LOC110511366 (LOC106605529)


Basic Information

Item Value
gene id LOC110511366
gene name LOC106605529
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18687765 ~ 18692685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592320.2
CTCTGTATCCACTGCATTTGAAAGTATCGCTGAATGGAACTAGAAAAAGGAAAAGGGAAACATCTATTGTAACATTTACCACAAATCTGACTGTCACACACCACTTCATTAACACAGTGACGTTACATTCGATACATTGTCTCCGAATATGAGAAAATGTATGTCGTCCTTTGTCGAGCGCCACAACAATAGTGGCACAATGGAAGTTGATGAGCTGTACCATCCTGGCAGTCAGAACCATGAAGAGTCCCAGTGTCACCCTATGGCCGTGGGAGACATGGAGGCCGTGGAGGCTCTTATGTTCATGAACACCCACTGGAAAGCCAGGACTTCCAGGAGCTTCAAGCATAGACAGTTCCGACCTCTGACCCCTTCCTCTGACTTCTCAGAGGATGACTCTCGTCTCTCACTTGACCCGGCTGAGGTTCATGAGTCTCTGTGTATGACCCCGCCATACAGCCCGCCAAACTTTGAGGCCATTCACAGTCATCCTGCTCCAGAGACAGTACAGACCTCCTGGTGCCAGAGCAATAATCCACAGCCAGCACAGCAGGGCTTGACACAGCCACAGATGGTCAGCCAGCCCCAATCACAAGCCACTAGTGTGATCCGTCACACTGCAGACGCACAGCACTGCAGCTGGAGCATCTGTCCAGCCGCCCCCCTGGAGCACAGACTAACCCAACCCCtgcctccccagccccagccaagCCCAGACAGCATCAACCCCCTGGCAGATAGGCTATCTGGCAGGGACTCCAAAGGGAACATGACACCCCTTGACTCCTCTGCTGAACTGGCTGCCATCCAGGCTCCGGTTACTGTGACTCTGCCAGCCTCTGTTGGTAAATTCCACCAACCTACATCGGTGtcccctgtcaactgtggggttTCTCCTGTTCCAGTTTACTGCCAGATACTACCTGCTGTGCCCATTGCAGCGAACAGTCATATTCCAATGGTAGAGACCAGTCACCAACAACAGTCAGCAGCAGTTGGTCCTCCATCAGTCTTCTTCATGGGCGACCAGGTGACAAAGGGCCCTATCATCTTCTTGGTTCCCCGGCCAGTTGTCGGGATCCAGCCGTCAGTGCTGACATCTGGTGGCACCAAGCTGCCAGCCATCGCCCCAGCGCCAGGCTTCACCTCAGTGGTCCAGCGGAGCAGCCTGCAGCCTGCTGAGGTGTCCAGAGTCCGCAGCCATATCTGCCCCCACGAGGACTGTGGCAAGACCTACTTTAAGAGCTCCCACCTCAAGGCTCACATGAGGACTCACACAGGTGAGAAACCTTTCAAATGCAGGTGGGAAGGCTGTGAGAGATGCTTCGCTCGATCCGATGAGCTATCACGCCACCGTAGAACCCACACGGGAGAGAAGCGCTTCGCCTGCCCCATGTGCCACAGCCGCTTCATGCGTAGCGACCACCTGGCCAAGCACGCCCGTCGACACCTGGCCACCAAGAAGGTGCCCTGTTGGCAGATGGGAATCTGTCACAGCGTTGATGTTACACATGCAGTGTTTTCAGCACCATTCCTTCGTCCTCTGCCCAGAATAAACTCTTGCCTTAAAGACACTGTAGAATAAGCTGTTTCTTCATTAGATGGGAAGGAACTAATTCACTGTGCTACTTACTGCTCACTGAAGACTTCAATGCAATTAATTAATTACATTCTTAAAAAACTAAAGTTCTTAGACATGTTTAAAGTTTCTTGACTTTTAATTTCATATTTCATTCAGGTCCACTTGAGATATGATGTTGTTATTGGCAGTTTAATGTGTGATGAATGATAGCAGGGTTTTACTCCTTTACATTAAAAGTTTGATCAGCTCTTGTTGAAGATTATACAAATATTATTGTTTACAACTGTGCTTTGAACTACTGACAAGAAGAGATCACCCTCTTGTCATTTGGTTATAGTGGTGGCGACTGTCCGCTCTTTTGGTGGCAACCTCCAAAGTGTGGAGCAAGGTCCAGAAATGTAGAAGTTAAAACTGAACAGCCAGAGCCTTAATAAATAGACTCTTCCAGAATCTGTGAGCCTACCAAATAAGTCAATTACTGTTATGGATTGCAAAACTATGCAGGACTATTAGATCTTGTGCATTTAATTGTTTTTCTACCTACTGAATGTGCTCAATACACTGTATATTTAATATTCATGAGAATTATGTTTGGCCAAAGAGAATGTTAAGAGAAAATGTATATTTAACTTGACTAAATTACATATATTTCTTATTTCGTtacaggtgaaataaaatgtgtaAAACTTTA

Function

NR:

description
Krueppel-like factor 10

GO: NA

KEGG:

id description
K09209 KLF10_11, TIEG; krueppel-like factor 10/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592320.2 True 2273 mRNA 0.48 4 18687765 18692685

Neighbor

gene id symbol gene type direction distance location
LOC110511568 rn146 coding upstream 85860 18588699 ~ 18601905 (+)
LOC110511593 LOC106579240 coding upstream 99517 18569698 ~ 18588248 (+)
LOC110511603 LOC106579246 coding upstream 300946 18359078 ~ 18386819 (+)
LOC110511644 hint3 coding upstream 334446 18349625 ~ 18353319 (+)
LOC110511665 LOC106579269 coding upstream 338920 18343327 ~ 18348845 (+)
LOC110511341 LOC106579140 coding downstream 18951 18711636 ~ 18720405 (+)
LOC110511301 LOC106579115 coding downstream 28226 18720911 ~ 18793719 (+)
LOC110511268 LOC106605544 coding downstream 109283 18801968 ~ 18813046 (+)
LOC110511248 LOC106579093 coding downstream 126316 18819001 ~ 18826722 (+)
LOC110511188 LOC106605483 coding downstream 351622 19044307 ~ 19066203 (+)
G231363 NA non-coding upstream 5742 18681706 ~ 18682023 (+)
G231288 NA non-coding upstream 139007 18548528 ~ 18548758 (+)
G231279 NA non-coding upstream 149936 18537630 ~ 18537829 (+)
G231277 NA non-coding upstream 158400 18529063 ~ 18529365 (+)
G231366 NA non-coding downstream 3218 18695903 ~ 18696158 (+)
G231367 NA non-coding downstream 4653 18697338 ~ 18698907 (+)
G231419 NA non-coding downstream 122880 18815565 ~ 18816290 (+)
G231449 NA non-coding downstream 172092 18864777 ~ 18865465 (+)
G230916 NA other upstream 391660 18295354 ~ 18296105 (+)
LOC100653482 mrap2 other upstream 1888833 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 2040181 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 2171872 16477925 ~ 16515897 (+)
G231438 NA other downstream 158564 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 533681 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1134445 19821356 ~ 19844652 (+)
G233521 LOC106579937 other downstream 1866091 20558776 ~ 20565712 (+)
G233545 NA other downstream 1915608 20608293 ~ 20608725 (+)

Expression


Co-expression Network