XLOC_021614


Basic Information

Item Value
gene id XLOC_021614
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19473396 ~ 19476151 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044812
AGGATGAAATATAGAAAGAGAAAGAGTGTTTTAAACAAATTCGTACACATTGTTTTCAGAGACagagctgtttatctgttagTAACATTTGTAAAATGCCCTGAGAAATATTCTACAGAACTGCAGCTAATCAGATTCATGTTAAGGGCAAATTGAATCACTGTTTTTAAATCAAGGTGCATAAATTTCAgaatatatttaacaaaaaaaaaaattgtttttgacAAACACCGCATCAGCTTCAGACCAGCAGAATTCATTAGGAAATGGTGCCCTCTGCTGGTCAGCTTTTAAACCGCTAGGTTAAATACTTGCCAATGCACATTATGAAACAACATTGGCAttcattaatcacatttaaaagaaaatctaatcATTTCTTATATAGCGTCATAAATATCTATGTACATGTACAAAGAGTTCACACATTTGTGCTTTTGATTTAATACTGAACAGGACATCATGTTTGATACAACCTTGTTTTAATATAACATCTGTACAACCAAGAATGTAAAAAAACCAAAAACAGCTAAAATGAAGAATGACTCACttttcatcttttaaaaaaatattgtctgcATTTTGCTCCTTGTTCAcaaaccgttttttttttctccttgaaAATCCAAACAAAAAGTATTGACAAAAATGAAACATTGAAAGGCAATTACATTTCTTGGCAATATAAATATAGTGGTATGAACAAGGTTTTTCAAACATCTCATTTAGGAAGAGCATTACCGAAAACAGTGAAAATCTGGCCACCGTCTGAGTCACTATCTCATTAATACGAAACCAGATTTCATTTTTCCTTTATTTCAGATATTTGATGTGCTCTTATTGTTAAGTATGTACATTCCTAATGCCAGTAGTCTATGAGGGAGCATGGCATCCCAATGGCATTCAGTTGTAAGTGTAGTCCGAATAGTAGTCTGACCGTCCACCCCCTCCCCTCCCAGGCGGGTAGCCCCAATTACAGGATGGGCCTCCTCTGATGTGACCCCTACCCGGTCTAGATCTCATAGGGTGCGGTGGAACTCCTCGACCCCTGAAGCCACCCCGCATCATATCAGGGGGACCCCCTCTGGGATTGTACATGCTATTGTTGTGTCCACCTCGGCACATGGCTCCCATTGGAGCTCCAGGGAGGGGTAAGAGTCCTCTGCTGGAAATGCCACCCCTGGCAGGAGGGGCTTGACTGCCACCCTGACTCTCTGATGACGAGTTCACTGGAGTTCTGCTGCCTTGGCTGCAAGAACTTGAACTAGCCAATGCACTGTCTTTCTCTCCGATGCCCTCTTGCTGTCCTACTTTAGAGGTGCTTGAAGTCATGGCCTTTTCTTCCTCTTGTTCCTGAGAGGTCCCACTCTCTGTGGCTCCTATCCATGATCCATCTGTGGGTTTTGCGGCCTCAGACTGGGTTGAAGGTAAAGCACTAAATCCTGCCCCGCTCTGTCCAGCCGTGAAACTGTGCTGGCCTCCTGGTGTGGGACCCCAGTTGTAAAGCGGTGGAACAGGGGGAATTGGAGTGAGGGCTGGAAAGAGTGTGGATTCTGGGTAAGAGGGAAAAGTGGTGCGAATAGAGGATGAAGAAAAAGTAGAAGATGAAGATGGAGTCTCTACATCTTTCTTAATGGTTTGAGAGCCTGGATGTCCTTGCTTATTAGCAGTGATTGCCATTTCCACCCCAGGCACTCCCACACTGTCAGCAATGTGTCCAGGTGGTTGAAGAGACGAGACTGATTCTGGAACAGGAGGCAGCACCTCCACTAAGCTAACCGGGGGCTGAGGGAAGGATGGGGGAATGGGAAGCGGTTGGCCAATGGGTAGGGTCAGGGTGTTTGCAGGAGGTGGGACCCCAGGAGGAGCAACACTTTGACTATAATCTGATCCCCTGGAAGCCACTTGGACTGGAGATGAATATGCTGAGGACATGTGGTATGCAGGAGAACCAGAGTAAGGGCTCCACTGTGATGAACTGGGACACAGGTAGCTCTGGTGGGGGTTCACACCGAAACTGGTCAGGGTGTCCTCTACTTCAGGCCTAGATGCACTCTCTTGACTGGCAGCTTTATAAAGAGCTATGGCAGACTTCAAAGCTGCGTAATCTGAGAAAGAGCCCTGGCTAGGGCACATAGAGGGGTTTGGAAGAACAAGTGGATCCATTATGGGGTCCAAAGATGGTTGGTTAGGAAGGGGAGGACGAAATCCATCGGTCTGGGGTGGAGGGGGTTGAGGTGCATGTGGTTCTGTTAGGTCTTTTTCTGTCTGAATGTTAGTATCGGAGACTGGCATGTCATCTTCAGAGTCTATAGACATGTCCTCTTCATCGCGAACAGCATCAGGCTCCACTGAGCAATCAAATAAATGACAAAGTGTTAAAATCAAAATCTATCATTTCTTTGTGAATTCTGTCAGGAAAAGAAGATCAAGAGTTTACCTGGATTAGGTAGGACAGCCACTGTAACGTCTTCAGGGATACTGATCAAACTCTGAAAGTTGTTCATTATGTCATTCATACCTGCAATGATGACTCCACTACCAGAGAACTGAGAGAATTTGTCATCGTGTCTTTctgtaaatgtaaagaaaaaaacaatttagcAAACTCTGCAGACAACTGCACATATCATCGCTATTGCACCACAGTCATATTAATCAACAAAAAGAGGACTAAATCACCTGAACGTGTAGTGCTACAGACAAAGGAAACAGAATTGCTGctaaggctgtactcacactaggtacagttgcct

Function

GO:

id name namespace
GO:0043966 histone H3 acetylation biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044812 True 2756 lncRNA 0.44 1 19473396 19476151

Neighbor

gene id symbol gene type direction distance location
XLOC_021612 apobec2b coding upstream 252369 19213472 ~ 19221027 (+)
XLOC_021613 CR388168.1 coding upstream 254456 19217528 ~ 19218940 (+)
XLOC_021611 si:dkey-109j17.5 coding upstream 266977 19202636 ~ 19206419 (+)
XLOC_021610 ccdc115 coding upstream 272068 19198244 ~ 19201328 (+)
XLOC_021609 si:dkey-93l1.4 coding upstream 285580 19182819 ~ 19187816 (+)
XLOC_021615 atp6ap1lb coding downstream 82423 19558574 ~ 19583814 (+)
XLOC_021616 slmapb coding downstream 113855 19590006 ~ 19604413 (+)
XLOC_021617 flnb coding downstream 130140 19606291 ~ 19652915 (+)
XLOC_021618 abhd6b coding downstream 179150 19655301 ~ 19667758 (+)
XLOC_021619 kctd6b coding downstream 193934 19670085 ~ 19673769 (+)
XLOC_021608 CR388168.2 non-coding upstream 291008 19177891 ~ 19182388 (+)
XLOC_021607 NA non-coding upstream 353953 19105546 ~ 19119443 (+)
XLOC_021606 CR788311.1 non-coding upstream 406409 19051485 ~ 19066987 (+)
XLOC_021604 NA non-coding upstream 544394 18924470 ~ 18929002 (+)
XLOC_021627 AL953864.1 non-coding downstream 711474 20187625 ~ 20187739 (+)
XLOC_021628 NA non-coding downstream 869159 20345310 ~ 20361426 (+)
XLOC_021632 CR352228.2 non-coding downstream 995604 20471755 ~ 20471870 (+)
XLOC_021651 NA non-coding downstream 1996951 21473102 ~ 21474482 (+)
XLOC_021656 CR847529.1 non-coding downstream 2147584 21623735 ~ 21623849 (+)

Expression


Co-expression Network