LOC110511312 (LOC106605543)


Basic Information

Item Value
gene id LOC110511312
gene name LOC106605543
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18793985 ~ 18797369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592284.2
TCAAATGGCTTTTGCAATTATTGGTTTAAGCATAGGATACTCCAGCTATCCTATAAGATTCGAATAATTCAAATGCATTTATAACGTTAACAATACTTTATATCATGGCCATTTTGTTGCAATTCTTGTAATGTATTATTCTGTTCTTCTTGACAACACAAGCGCAGTTGGTGAATTTATTATGAGGGTTGAAGCGGATGGAAACTCCCAAAACAGTCTGCGCATGCCCTCACCATTAgggacttttatttattttaagtttTGCTACCGCAGCCTATAAAAATTACCGACAAACGATTGCAGCCCATTTCTCATTCTCAGTCGAAATGATACACACAAAGTTATGCACTGTTGTAATGTAGTCTATATCGTTCTGTCAAATTAACAATGATGTTACTATGTAACGAAAAACGCGAGATTTTACCTGAAAGGAGCTTGCAACTTCATTTACACGCTCTTAGCAAATCTATGTCATGCTGTGCAGTGGAAAGGCTGTGCGTGTACTTGTTGAGCTCCAGGACCATCACAGAGTATGAGAGCCAGGTGATCTGGTCCCAGAGAACAGACATGGAGAAGGCTGCCAAACTGCTCCAGGTGGTGCTGAAGAAGGGTCACAACGCCTGTCTGCTCTTTTTCGACTCACTAGAAAAGTGTTGCCAGTGCCCCCCACAGTTCGAAAGAGTCACCGGCCTCCCAGagaggaggaggaccaaCACTGCCCCAACTTACGTCATCAACATCAGCCATTCCAATTTGAGTAACTGCATCATTGGAGATGGCAACTTTCAAGGTGTGACAACGTGTATACGACAACCTCAGAGCATGGGTTCAGAGGATGCTAGGCATGAGACAATGGGAGGCAACATCACCAGTGATCACCAGAGAGCAGTACAGGCCTGTCCAGATCCAGAGCTCCAGAGGAGTGTCCAGGTCTATGGGTCCCAACTACAGTATGTCATCATCGGGGACAACAACAACCTGCAGGCTGAATACATACcggaagaggaagaaggggaaGAAGAAGAACTCATTAATAAAAGTAACTGATTGGATTTGTGTAGTGCTTTTCCAGATGCTCAATGTGGTTTACATTGTATTGGGGAAACTCCCCTCATACACCACCAACTAGTTTCAATTTaaatcatttagcagactcttttatccagagtgacttacaggagcaattagtgtTAGgtgcctttcggttactggcccagcgctcttaactgctaggctacctgcctctggaGCCAAATGTTACATGTTCAAATCAggtgatagaaagttgtttttgagatttttgttttaagcctatcccaaaccttaacccttaacctaaccattTAGAGTTAATGCCTCACCTTAAGATCTCGGAGTTAAAGCCTAAATTAACTTTAACCTAAAAAatgtggagttaatgcctaaactttaATGTCTAAGCTAGTTGTTGTGTGGCACTGCATCAGTATCCGACAGAGCCATACATATATGGCTCTTCTATCCTAGATGCCATCTCctgctgttgtgcccttgagcaagtgaCTGCACCACGGGCGACCGTGGCTCTCAATCCCCATAAGTGATATGGGGACAAAATGTATGGCCATTGGTTAAATTGTAATGTTCCTTGCTGTGTCGATGAACTTGATTTCTGGGGAATGTATATGTATTGTAAATTGCTGTGTATTGTTTGGATAGTATAACTTAACCCTACATAATCAAAGAATGAACCATATTTTTGGTCCGTGGACTTATGGAGTAAGTATTGAATCTTACAGTACATACATTACGTTCTGTGAACCCAATGTATAATGACCGCACTGACCACCGCTATTGATAAAGTGCATTTCATTTGTTTTAAGTATTTAATGCTGTAACAAATAAAAAGGTGCTGTTTTACTTTGAA
>XM_021592290.2
TTCAGTGCTGCTCAAATGGCTTTTGCAATTATTGGTTTAAGCATAGGATACTCCAGCTATCCTATAAGATTCGAATAATTCAAATGCATTTATAACGTTAACAATACTTTATATCATGGCCATTTTGTTGCAATTCTTGTAATGTATTATTCTGTTCTTCTTGACAACACAAGCGCAGTTGGTGAATTTATTATGAGGGTTGAAGCGGATGGAAACTCCCAAAACAGTCTGCGCATGCCCTCACCATTAgggacttttatttattttaagtttTGCTACCGCAGCCTATAAAAATTACCGACAAACGATTGCAGCCCATTTCTCATTCTCAGTCGAAATGATACACACAAAGTTATGCACTGTTGTAATGTAGTCTATATCGTTCTGTCAAATTAACAATGATGTTACTATGTAACGAAAAACGCGAGATTTTACCTGTGGAAAGGCTGTGCGTGTACTTGTTGAGCTCCAGGACCATCACAGAGTATGAGAGCCAGGTGATCTGGTCCCAGAGAACAGACATGGAGAAGGCTGCCAAACTGCTCCAGGTGGTGCTGAAGAAGGGTCACAACGCCTGTCTGCTCTTTTTCGACTCACTAGAAAAGTGTTGCCAGTGCCCCCCACAGTTCGAAAGAGTCACCGGCCTCCCAGagaggaggaggaccaaCACTGCCCCAACTTACGTCATCAACATCAGCCATTCCAATTTGAGTAACTGCATCATTGGAGATGGCAACTTTCAAGGTGTGACAACGTGTATACGACAACCTCAGAGCATGGGTTCAGAGGATGCTAGGCATGAGACAATGGGAGGCAACATCACCAGTGATCACCAGAGAGCAGTACAGGCCTGTCCAGATCCAGAGCTCCAGAGGAGTGTCCAGGTCTATGGGTCCCAACTACAGTATGTCATCATCGGGGACAACAACAACCTGCAGGCTGAATACATACcggaagaggaagaaggggaaGAAGAAGAACTCATTAATAAAAGTAACTGATTGGATTTGTGTAGTGCTTTTCCAGATGCTCAATGTGGTTTACATTGTATTGGGGAAACTCCCCTCATACACCACCAACTAGTTTCAATTTaaatcatttagcagactcttttatccagagtgacttacaggagcaattagtgtTAGgtgcctttcggttactggcccagcgctcttaactgctaggctacctgcctctggaGCCAAATGTTACATGTTCAAATCAggtgatagaaagttgtttttgagatttttgttttaagcctatcccaaaccttaacccttaacctaaccattTAGAGTTAATGCCTCACCTTAAGATCTCGGAGTTAAAGCCTAAATTAACTTTAACCTAAAAAatgtggagttaatgcctaaactttaATGTCTAAGCTAGTTGTTGTGTGGCACTGCATCAGTATCCGACAGAGCCATACATATATGGCTCTTCTATCCTAGATGCCATCTCctgctgttgtgcccttgagcaagtgaCTGCACCACGGGCGACCGTGGCTCTCAATCCCCATAAGTGATATGGGGACAAAATGTATGGCCATTGGTTAAATTGTAATGTTCCTTGCTGTGTCGATGAACTTGATTTCTGGGGAATGTATATGTATTGTAAATTGCTGTGTATTGTTTGGATAGTATAACTTAACCCTACATAATCAAAGAATGAACCATATTTTTGGTCCGTGGACTTATGGAGTAAGTATTGAATCTTACAGTACATACATTACGTTCTGTGAACCCAATGTATAATGACCGCACTGACCACCGCTATTGATAAAGTGCATTTCATTTGTTTTAAGTATTTAATGCTGTAACAAATAAAAAGGTGCTGTTTTACTTTGAA
>XM_021592293.2
CATAAAGTAACTTTTTTTCCAAATGAAAAGAATGGGGGGGAAACCTGTACATTGATCCTTATCCTCGTCTGATTCTAGATGTATCACCTGAATCATCCTAGGACCTTCTATCTATGAGAAAGGAGCTTGCAACTTCATTTACACGCTCTTAGCAAATCTATGTCATGCTGTGCAGTGGAAAGGCTGTGCGTGTACTTGTTGAGCTCCAGGACCATCACAGAGTATGAGAGCCAGGTGATCTGGTCCCAGAGAACAGACATGGAGAAGGCTGCCAAACTGCTCCAGGTGGTGCTGAAGAAGGGTCACAACGCCTGTCTGCTCTTTTTCGACTCACTAGAAAAGTGTTGCCAGTGCCCCCCACAGTTCGAAAGAGTCACCGGCCTCCCAGagaggaggaggaccaaCACTGCCCCAACTTACGTCATCAACATCAGCCATTCCAATTTGAGTAACTGCATCATTGGAGATGGCAACTTTCAAGGTGTGACAACGTGTATACGACAACCTCAGAGCATGGGTTCAGAGGATGCTAGGCATGAGACAATGGGAGGCAACATCACCAGTGATCACCAGAGAGCAGTACAGGCCTGTCCAGATCCAGAGCTCCAGAGGAGTGTCCAGGTCTATGGGTCCCAACTACAGTATGTCATCATCGGGGACAACAACAACCTGCAGGCTGAATACATACcggaagaggaagaaggggaaGAAGAAGAACTCATTAATAAAAGTAACTGATTGGATTTGTGTAGTGCTTTTCCAGATGCTCAATGTGGTTTACATTGTATTGGGGAAACTCCCCTCATACACCACCAACTAGTTTCAATTTaaatcatttagcagactcttttatccagagtgacttacaggagcaattagtgtTAGgtgcctttcggttactggcccagcgctcttaactgctaggctacctgcctctggaGCCAAATGTTACATGTTCAAATCAggtgatagaaagttgtttttgagatttttgttttaagcctatcccaaaccttaacccttaacctaaccattTAGAGTTAATGCCTCACCTTAAGATCTCGGAGTTAAAGCCTAAATTAACTTTAACCTAAAAAatgtggagttaatgcctaaactttaATGTCTAAGCTAGTTGTTGTGTGGCACTGCATCAGTATCCGACAGAGCCATACATATATGGCTCTTCTATCCTAGATGCCATCTCctgctgttgtgcccttgagcaagtgaCTGCACCACGGGCGACCGTGGCTCTCAATCCCCATAAGTGATATGGGGACAAAATGTATGGCCATTGGTTAAATTGTAATGTTCCTTGCTGTGTCGATGAACTTGATTTCTGGGGAATGTATATGTATTGTAAATTGCTGTGTATTGTTTGGATAGTATAACTTAACCCTACATAATCAAAGAATGAACCATATTTTTGGTCCGTGGACTTATGGAGTAAGTATTGAATCTTACAGTACATACATTACGTTCTGTGAACCCAATGTATAATGACCGCACTGACCACCGCTATTGATAAAGTGCATTTCATTTGTTTTAAGTATTTAATGCTGTAACAAATAAAAAGGTGCTGTTTTACTTTGAA

Function

NR:

description
uncharacterized protein LOC110511312 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592284.2 False 1906 mRNA 0.42 4 18793985 18797176
XM_021592290.2 False 1860 mRNA 0.42 4 18793985 18797187
XM_021592293.2 True 1597 mRNA 0.43 4 18793985 18797369

Neighbor

gene id symbol gene type direction distance location
LOC110511352 LOC106605528 coding downstream 87511 18697337 ~ 18706474 (-)
LOC110511375 NA coding downstream 117345 18633399 ~ 18676640 (-)
LOC110511506 lyric coding downstream 160738 18624581 ~ 18633247 (-)
laptm4b LOC106605533 coding downstream 169558 18612092 ~ 18624427 (-)
LOC110503735 LOC106605534 coding downstream 183109 18604759 ~ 18623150 (-)
LOC110511207 oxr1 coding upstream 29510 18826879 ~ 19024152 (-)
LOC110511176 LOC106579058 coding upstream 268143 19065512 ~ 19282368 (-)
rims2a LOC106579570 coding upstream 618685 19416054 ~ 19652601 (-)
LOC110512409 LOC106605396 coding upstream 857914 19655283 ~ 19667465 (-)
LOC110512480 flot1 coding upstream 965007 19762376 ~ 19785561 (-)
G231686 NA non-coding downstream 83690 18710092 ~ 18710295 (-)
G231679 NA non-coding downstream 109267 18684112 ~ 18684718 (-)
G231677 NA non-coding downstream 112697 18681037 ~ 18681288 (-)
G231649 NA non-coding downstream 198489 18594986 ~ 18595496 (-)
G231753 NA non-coding upstream 17442 18814811 ~ 18815043 (-)
G231755 NA non-coding upstream 19002 18816371 ~ 18816870 (-)
G231756 NA non-coding upstream 19674 18817043 ~ 18817417 (-)
G231757 NA non-coding upstream 20171 18817540 ~ 18818396 (-)
G231771 NA non-coding upstream 67852 18865221 ~ 18866306 (-)
G231652 rn146 other downstream 192110 18599730 ~ 18601875 (-)
LOC110503747 lars2 other downstream 662931 18093704 ~ 18154474 (-)
LOC110505118 LOC106579600 other downstream 816076 17975160 ~ 17985544 (-)
G229707 NA other downstream 1745641 17043792 ~ 17048344 (-)
G229380 LOC106605502 other downstream 1943786 16849972 ~ 16850199 (-)
G232980 NA other upstream 850717 19648086 ~ 19648629 (-)
G233052 LOC106605397 other upstream 958835 19756204 ~ 19757908 (-)
G233513 LOC106561082 other upstream 1754414 20551783 ~ 20551997 (-)

Expression


Co-expression Network