LOC110511593 (LOC106579240)


Basic Information

Item Value
gene id LOC110511593
gene name LOC106579240
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18569698 ~ 18588248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592448.2
CGAGCGTGTAGCGGGAGACCGCAGAGGGCTGAAGTCATAAGAGAGCGAGTTGGAGTGGGGAAATGAGTATTGCACGCAAAACTGAAAAGAGCTGAAACTGCGCAGATTATTTTTGCTTTAACTGTCGAACAACGAGAAGTGCGCGACAATCAAGTTGGTTCTCACCTCGTCGAATCTTGGTACTTTATTACAGTTAGGTGCTGCTGCAGCCAGTGACGCGCGCGGCTCCCAGTTTTTGTCTACTCTGTTAGATGATGGGGATGACGCGATGACCTCCTACACGCAGGGCACAATAAAGTAGCCCTCACACCTGGACGTGCGGGGAAATTCGAGAGAGTATCAGTGGAGGATACAGGAAGACAACTGAAACTGTATCAATATGCCAGCCTCGATTATATGATCTACGCTTTCTTTCTTTGAGTATCTTATTTTTCCCGCGGTGGATGATAATCTAACGGTTTGGTTGTGGGAATATGCTCACTACGGATACCTGATTTGGTCTCGCTTTGTGGCACACATGAGGATTCTATCAAGGATGTTACTGTCTAAACGGCCCAGGTGTCATTGGGCCATCGTAAATCAGACATCACTCTCTGCGCAGAGCAGGGGATTCTGCTCTTTCCAGGAATAAGACAACACATTCCCTCTCAAAAAAGTGGAATCAAAGCTGCACTTTTCTGGAGGACATTGACATTGGCTATTCAAGTCATCATCTCCGGGTTACTATGCAATTACAACtgatctcctttgttttgatctTGCACTGCATGGAATACACTGATTGTCAGCAGCAACCCTCTAGGTATCGGCAACATAAACAGAACCCAGGGGTAAGCTCAGGGTGCCAGGGAGGCTGTCTGACCTGCTCTGATTATAATGGCTGTCTGTCCTGTAAGCCCCGCCTCTTTATCTTCCTGGAGAGAAATGGGATGAGGCAGATGGGGGTGTGTCTGCCCTCCTGCCCCAGTGGTTTCTACGGCACCCGCTCACCAGACAGAAACACATGCACAAAGTGCAGGCCGGAGTGTGATTCTTGCTTCAATAAGAACCTTTGCATGCGGTGCCGAGCGGGGTACTATCTCCACCTGGGCAAGTGCCAGGAGAGCTGCCCAGAGAGCCTGGTCTGCAGCGACACACAAAGGGAATGTGTTCCCAAGTGTCCTGCGGACTGTGATGCCTGTCTGATCAATGACACATGTACGAGGTGCAGACCAGGCCTGTACCTGCTGCTGGGGAAGTGTCACCACGTCTGTCCAGATGAGTTTGAACCAAACGACAAACTCATGGAGTGTTCCCTTCAAGTGCACTGCGCAGTGGGTGAGTGGGGAGAGTGGAGCCCCTGCTCCCGGTCAGGGAAAACCTGTGGATTTAAATGGGGTGAGGAGACGAGGACCCGGGAAGTTGTCCAGTTCCCTACCGCCTACGGAAAACCCTGTCCCCCCATCTGGGAAAAGAAAGAGTGTGTCCTCAAGAGGAGGCGATGTCCAGGGCAAGGCAAGGGGAGGAAGGGTGAGCGGCGGGGCGAAAGGAGAAATCGGGACAACCGCCGGGACAAGGACAGCCAGGGGGAAGGCCGGCGGGAGAggaagaaggacagagagagggagaggggggaggcaggtgaCCGGGAGGACTctgagaacaggaacaagacagaGCAAAGACGCCGGAGAGGCCAAAACAGAGACCCTGTTGTCTCACCTGAGGGAGGAGGTCCTACACAGTAACAGAGCCTGGAGGAGCCCTCTCACTCCACCCCCTCTTTGTCCCCCTCGCCCCCTCAACTCCTTGCTGAAGGGGTGCTGCTGCTACCTGTATTatttaaatatatactgtatatgcacaAGAGAGATGGGGTCACTCGATCGGGCCACTACAGACTCTAAGGACTTCTCCCCTACATACCTACCTATCTGCCCCCCTCCACCACACACCACTGAGAGGCCGCCTCCCCCTTCCCGTCCTGTCCTCtagtttcaccagaccagagagacCCAAGAATGCTGTTGATTGGACGGGAATGAACAAAACTGCTCTTGTGAttggatggacagagaggagaggagtgagacaTTGAAATGTGACAGTATGGGGATGATGTGTTTGTCATTGGGAGTCGGGACAATGTAAATGCTTGTTGAATCGGTTATTTAAAAGGCTCCCGCCCAGTTAAAAACAAACTTTGCGTCTTGGTTTCGATGTAGGTTTAATTTGTGACATTATGTagaattgttgttgttgttgtctttatgtttttgtttgttgttttttgctGAGTAAATTATCATGGGATATCActaacagaaagacagacagacagtcagatgtGGTTACTGCATCCAGATGTATAGTAAACATATGAGACAAACCGACTGAATTGATTTTGTGAAAGAATGAGGACGGACCCCAGTGTTTTCCACCCAACTTATTATTGGTCATGTTTGTTCAGAAGCGTCCTGGACAAAGTGCTAGTTTGCCTGTCTGTGTAAGCAGGATCTGTGCTTTCACTAAAGCCACCTGAGCAGAAATCAAAAGCATCTGTATGTCAAATAAACTATAATGGGTTTGTACTTGTCTTTGTTTTTCATTTGTTATCTTTGGGTAATTCTATGCCTgaaaatatttttggtatctcagattgttctggcaacTGTCACATGAAACCTTAATTCATGGGAAGGATGTTTGGCATGCTTTTTCAatttgtatcacaaaccatttGGGGAAAAATCATGATAAAAGTGGACAAtttctgaaatatatatatatatatatttcagaaaCAAGACACTCCATATTTTAGAGCTCTcgataaggagtataatgacaccaCGATGTTGTCTTTATCATGTACAGTTCATGGATCATTTTACAGGGGACATCTATAGGTCTGAAAGGGACGAATTGGCCACTCTCATCCCACAAAAATAGTTTGTGGTACAAATCTAAAAAACATATCAAACATCCTTACTCCCATATGAAGTTTCTATGGGAAAATAGCTAGAACATTCTGAGATAACCTAAATATTTTTGGGACACGCTAGTATGGAATCGGCCCTTTATTATTTGTCAACTACATCAATAAACACTCTCTGGAGACCTGCCTTTCTAATTTCA
>TU264434
TGGACGTGCGGGGAAATTCGAGAGAGTATCAGTGGAGGATACAGGAAGACAACTGAAACTGTATCAATATGCCAGCCTCGATTATATGATCTACGCTTTCTTTCTTTGAGTATCTTATTTTTCCCGCGGTGGATGATAATCTAACGGTTTGGTTGTGGGAATATGCTCACTACGGATACCTGATTTGGTCTCGCTTTGTGGCACACATGAGGATTCTATCAAGGATGTTACTGTCTAAACGGCCCAGGTGTCATTGGGCCATCGTAAATCAGACATCACTCTCTGCGCAGAGCAGGGGATTCTGCTCTTTCCAGGAATAAGACAACACATTCCCTCTCAAAAAAGTGGAATCAAAGCTGCACTTTTCTGGAGGACATTGACATTGGCTATTCAAGTCATCATCTCCGGGTTACTATGCAATTACAACtgatctcctttgttttgatctTGCACTGCATGGAATACACTGATTGTCAGCAGCAACCCTCTAGGTATCGGCAACATAAACAGAACCCAGGGGTAAGCTCAGGGTGCCAGGGAGGCTGTCTGACCTGCTCTGATTATAATGGCTGTCTGTCCTGTAAGCCCCGCCTCTTTATCTTCCTGGAGAGAAATGGGATGAGGCAGATGGGGGTGTGTCTGCCCTCCTGCCCCAGTGGTTTCTACGGCACCCGCTCACCAGACAGAAACACATGCACAAAGTGCAGGCCGGAGTGTGATTCTTGCTTCAATAAGAACCTTTGCATGCGGTGCCGAGCGGGGTACTATCTCCACCTGGGCAAGTGCCAGGAGAGCTGCCCAGAGAGCCTGGTCTGCAGCGACACACAAAGGGAATGTGTTCCCAAGTGTCCTGCGGACTGTGATGCCTGTCTGATCAATGACACATGTACGAGGTGCAGACCAGGCCTGTACCTGCTGCTGGGGAAGTGTCACCACGTCTGTCCAGATGAGTTTGAACCAAACGACAAACTCATGGAGTGTTCCCTTCAAGTGCACTGCGCAGTGGGTGAGTGGGGAGAGTGGAGCCCCTGCTCCCGGTCAGGGAAAACCTGTGGATTTAAATGGGGTGAGGAGACGAGGACCCGGGAAGTTGTCCAGTTCCCTACCGCCTACGGAAAACCCTGTCCCCCCATCTGGGAAAAGAAAGAGTGTGTCCTCAAGAGGAGGCGATGTCCAGGGCAAGGCAAGGGGAGGAAGGGTGAGCGGCGGGGCGAAAGGAGAAATCGGGACAACCGCCGGGACAAGGACAGCCAGGGGGAAGGCCGGCGGGAGAggaagaaggacagagagagggagaggggggaggcaggtgaCCGGGAGGACTctgagaacaggaacaagacagaGCAAAGACGCCGGAGAGGCCAAAACAGAGACCCTGTTGTCTCACCTGAGGGAG

Function

NR:

description
R-spondin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592448.2 False 3117 mRNA 0.47 6 18569698 18588248
TU264434 True 1399 TUCP 0.53 6 18570009 18586841

Neighbor

gene id symbol gene type direction distance location
LOC110511603 LOC106579246 coding upstream 182879 18359078 ~ 18386819 (+)
LOC110511644 hint3 coding upstream 216379 18349625 ~ 18353319 (+)
LOC110511665 LOC106579269 coding upstream 220853 18343327 ~ 18348845 (+)
LOC110511763 LOC106605526 coding upstream 339061 18219599 ~ 18230637 (+)
LOC110511795 rwdd1 coding upstream 372019 18188613 ~ 18197679 (+)
LOC110511568 rn146 coding downstream 451 18588699 ~ 18601905 (+)
LOC110511366 LOC106605529 coding downstream 99517 18687765 ~ 18692685 (+)
LOC110511341 LOC106579140 coding downstream 123388 18711636 ~ 18720405 (+)
LOC110511301 LOC106579115 coding downstream 132663 18720911 ~ 18793719 (+)
LOC110511268 LOC106605544 coding downstream 213720 18801968 ~ 18813046 (+)
G231288 NA non-coding upstream 20940 18548528 ~ 18548758 (+)
G231279 NA non-coding upstream 31869 18537630 ~ 18537829 (+)
G231277 NA non-coding upstream 40333 18529063 ~ 18529365 (+)
G230997 NA non-coding upstream 263984 18305474 ~ 18305714 (+)
G230912 NA non-coding upstream 264638 18298318 ~ 18305060 (+)
G231363 NA non-coding downstream 93458 18681706 ~ 18682023 (+)
G231366 NA non-coding downstream 107655 18695903 ~ 18696158 (+)
G231367 NA non-coding downstream 109090 18697338 ~ 18698907 (+)
G230916 NA other upstream 273593 18295354 ~ 18296105 (+)
LOC100653482 mrap2 other upstream 1770766 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1922114 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 2053805 16477925 ~ 16515897 (+)
zgc:162160 LOC106605640 other upstream 2873054 15672260 ~ 15697397 (+)
G231438 NA other downstream 263001 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 638118 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1238882 19821356 ~ 19844652 (+)
G233521 LOC106579937 other downstream 1970528 20558776 ~ 20565712 (+)
G233545 NA other downstream 2020045 20608293 ~ 20608725 (+)

Expression


Co-expression Network