LOC110511603 (LOC106579246)


Basic Information

Item Value
gene id LOC110511603
gene name LOC106579246
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18359078 ~ 18386819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592456.2
AAGTAAAGCTGCTTAACTTTGGGATATGTTTAGTTGGTGGATCATTAGCTCTCTCTACAGTAAAATGATTCACCCTAATTTATGAAGCAGTTATGTAGCAGCTATACAGAATAATAAGCACACAATTATTTGGACGTTAATGACAAAACTGAAACATACTCTTTTTAAATTTGCGTTGCCAAAATACATGCAATGCACATTCATTGCTGGTAAAGTGGTATTTATTTTTGGAACTGACAGGAACCACTATTCGCGGGGAGGCGGTTTCTAGCCGGATGTATTTTGCGTGGGAACGCGAACATGGCGATCCACTGTAGCAGAACATGCCTACAATATTTGATACATTTGGCCCACGACAATGTTGACTTCAGGCTACCGGAGATTAGGGCGCTGCTGTCACTCAGGGGCAAACCGTTTGATCCAGGTGAAAACTTCAAAGAAAAGTCTCCATTCTGGCGCCTGAATGGCTTGTCAGAGGAAGATGTCAACAGCATCATGGCCAGAACTGTTTGTGCAAAGTCTGCATTTGAGCTGTGGGGTCATGGCAGAACGCACAGTGAACTCAGGAACTCGCTCTTGAAATATCCAACAGAGAACATGTCACCCTTCCTACAAAAAGACTCCACATACAAAATCAATGTCTACACTTTCAACAAGACTCTAGAGTTCGAAGATAGAATTAAGAAGATAGATGCAATGGAATATCTCTCCTTCGAGGGAAGGGTCAATCTAAGGAACCCTAAACACATCTTCTGTCTTTTGGAGGACTATGGAACTGACCCTAACGACATCCCAGACGAGCCTCTCTACATCTACTTTGGGAGATGGATTGCAGATGGCCAGCGTGAGTTGATTCGCTCTCACAGTGTGAAGAACAGGCACTTCATAGGTAACACCAGTATGGATGCTGGGTTGTCTTTTATCATGGCCAACCATGCTAGGGTCAAAGCTTACGACCTGGTCTACGACCCCTTCGTTGGGACTGgtagcCTCCTGGTTGCATGCTCTCATTTTGGTGCATATGTCTGTGGAACAGATATTGATTACAACACCATCCATGGGATAGGCAAAGCGAGTCGTAAGAACCAGAAGTGGAGGGGTCCAGATGAGAACATCAGAGCCAACCTGCGTCAGTACGGCTCAGAGAAGCTGTATGTGGACGTCCTTGTGTCTGACGCCTCCAAGCCTATCTGGAGGGACGGAGTGCTCTTTGACGCCATCATCACTGACCCCCCCTATGGGATTCGGGAGTCAACCAGGAGAACAGGCTCTCAGAAGGACAGTGTAAACAGTGTGAAGCCATCTGAAGACTATGTTGGAGACAGCCATGTCCCCGTTTCCATGGCCTACCACCTGAGTGACATCTTCACTGACCTGTTAAACTTCTCAGCTCACCACCTGGTCATCGGGGGGCGGCTAGTCTACTGGCTACCAATCTACAGGCCAGAgTACTGTGAAGAGATGGTGCCCCTGAATGCCTGTCTCAGACTGGTCAGTAACTGTGAACAGACCCTTTCCAGCCACACCTCCAGACGTCTCATCACCATGGAGAAGATCAAGGAACCAGAGgaGACAGATGCGCTGGCCCACCTGTCAGACCCTCACTTTAGCCCGTACCAAGGCCACAACGCCTTCAGGGAAAAGTACTTCAGCGGCATCAGCAAGAGGACATTGACAGGAAAGGAGGAGACCAACAAGATGGCCACCAACGGTGGGGAGTAATGTAAGGATCACACGATGGCCCAATTCCAAATGGACCCCTAAGCCAGTATGCAATTGTGGAGAGGATTTCACCGGTGCAATCGATATGGTAATAACTCCACCTTGCTGTTTGATAGGCTAGGTGAAAGTTTCACCATATTGCATATACAAATTGAATCCTCACAGATCTGCACAAGAGCATTAGGTGAAGgttctaggggtccatttaggattgggCCGACACCTGCCTATGGTTTACAATGGACTCCATGGGGACATAGGGCTCCCTGTTTTAAATGTCTCATTTTCtattcaaatatgtttttattgtttGATGTTTATTGCCCTTTGTGTAATAAGTGTGAATTGTGAACGAATAAACACCattttaaaata

Function

NR:

description
tRNA (guanine(10)-N2)-methyltransferase homolog isoform X1

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15430 TRM11, TRMT11; tRNA (guanine10-N2)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592456.2 True 2097 mRNA 0.46 13 18359078 18386819

Neighbor

gene id symbol gene type direction distance location
LOC110511644 hint3 coding upstream 5759 18349625 ~ 18353319 (+)
LOC110511665 LOC106579269 coding upstream 10233 18343327 ~ 18348845 (+)
LOC110511763 LOC106605526 coding upstream 128441 18219599 ~ 18230637 (+)
LOC110511795 rwdd1 coding upstream 161399 18188613 ~ 18197679 (+)
LOC118944496 LOC106579030 coding upstream 180224 18175433 ~ 18178854 (+)
LOC110511593 LOC106579240 coding downstream 182879 18569698 ~ 18588248 (+)
LOC110511568 rn146 coding downstream 201880 18588699 ~ 18601905 (+)
LOC110511366 LOC106605529 coding downstream 300946 18687765 ~ 18692685 (+)
LOC110511341 LOC106579140 coding downstream 324817 18711636 ~ 18720405 (+)
LOC110511301 LOC106579115 coding downstream 334092 18720911 ~ 18793719 (+)
G230997 NA non-coding upstream 53364 18305474 ~ 18305714 (+)
G230912 NA non-coding upstream 54018 18298318 ~ 18305060 (+)
G230995 NA non-coding upstream 60832 18297322 ~ 18298246 (+)
G230994 NA non-coding upstream 61800 18296975 ~ 18297278 (+)
G230926 NA non-coding upstream 66602 18292245 ~ 18292476 (+)
G231277 NA non-coding downstream 142244 18529063 ~ 18529365 (+)
G231279 NA non-coding downstream 150811 18537630 ~ 18537829 (+)
G231288 NA non-coding downstream 161709 18548528 ~ 18548758 (+)
G231363 NA non-coding downstream 294887 18681706 ~ 18682023 (+)
G230916 NA other upstream 62973 18295354 ~ 18296105 (+)
LOC100653482 mrap2 other upstream 1560146 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1711494 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 1843185 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2662434 15672260 ~ 15697397 (+)
G231438 NA other downstream 464430 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 839547 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1440311 19821356 ~ 19844652 (+)
G233521 LOC106579937 other downstream 2171957 20558776 ~ 20565712 (+)

Expression


Co-expression Network