGTGTTTGGGAGGAATATTAGTAGACATGAGACCAATGCAGGAGAACATCAAGGTGCTTTACTTTGCAAACAAATGTCTGGAGCCATATGTAGTGATTATCACAGGGAACGATTCAGTAATGCCTCGATGGAGCGTGTGCAGCTCAGAGGAGGGTAACCGCTCTGAGGGCGAGGAGCCTGAGGACATACTTCCTGTTCTCCGAAACCACAGCCAGCTCCTCAACGACCAACACATCGAGAGTCTAGCCAATCACATACCAGCAAGGACACAGGGGTATCCATGGAACCTGGTCTACAGCACAGCCATTCATGGCACCAGCCTGAAGACTCTGTACAGGCAAATGGCCCACATCGACAGTCCTGTGCTTCTGGTCATCAAAGACATGGAAAAAAAGgtgtttggtgccttctcctcccatcccttcAGAGTGAGTGACTGTTGCTACGGAACAGGAGAGACTTTTGTCTACAGCTTCGACCCTGCATTTAAGGCCTACAGGTGGAGTGGTGAGAACTCTTACTTCATCAGGGGCCATATGGACTCTCTACAGATTGGTGGAGGAGGGGGGCTTTTTGGCCTGTGGCTGGATGCTGATCTGTACTACGGTGCCAGCTTCCCATGTCACACCTTCAACAACCAGCCCCTGTCCACCCAGCAAGACTTCACAGTGCAGGACCTGGAGGTCTGGACTGTCCAGTAAACAGAGCGAGACGCTGAGAGACTCAGAAgcggaaaagagaaagagaaaaaagccAGAGCCATGTCTATCTATGGTTTACAACATGGCTTTACTTGTGTTCAGTGAGGTTTAGCCTGTGTTCAAGCTGTTAAAGTACAGTAAGCTTAATATAGTAAGCTTGGTTTGtccaatgactgtatatatgaatggacaaCGCCATCGATCACGTGACACCAGTCATTCCTATGTGAAAACTCAATAGTGCATTTGAAGCCAAGGAAGTCCATTAAGATGGCGTCTCATGTGGGAGATTTACGTAGGCATTACATGCtagtttgagctactccaggatGTGACGTTGCAGGCTAGTTCAGTGCTGCCCCATCTCATTGAGTATTTCATGTTAAAGGCAGAATGGGGCATGCTGCCATTAGCTACTAAATTATGATAGTAACTTCTTCTGTGTGCGATTTTAAAATAATCGGTTTAAGCACATACATCTGGGGTAATAagacatttttgtttttatttgttattatatTTATACGAAGATTGACCATGAAGATTACCATCTTCCCATTCACTGTACTGGGGATTCTGTGTTTGGCAAATAATGCCTGCAGTACTGTGGTTGGCCTTGAATGAGAGGGGGCAGTCATTCACCCCTGGGTTTGTCACGTGTAAAACCTGGTCTAATGACTTTTAGGCTGGTTTTACCTGTGTTTTACCAGCGCGTAACCTATTATACCAGCATTAACTCAGGTTGTATCTGTGTTTTGCCTGGTTAACTGAGGATTGTATGGTGAGAGATAGACAGGCTGTTTATACAGTGTCCTACTGTTTGCTGCTCAATACCTGCTACTGAACAAGCTCTGTCCAATACGAGCATTACAACTGGTTCTAGACATCTAAGCTGTAAACCCTCCATCAATCCTTTGTTATGGACAGCATTTACAAACCAAAGCCCATTTTAGAGTAATATCCTATTTTCATTACAATTTCCTCATAAGCTTTAAACTTTATAGAGGCTAAGATGAACACACTACTGTACTACCCaactattttgtatttatttctgtgtctgtgttacaAGGGTACAACATCAGATGCCCCGTAGGGattcctcacacacacaacactcagGTCTAGAAACAGCCACGGCAGAGTACTGTCTCTTAGAGCTGCTAAAAGTGGCCTCTAATGGTTTGTACTAAAGGTATGGGTTTAAATCCATGTTAAATGTTTTCTTACATTTCTAAAAGAGAATAATGACATTTGTTTAAAAGAAAGAAACAGGATATAAGATGGACCAATTGTTTTAGTTTGGCGTCTTTTTCACATTCCTTTGTTTTTTATATTTGCTATAAAAAAAAGATACAGATATATTTAAAGAAATGTTATCCAGTgaagtattttgttttgtttttctgtaTGTGTGCTGTACAGTGCTGGCACTGTTAATGGCTCCTTATTAAAATTCTGCATTTCCAggtgacaaaaaa

Function

NR:

description
nuclear receptor coactivator 7-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592485.2 False 2341 mRNA 0.43 7 18343327 18348845
XM_021592488.2 True 2292 mRNA 0.42 6 18344723 18348845

Neighbor

gene id symbol gene type direction distance location
LOC110511763 LOC106605526 coding upstream 112690 18219599 ~ 18230637 (+)
LOC110511795 rwdd1 coding upstream 145648 18188613 ~ 18197679 (+)
LOC118944496 LOC106579030 coding upstream 164473 18175433 ~ 18178854 (+)
LOC110511835 LOC106579338 coding upstream 179337 18160653 ~ 18163990 (+)
trnar-acg-3 NA coding upstream 294277 18048978 ~ 18049050 (+)
LOC110511644 hint3 coding downstream 780 18349625 ~ 18353319 (+)
LOC110511603 LOC106579246 coding downstream 10233 18359078 ~ 18386819 (+)
LOC110511593 LOC106579240 coding downstream 220853 18569698 ~ 18588248 (+)
LOC110511568 rn146 coding downstream 239854 18588699 ~ 18601905 (+)
LOC110511366 LOC106605529 coding downstream 338920 18687765 ~ 18692685 (+)
G230997 NA non-coding upstream 37613 18305474 ~ 18305714 (+)
G230912 NA non-coding upstream 38267 18298318 ~ 18305060 (+)
G230995 NA non-coding upstream 45081 18297322 ~ 18298246 (+)
G230994 NA non-coding upstream 46049 18296975 ~ 18297278 (+)
G230926 NA non-coding upstream 50851 18292245 ~ 18292476 (+)
G231277 NA non-coding downstream 180218 18529063 ~ 18529365 (+)
G231279 NA non-coding downstream 188785 18537630 ~ 18537829 (+)
G231288 NA non-coding downstream 199683 18548528 ~ 18548758 (+)
G231363 NA non-coding downstream 332861 18681706 ~ 18682023 (+)
G230916 NA other upstream 47222 18295354 ~ 18296105 (+)
LOC100653482 mrap2 other upstream 1544395 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1695743 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 1827434 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2646683 15672260 ~ 15697397 (+)
G231438 NA other downstream 502404 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 877521 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1478285 19821356 ~ 19844652 (+)
G233521 LOC106579937 other downstream 2209931 20558776 ~ 20565712 (+)

Expression


Co-expression Network