LOC110511568 (rn146)


Basic Information

Item Value
gene id LOC110511568
gene name rn146
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18588699 ~ 18601905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592445.2
GGACCAATAGAAATGAGAGCGCAAGATGAGAGGAAGTGTGCTATCCGAGGTGGTGTGTGAAAACATCCAGGTGCAACTTTGCAAAACTGCTCACTTGAGACATTTGAACAACCACCAATAAGCCTAATGCTACAGCGGCAACATTAGCAGATATTACATACTTCCTAAGGATGGCTAGCTGTGGTGAGGTTGACCACACTTTGAGCTCGCTCCCATCCAGTAAGAAGGGGAGTGGTGACTCTGCCTGCTCTGTTTCCAGTGGCTCATCACCTGCCCTGCCTGTCCCAGAATGTGCCATTTGCCTGCAGAGCTGTGTTCACCCTGTCCAGCTACCCTGCCGCCATGTCTTCTGCTTCCTGTGTGTGAAAGGGGCGTCCTGGCAGAGCAAGCGCTGTGCTCTCTGTAGACAGGAGGTTCCCGAGGACTTCCTAGAGCACCCCACTCTGCTGTCCCCCGAAGAGCTTAAGACCGGAGGGTGGGGTGCCACAGGGGACAATGCCTGGTACTATGAGGGGAGGAATGGCTGGTGGCAGTATGACGAAAGGACCAGTCGTGAGCTGGAGGACGCTTTCTCCAAGGGCAAGAAGACGGCTGAGATGCTGATAGCCGGGTTCCTGTACGTGGCCGACCTGGAGAACATGGTGCAGTACCGGCGCAATGAGCACGGCCGCCGCCGCAAGATAAAACGGGACGTTGTGGACATCCCCAAGAAAGGGGTGGCGGGCCTCCGTCTGGACACCGAGGTTGGTGCGCAGGGTTCCGCTGCGCCAGGGAGAGGGAACTCTGCAGACGGGGCTGATACTTCAGCAGCCGCAGTGCAGCAGGCTGCAGCATCTCCAGCTACCTCCACAGTCCTGTCTGCTCCTGCCAGGCCTCCCACCTCTCTGGGGGGCCAGCCTGGCAGCCCGACCAGCCCCTCCCTGGAGGACACCCTGGCCCTGCTCCACATCAGTCCCACAGATGCGCCGGAGAGGGCTGAGgttggggagggagaggagggggaagaagaggCCACTGCTACACCCTCCATGTCATCTGGTCCTAACACCTCTGTGGATGGTTCTGGGGACTGGAGCGACGACGAGGGGGATGGGGAGGCAGTGGATCCCCGGGAGCAGAGACTGCGTTTGGGGGAGAGCCCAGAGGACAGGTCCCCCCCTGGGGCTGAGGCCTCCAGCAGCAGTAGTGTGAGGTCGCGAAGGCCTGACGGCCAGTGTACTGAAGTGTGAGCTCAACTCATCTTGAACCTCTGCACTGTAGCTAACATTCTCAGTTAATATAGGACTCTGAAACCGACTCAAACCAACCCTGCATATAACTGTCTCAAGGCAAGGAGATGCTCATTATATTAGACTTTAAAGATGAAAATTACCCCCCTGAAAATTAGTGATAATCTACATTTACTGGTGGGCCTTGGGAGCAAAGTCTTTCCCCATACAACTTGTTAATTGAGCGTTGAGTTGTTTCATGTAAGTTGTTTGAACGGTCCCTTGTCTCCAGACAGTATGTTTGTGATGCAGCCGTGTTGAAAGTAGGAGACTTCTTATTTTAAGAgacatggggtggcaggtagcctagtggttagagcattggaacagtaaccggaaggttgcaagatcgaatcccagagctgccaaggtacaaatctgtcgttctgcccctgaacaaggcaggttcactgcccactgttcctgggcagtcattgacaataagaacaaattcttaactgacttgcctagttaaataaaggttaaattaaaaatgcATTTAGCTGAATTTACCAGCTAGTCAACAGTTGTTTTGATCGGATCAGTGGTTGTTTTTCTCTCTGCGGCAGCTTGGTGTGTTGCGCTCTAGGCTGCTCCAAAATGATTAACACCATGCTCCATGACCTCTCTGATCAAAGTCAGACAACATTTTAATTTAAGTTGCTGATTATTCATCTGAAATGCTAGTCTGTTTCAtaatgtgtgcatgtgttttaAGAGAGGGGTTGGTTTCTTAAACActactggtgaggaggaggactgGTGTTTTAGATTTTAGTTTGATTAActgtttttccctctggttgtaaATTCTATTGTGTGATTACTATGATGGTAAGAAAAGAGCAACGGTTGCTAAGTGGTTTGCTGGCTGTCTCCAGCAAAACCATTTGAagttttaaatgtgtttatttCTTACCAGCTTACTGTCAATTGTCATCTGGTCAGCTCAATTTTACTGTCATTAAGAACCTTTATgtaactatttttgctttgtaatCTTTTGTTACATGGTTTGTAATTTTAAATAAAATGTGTGTATTCATCAACCCAAAAGGTTGATATGGGAAG
>XM_021592444.2
TGTGCTGTGCGTGATTACGTACAATTAAGGTAGTCATCACGTTAACAGGCTAAATGCGCTAGACTTACTACGCTGCTTTTTGTGAAGGAGGAAAACAGACGGTGAGACATTTGAACAACCACCAATAAGCCTAATGCTACAGCGGCAACATTAGCAGATATTACATACTTCCTAAGGATGGCTAGCTGTGGTGAGGTTGACCACACTTTGAGCTCGCTCCCATCCAGTAAGAAGGGGAGTGGTGACTCTGCCTGCTCTGTTTCCAGTGGCTCATCACCTGCCCTGCCTGTCCCAGAATGTGCCATTTGCCTGCAGAGCTGTGTTCACCCTGTCCAGCTACCCTGCCGCCATGTCTTCTGCTTCCTGTGTGTGAAAGGGGCGTCCTGGCAGAGCAAGCGCTGTGCTCTCTGTAGACAGGAGGTTCCCGAGGACTTCCTAGAGCACCCCACTCTGCTGTCCCCCGAAGAGCTTAAGACCGGAGGGTGGGGTGCCACAGGGGACAATGCCTGGTACTATGAGGGGAGGAATGGCTGGTGGCAGTATGACGAAAGGACCAGTCGTGAGCTGGAGGACGCTTTCTCCAAGGGCAAGAAGACGGCTGAGATGCTGATAGCCGGGTTCCTGTACGTGGCCGACCTGGAGAACATGGTGCAGTACCGGCGCAATGAGCACGGCCGCCGCCGCAAGATAAAACGGGACGTTGTGGACATCCCCAAGAAAGGGGTGGCGGGCCTCCGTCTGGACACCGAGGTTGGTGCGCAGGGTTCCGCTGCGCCAGGGAGAGGGAACTCTGCAGACGGGGCTGATACTTCAGCAGCCGCAGTGCAGCAGGCTGCAGCATCTCCAGCTACCTCCACAGTCCTGTCTGCTCCTGCCAGGCCTCCCACCTCTCTGGGGGGCCAGCCTGGCAGCCCGACCAGCCCCTCCCTGGAGGACACCCTGGCCCTGCTCCACATCAGTCCCACAGATGCGCCGGAGAGGGCTGAGgttggggagggagaggagggggaagaagaggCCACTGCTACACCCTCCATGTCATCTGGTCCTAACACCTCTGTGGATGGTTCTGGGGACTGGAGCGACGACGAGGGGGATGGGGAGGCAGTGGATCCCCGGGAGCAGAGACTGCGTTTGGGGGAGAGCCCAGAGGACAGGTCCCCCCCTGGGGCTGAGGCCTCCAGCAGCAGTAGTGTGAGGTCGCGAAGGCCTGACGGCCAGTGTACTGAAGTGTGAGCTCAACTCATCTTGAACCTCTGCACTGTAGCTAACATTCTCAGTTAATATAGGACTCTGAAACCGACTCAAACCAACCCTGCATATAACTGTCTCAAGGCAAGGAGATGCTCATTATATTAGACTTTAAAGATGAAAATTACCCCCCTGAAAATTAGTGATAATCTACATTTACTGGTGGGCCTTGGGAGCAAAGTCTTTCCCCATACAACTTGTTAATTGAGCGTTGAGTTGTTTCATGTAAGTTGTTTGAACGGTCCCTTGTCTCCAGACAGTATGTTTGTGATGCAGCCGTGTTGAAAGTAGGAGACTTCTTATTTTAAGAgacatggggtggcaggtagcctagtggttagagcattggaacagtaaccggaaggttgcaagatcgaatcccagagctgccaaggtacaaatctgtcgttctgcccctgaacaaggcaggttcactgcccactgttcctgggcagtcattgacaataagaacaaattcttaactgacttgcctagttaaataaaggttaaattaaaaatgcATTTAGCTGAATTTACCAGCTAGTCAACAGTTGTTTTGATCGGATCAGTGGTTGTTTTTCTCTCTGCGGCAGCTTGGTGTGTTGCGCTCTAGGCTGCTCCAAAATGATTAACACCATGCTCCATGACCTCTCTGATCAAAGTCAGACAACATTTTAATTTAAGTTGCTGATTATTCATCTGAAATGCTAGTCTGTTTCAtaatgtgtgcatgtgttttaAGAGAGGGGTTGGTTTCTTAAACActactggtgaggaggaggactgGTGTTTTAGATTTTAGTTTGATTAActgtttttccctctggttgtaaATTCTATTGTGTGATTACTATGATGGTAAGAAAAGAGCAACGGTTGCTAAGTGGTTTGCTGGCTGTCTCCAGCAAAACCATTTGAagttttaaatgtgtttatttCTTACCAGCTTACTGTCAATTGTCATCTGGTCAGCTCAATTTTACTGTCATTAAGAACCTTTATgtaactatttttgctttgtaatCTTTTGTTACATGGTTTGTAATTTTAAATAAAATGTGTGTATTCATCAACCCAAAAGGTTGATATGGGAAG
>TU264429
tatatacacgggacacgacaggacgaggacaaaaatacgtctgaactgctatgccatcttgggagagaaagtatctggtgtgaccaccattttggctggtgtagggtgtcattgtaaataagaatgtgttcttaactggcttgcctagttaaattaaaaatgcATTTAGCTGAATTTACCAGCTAGTCAACAGTTGTTTTGATCGGATCAGTGGTTGTTTTTCTCTCTGCGGCAGCTTGGTGTGTTGCGCTCTAGGCTGCTCCAAAATGATTAACACCATGCTCCATGACCTCTCTGATCAAAGTCAGACAACATTTTAATTTAAGTTGCTGATTATTCATCTGAAATGCTAGTCTGTTTCAtaatgtgtgcatgtgttttaAGAGAGGGGTTGGTTTCTTAAACActactggtgaggaggaggactgGTGTTTTAGATTTTAGTTTGATTAActgtttttccctctggttgtaaATTCTATTGTGTGATTACTATGATGGTAAGAAAAGAGCAACGGTTGCTAAGTGGTTTGCTGGCTGTCTCCAGCAAAACCATTTGAagttttaaatgtgtttatttCTTACCAGCTTACTGTCAATTGTCATCTGGTCAGCTCAATTTTACTGTCATTAAGAACCTTTATgtaactatttttgctttgtaatCTTTTGTTACATGGTTTGTAATTTTAAATAAAATGTGTGTATTCATCAACCCAAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0072572 poly-ADP-D-ribose binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592445.2 False 2339 mRNA 0.50 3 18588699 18601905
XM_021592444.2 False 2346 mRNA 0.50 3 18596259 18601905
TU264429 True 722 lncRNA 0.37 2 18595943 18601890

Neighbor

gene id symbol gene type direction distance location
LOC110511593 LOC106579240 coding upstream 451 18569698 ~ 18588248 (+)
LOC110511603 LOC106579246 coding upstream 201880 18359078 ~ 18386819 (+)
LOC110511644 hint3 coding upstream 235380 18349625 ~ 18353319 (+)
LOC110511665 LOC106579269 coding upstream 239854 18343327 ~ 18348845 (+)
LOC110511763 LOC106605526 coding upstream 358062 18219599 ~ 18230637 (+)
LOC110511366 LOC106605529 coding downstream 85860 18687765 ~ 18692685 (+)
LOC110511341 LOC106579140 coding downstream 109731 18711636 ~ 18720405 (+)
LOC110511301 LOC106579115 coding downstream 119006 18720911 ~ 18793719 (+)
LOC110511268 LOC106605544 coding downstream 200063 18801968 ~ 18813046 (+)
LOC110511248 LOC106579093 coding downstream 217096 18819001 ~ 18826722 (+)
G231288 NA non-coding upstream 39941 18548528 ~ 18548758 (+)
G231279 NA non-coding upstream 50870 18537630 ~ 18537829 (+)
G231277 NA non-coding upstream 59334 18529063 ~ 18529365 (+)
G230997 NA non-coding upstream 282985 18305474 ~ 18305714 (+)
G230912 NA non-coding upstream 283639 18298318 ~ 18305060 (+)
G231363 NA non-coding downstream 79801 18681706 ~ 18682023 (+)
G231366 NA non-coding downstream 93998 18695903 ~ 18696158 (+)
G231367 NA non-coding downstream 95433 18697338 ~ 18698907 (+)
G231419 NA non-coding downstream 213660 18815565 ~ 18816290 (+)
G230916 NA other upstream 292594 18295354 ~ 18296105 (+)
LOC100653482 mrap2 other upstream 1789767 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 1941115 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 2072806 16477925 ~ 16515897 (+)
G231438 NA other downstream 249344 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 624461 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1225225 19821356 ~ 19844652 (+)
G233521 LOC106579937 other downstream 1956871 20558776 ~ 20565712 (+)
G233545 NA other downstream 2006388 20608293 ~ 20608725 (+)

Expression


Co-expression Network