LOC110511248 (LOC106579093)


Basic Information

Item Value
gene id LOC110511248
gene name LOC106579093
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18819001 ~ 18826722 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592246.2
TCTTGATTGGACGGTTCAGATACAGAGAGGGCGGGACACCAAACCTGCGAACCGGAGTTTGTACCTATCTCATTATCATAAAATATTTAGCATCCCTTGAAACCATCTGACATGTCGGGTGGAATAATTGTCATGGTTTTGAATACTTTTCTTTTGGATTAAcggatatttatatatattaaatattacTGGGGCGACGATCTGCTAAAGTAGATGAAATAGGATGCTCAGTCTACGCCAGTAAATATAATATTTGTTCTTTTTGAAATAATAATTGCTGAACTGTGATGAGATTTTATTGGACAATTGATTCTATTTCATGATCTTGGCTACTTTTTGTTTTTGCAATTTAGTTTCAGGTTATAGGTTAGGAAACATTCTGAACAGTGGTAATTTATTGAATGAGTTAGCCTGTTCAGTTCAAGTAGCCTAGTATAATAATAGAATAAAGATGTGGACTTTTCTTGGAATTGCAAGTTTCACCTACATTTATAAGAAATGCGACGCAGTTTTGGAGTATGCTCACAAAGAGATCATCCTGGCGGCTGTAGTGTTCTTGGCAGTGGGGATGCTGCTATCCTATGTCAGGTACCACGGACATACATTCAAGGTACCCCAAATTCTACAATTACCGCTGGAACTTTTATTATCCCTACCGGTCATCAATACATTTATACCGAAACCCTCAGCTGTCAGTCACAGGAGTGGAGAGAGCGCTTCAAAGAAGGGAGGTGGCAGGAGGAAAATAGTGTGTTCCTCAGGCATGGAGAGCCCCCCAGCAGCAGGGGACTCTCCTGCATCTCAGGAGCCGGATGTGATCATAGTAGGAGCGGGAGTCCTGGGGTCAGCCATGGCTGCAGTGCTGGCCCGGGATGGCCGGAGGGTCACTGTGATAGAGAGGGACCTGAAGGAGCCTGACAGGATAGTGGGAGAGCTGCTGCAGCCTGGTGGATACAGGGCCCTGCGAGAACTGGGAATGGAGGGTTCAGTGGAGGGGCTGGATGCCCACGTGGTGAACGGCTATGTGATTCATGACATCGAGAGCAGCACAGAGGTGGAGATCCCATATCCCCAGGCAGACAGCAGTATCCAGTGTGGCAGGGCCTTTCACCACGGACGCTTTATCATGGGCCTGCGCAGAGCCGCCCTCGCTGAGCCAAATGTTACGCTCATAGAAGGCACTGTGTCCAGCCTGGAGGAAGAGGATGGCTGTGTGACAGGAGTGCAGTACAGGGACAAGGAGACAGGAGACACAAAGGAGGTCCATGCAGCAgtaactgtagtagctgacggCTGTTTCTCAAAGTTCAGGAAGAGCCTGGTAGCTGGGAAGGCCCAGACCTCCTCTCACTTTGTTGGATGTATCATGAAGAACTCTCCCCAGTTCAAACCCCATCATGCTGAGCTGGTCCTGGCCAACCCCAGCCCTGTCCTCATCTACCAGATCTCCTCCTCAGACACCAGGGTGCTGGTGGACATCAGGGGAGAGATGCCCAGGAACCTCACCGAGTACATGGCTGAGAAAATACACCCACAACTACCAGAACACCTAAAAGAGCCGTTCATGGTGGCTCTGCAGAATGACCGGCTGAGGTCTATGCCAGCAAGCTTCCTGCCTCCGTCCCCAGTCAACAAGCCAGGTGTGCTCCTGCTGGGTGACGCCTACAACATGAGACACCCTCTGACCGGAGGAGGGATGAGTGTGGCCCTCAACGACGTCCTGATCTGGAGGAGCCTGATGAAGAACATCCCTGACCTGTACGACAACACAGCCATGCTCCAGGCAAAGAAAAAATTCCACTGGGAACGCAAGTCATCACATTCCTTTGTGGTGAATGTGTTGGCTCAAGCCCTGTACGAGTTGTTTGCTGCAACAGACAATTCTCTCCACCAGCTGAGAAAGGCATGCTTCCTTTACTTCAAGCTGGGTGGGGAGTGCGTCAACGGTCCCATTGGTCTTCTCTCGGTGTTGACGCCCAGTCCGATGACTCTAATTGGACACTTCTTTGCCGTGGCCTTGTACGCCATCTACTACAGCTTCAAGTCTGAGTCGTGGTTCACCAAACCCAGAGCCTTATTCACGAGTGGAGCTATCCTGTACCGCGCCTGTACCGTCATGTTTCCCCTCATCTACTCTGAGTTCAAGTACCTGGTGTACTGAGAAGTGCTCTAATCTGAGCCTTAACCCAGTGGAACGCACACCAGCCTTAGAcaacagggttgtattcattagtgcacaaaCATAGCAAAATATTTTGCAATGGAATACGAAGAAGTTCAGGTTCTCTCCTACACTGTTTCTGCCTGTTTTCTTCCATTTAGTTTCTAGTGAATACGTTTACTGAGCAGTGCCATCACTGACCCCtggtggagaacacacacacaccttatgaCATACAAACATGACATACAAACAGTATAGTGACCTAAAGATGCACTATGAAAGTGTAGTTAACTGTCAAGTCATTTTGGCTGTATGTATGATTTATATGAAACCACTTAGTTTTAGGCCAACAATTTATGCTTTTACTCGTTGGGTGTGGGGAGGCATGCCACTTTCTGGACAATGTTTCTATCCATTTAGGCCAGGGATCCCTTTTGTCTCAAGCGCACCCCTAGAGGCAAAAGATCTGTATAGCCTCTTTAATATTACACCATCCTATATTCACTATCAACAGGGATGCCGTACAGGTCTCTAATGTGACCATTATTCAGTGCTGAAGCCTTTGACCTTGATCATATGCCTTTCTTTATTGCAGCCTAAAGGCCTGCTCAATAAGACGTCTTCTGAGGACGAGGTCTAAATTGACCTGACAGTTATTTAGTAATGCCTTGTATATTCAGAATTTACATCACAACCATGCATTTACGTAGTGTAACAGACAATGTGTAATAAGAGGTTTGCGTTAGCAACTCTTAAATTGCAAATTTGACCAAATAACCAGCTGAATATACAGTAGAACTGACTACAGGTGTCTGTCTAACCACTTTGCTGCTAATTGAACAGAACAAAAAGTGTCCGTCCTGCTTGTAAACTACTGTGGTTGTCTTCTATTTCTCTTCATGCCAATGACTTCTTTCAACACTTAAACAGTTGGTTCCCCCACACGAAGGGGAGTGTGAATGACGACTCAAAAAACACGGATGTTTGTCTACCCTTATTCCAAACGGTGTCCTTATTTTGTTCTGAAAACATATGTATCCTTGTACATTTACAATCAAATGATAATGTATTAAACTGTTTTATTGGTTCAAGTCAGATCGCCTGTCCTTAACTTTTGCCAAGTTATAGATTTCCTGCCTCCAAGGATTTTTACACATTGTGACAAGGGATTTCCCCCCACATCTCTAGTACTTTATTAAACATTCACCCTTCTGTGTGcctggaggaggggagggttgCAACACAAACAAAGAGCACAATGAGATGGGAGCTGATTCAGTTGACTGTAGCTCAGCCACAACAAATCCCTGACCAATGGTCCACTGCGCCATCCATCGCTTCAGCATTTAGGAAGGAATTCATGACAGAATTTCACACTGTGTTGGTGAGAATATTTACTTGTAATTGTATTTTGTTTAATAAATGAGCAATTATGTTTTATCTTTACAA

Function

NR:

description
squalene monooxygenase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004506 squalene monooxygenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K00511 SQLE, ERG1; squalene monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592246.2 True 3613 mRNA 0.46 11 18819001 18826722

Neighbor

gene id symbol gene type direction distance location
LOC110511268 LOC106605544 coding upstream 5955 18801968 ~ 18813046 (+)
LOC110511301 LOC106579115 coding upstream 25282 18720911 ~ 18793719 (+)
LOC110511341 LOC106579140 coding upstream 98596 18711636 ~ 18720405 (+)
LOC110511366 LOC106605529 coding upstream 126316 18687765 ~ 18692685 (+)
LOC110511568 rn146 coding upstream 217096 18588699 ~ 18601905 (+)
LOC110511188 LOC106605483 coding downstream 217585 19044307 ~ 19066203 (+)
LOC110512399 dpys coding downstream 530050 19356772 ~ 19408498 (+)
LOC110512421 LOC106579530 coding downstream 840876 19667598 ~ 19674027 (+)
LOC110512436 LOC106579516 coding downstream 847442 19674164 ~ 19682731 (+)
LOC110503829 LOC106605397 coding downstream 868401 19695123 ~ 19762329 (+)
G231419 NA non-coding upstream 2711 18815565 ~ 18816290 (+)
G231367 NA non-coding upstream 120094 18697338 ~ 18698907 (+)
G231366 NA non-coding upstream 122843 18695903 ~ 18696158 (+)
G231363 NA non-coding upstream 136978 18681706 ~ 18682023 (+)
G231449 NA non-coding downstream 38055 18864777 ~ 18865465 (+)
G231454 NA non-coding downstream 45684 18872406 ~ 18872673 (+)
G231460 NA non-coding downstream 61655 18888377 ~ 18889148 (+)
G231464 NA non-coding downstream 65954 18892676 ~ 18893090 (+)
G231550 NA non-coding downstream 193091 19019813 ~ 19021640 (+)
LOC110511593 LOC106579240 other upstream 232160 18569698 ~ 18588248 (+)
G230916 NA other upstream 522896 18295354 ~ 18296105 (+)
LOC100653482 mrap2 other upstream 2020069 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 2171417 16619192 ~ 16674738 (+)
LOC118944532 NA other upstream 2303108 16477925 ~ 16515897 (+)
G231438 NA other downstream 24527 18851249 ~ 18851982 (+)
G231983 LOC106597055 other downstream 399644 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 1000408 19821356 ~ 19844652 (+)
G233521 LOC106579937 other downstream 1732054 20558776 ~ 20565712 (+)
G233545 NA other downstream 1781571 20608293 ~ 20608725 (+)

Expression


Co-expression Network