LOC110511188 (LOC106605483)


Basic Information

Item Value
gene id LOC110511188
gene name LOC106605483
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19044307 ~ 19066203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592202.2
ATTGTCCTATTTCGGCGTCTGTACATTTCCAGGAAGTTCTAGTTAACGCGGTGCATTCATTCAATCCTGTGCATTTACGTCCCAATTTCAGCTAGTAGATCGATAGATAGTTTATACAATACTTTATTAAAACTTGACACTCAAATGCGCAGAAGGACAGACGGTCATGATAGGCCATACCAAAAGactgacagacagactgcagGTTCAGGAGAGACCAGTCAACAACAACATCGACCACAACAAGGGGCTAAAACGAGCAGGTGCTGGTCGACTGTTACCTCAGTTGGAAAatgtctcctcctcatcatcctcatcccTCCCTTTCTGAACTATGCATCATTGCAAAGAGAGGGCCAACTGTTACTGCCAGAAGATGGTGAAATTATAGATATCGGTTTAGGTCAAAAGATGCACCTGATGTGCAAAGGACAAGGACAGCCAGTTGTCATACTGGATGCCCCCACTGGTATGTCCTCTGACATCTGGTTCCATGTACAAGAGAACATTGCCCTGCTAACCAAGGTGTGCACTTATGACAGAGTGGGACTGGGGTTCAGTAAAAGAGTCCTGCAGAATGAAAGTACAGGGACGGAGAAAGTCTGGGGGATGTCAACCACTGGACGAATGGTGGACAACCTCCACCGCCTCATCGGTTTAGCTGGTCTAGCCACGCCTCTCATCCTGGTGGGGTCTGAACTGGACACGCTCAACGCCAGGTTCTACAGCCATATCCATGACGCGCAGGTGTCAGACCTTGTCCTTATTGATCCCATTCCAGAGGACATCTTTGAGGAGGACCAGTGGCAGAAGTACTGGTACAGTCAGCGGGTACCATCCCTCCAAGCCATGCAATTCTCAGCTGCCACAGGCATCAGCCGCATCCTTATCATTCTGGGGCTGCTAAAGCCCGCCATCATGGGGGACAACATCGCTGAAGACCTCATACAGAGACAGAAGTACCTCCTCAGTAACCCCGCCCACCAGAGCAGTGCTGTAGATGAACATTTTTTTCTGAATGAAAGTGCCTCTCAAGTCAGGGAAATCTCCAAATTCAAACCCCTCTCCAGTAGGACTTCTGTGAGTGTGATTATTGGGGATTCTTTCGATGAGCAAATTCCTGCTCCTCTAAACCAAGTGGTGGCCCAGCTTCAGAAGACGTTACTGGAGCAGACTTACCCCTCGGCCAACCAGATCCATGTTAAAGGAGGGGACCGCAGGATGATCTACAAGAGGCCGTCTGTTGTTAGCAAACACCTGTGGAAGCTGGTGTCCCAACGGCAGTCCAAACAGCAGAGCCAATAACCATAGAGATCTATAGAAGACATCTAGTTCATATGCTCTAATTTCAAGGTTTGAATTCTGTGCCAGTGACACACTGATTCTGCTGCCAAATGTCTCAACTACACTCACAACTGGAAGATGAAGTCACGTCACAGAGGTTCCTTGTTTCTTTTTTTCAGGGATGATTTTTTGACTGGAATGTACTTGACATGTGTATGTCCACACATGAAACCAATTTTTTTTGTATACTTTATTACAAATATCAGACCGTTTTGCCTTAATGCTTGTAAATAAATACAGTCTTCTGAATTTGTATCTGTGTGTTAACTCTACTATCTTTCTGGGATCTATTCAGTCTGTAAAGCTGCAGCGTTACAGATCCCATGATAGAATGTAAAGGTGACGGTGTAAaagtaatttccgattgagccgacatatgcagtgtttaccatgaatgcagtgTCCTCTAAAGTGGAAACATTGACATTAAATTTGATTCACGCAATACAGATTGAACAAAGCCCTCTGTCCCTTATATCTAATGTACAGATCCACTACACTGGTACTGTGTTGTGGCTTTGAAAGAAAAGAGCGAACATCATTGGATTATCCTGAGGATTTCAGTTTAATTATGACACCACATCAAAATAAAAATGATTTCCAACAGTTCTGGAATTTTATTCCATCCATATACATGCATAGCAACAATGTTTTTTAAGAAACTTTTTTTCTCTCGCATAATTAGGACATTGGAATGATTATTTTACATCGGTATCCCCCGTCAACCAACATCCATCAACAGCAATAAATGTAATTATTGTACAATATAATGCAGTCCCCCTCTCATAATACTGCTTTCAGTAATGTTCCCTCATTTACAAAGTATTGCATCGAGAGTAAATGTTAAAAAGGGAGACCAAAGTGTAGTTCAGCAAACAGAAATATGAGTACTATACAAGAATGTTGCCATCCTCCTGAAAACATCCACGTCGGAGTTGAAGAAAAGAGACAGGGACACAGCCACATACGTATGCTAAGCCAAGTGTATGCCAAAACAGAAGATGCAGCTGGATTGTACCTGGCTATCCCACCAAAGGGTTAAGGCCAAGAATCCGAGTCATGAATAGCAAAGCTGCAAATGACATTTAGGCATATACAAAAACTGTTACAGCAAATAAGAATAGACAAGTGCTTCAGTAGCTATTTTGTGTCTAAAATGCATCTCATTTGTATTCTATCGTTTCATTGAGCCTACATTACAGTGTAAACAATATGTGTGCTACACAAGAATGACTATACAA
>XM_021592207.2
ATTGTCCTATTTCGGCGTCTGTACATTTCCAGGAAGTTCTAGTTAACGCGGTGCATTCATTCAATCCTGTGCATTTACGTCCCAATTTCAGCTAGTAGATCGATAGATAGTTTATACAATACTTTATTAAAACTTGACACTCAAATGCGCAGAAGGACAGACGGTCATGATAGGCCATACCAAAAGGTAGCTAAAAAAAGactgacagacagactgcagGTTCAGGAGAGACCAGTCAACAACAACATCGACCACAACAAGGGGCTAAAACGAGCAGGTGCTGGTCGACTGTTACCTCAGTTGGAAAatgtctcctcctcatcatcctcatcccTCCCTTTCTGAACTATGCATCATTGCAAAGAGAGGGCCAACTGTTACTGCCAGAAGATGGTGAAATTATAGATATCGGTTTAGGTCAAAAGATGCACCTGATGTGCAAAGGACAAGGACAGCCAGTTGTCATACTGGATGCCCCCACTGGTATGTCCTCTGACATCTGGTTCCATGTACAAGAGAACATTGCCCTGCTAACCAAGGTGTGCACTTATGACAGAGTGGGACTGGGGTTCAGTAAAAGAGTCCTGCAGAATGAAAGTACAGGGACGGAGAAAGTCTGGGGGATGTCAACCACTGGACGAATGGTGGACAACCTCCACCGCCTCATCGGTTTAGCTGGTCTAGCCACGCCTCTCATCCTGGTGGGGTCTGAACTGGACACGCTCAACGCCAGGTTCTACAGCCATATCCATGACGCGCAGGTGTCAGACCTTGTCCTTATTGATCCCATTCCAGAGGACATCTTTGAGGAGGACCAGTGGCAGAAGTACTGGTACAGTCAGCGGGTACCATCCCTCCAAGCCATGCAATTCTCAGCTGCCACAGGCATCAGCCGCATCCTTATCATTCTGGGGCTGCTAAAGCCCGCCATCATGGGGGACAACATCGCTGAAGACCTCATACAGAGACAGAAGTACCTCCTCAGTAACCCCGCCCACCAGAGCAGTGCTGTAGATGAACATTTTTTTCTGAATGAAAGTGCCTCTCAAGTCAGGGAAATCTCCAAATTCAAACCCCTCTCCAGTAGGACTTCTGTGAGTGTGATTATTGGGGATTCTTTCGATGAGCAAATTCCTGCTCCTCTAAACCAAGTGGTGGCCCAGCTTCAGAAGACGTTACTGGAGCAGACTTACCCCTCGGCCAACCAGATCCATGTTAAAGGAGGGGACCGCAGGATGATCTACAAGAGGCCGTCTGTTGTTAGCAAACACCTGTGGAAGCTGGTGTCCCAACGGCAGTCCAAACAGCAGAGCCAATAACCATAGAGATCTATAGAAGACATCTAGTTCATATGCTCTAATTTCAAGGTTTGAATTCTGTGCCAGTGACACACTGATTCTGCTGCCAAATGTCTCAACTACACTCACAACTGGAAGATGAAGTCACGTCACAGAGGTTCCTTGTTTCTTTTTTTCAGGGATGATTTTTTGACTGGAATGTACTTGACATGTGTATGTCCACACATGAAACCAATTTTTTTTGTATACTTTATTACAAATATCAGACCGTTTTGCCTTAATGCTTGTAAATAAATACAGTCTTCTGAATTTGTATCTGTGTGTTAACTCTACTATCTTTCTGGGATCTATTCAGTCTGTAAAGCTGCAGCGTTACAGATCCCATGATAGAATGTAAAGGTGACGGTGTAAaagtaatttccgattgagccgacatatgcagtgtttaccatgaatgcagtgTCCTCTAAAGTGGAAACATTGACATTAAATTTGATTCACGCAATACAGATTGAACAAAGCCCTCTGTCCCTTATATCTAATGTACAGATCCACTACACTGGTACTGTGTTGTGGCTTTGAAAGAAAAGAGCGAACATCATTGGATTATCCTGAGGATTTCAGTTTAATTATGACACCACATCAAAATAAAAATGATTTCCAACAGTTCTGGAATTTTATTCCATCCATATACATGCATAGCAACAATGTTTTTTAAGAAACTTTTTTTCTCTCGCATAATTAGGACATTGGAATGATTATTTTACATCGGTATCCCCCGTCAACCAACATCCATCAACAGCAATAAATGTAATTATTGTACAATATAATGCAGTCCCCCTCTCATAATACTGCTTTCAGTAATGTTCCCTCATTTACAAAGTATTGCATCGAGAGTAAATGTTAAAAAGGGAGACCAAAGTGTAGTTCAGCAAACAGAAATATGAGTACTATACAAGAATGTTGCCATCCTCCTGAAAACATCCACGTCGGAGTTGAAGAAAAGAGACAGGGACACAGCCACATACGTATGCTAAGCCAAGTGTATGCCAAAACAGAAGATGCAGCTGGATTGTACCTGGCTATCCCACCAAAGGGTTAAGGCCAAGAATCCGAGTCATGAATAGCAAAGCTGCAAATGACATTTAGGCATATACAAAAACTGTTACAGCAAATAAGAATAGACAAGTGCTTCAGTAGCTATTTTGTGTCTAAAATGCATCTCATTTGTATTCTATCGTTTCATTGAGCCTACATTACAGTGTAAACAATATGTGTGCTACACAAGAATGACTATACAA

Function

NR:

description
uncharacterized protein LOC110511188 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592202.2 False 2585 mRNA 0.43 11 19044307 19066203
XM_021592207.2 True 2599 mRNA 0.43 11 19044307 19066203

Neighbor

gene id symbol gene type direction distance location
LOC110511248 LOC106579093 coding upstream 217585 18819001 ~ 18826722 (+)
LOC110511268 LOC106605544 coding upstream 231261 18801968 ~ 18813046 (+)
LOC110511301 LOC106579115 coding upstream 250588 18720911 ~ 18793719 (+)
LOC110511341 LOC106579140 coding upstream 323902 18711636 ~ 18720405 (+)
LOC110511366 LOC106605529 coding upstream 351622 18687765 ~ 18692685 (+)
LOC110512399 dpys coding downstream 290569 19356772 ~ 19408498 (+)
LOC110512421 LOC106579530 coding downstream 601395 19667598 ~ 19674027 (+)
LOC110512436 LOC106579516 coding downstream 607961 19674164 ~ 19682731 (+)
LOC110503829 LOC106605397 coding downstream 628920 19695123 ~ 19762329 (+)
LOC110503837 LOC106605407 coding downstream 735036 19801239 ~ 19801909 (+)
G231906 NA non-coding upstream 809 19043284 ~ 19043498 (+)
G231890 NA non-coding upstream 10161 19033824 ~ 19034146 (+)
G231550 NA non-coding upstream 22667 19019813 ~ 19021640 (+)
G231464 NA non-coding upstream 151217 18892676 ~ 18893090 (+)
G231460 NA non-coding upstream 155159 18888377 ~ 18889148 (+)
G231936 NA non-coding downstream 37633 19103836 ~ 19104046 (+)
G231944 NA non-coding downstream 56008 19122211 ~ 19122424 (+)
G231946 NA non-coding downstream 60541 19126744 ~ 19127080 (+)
G231947 NA non-coding downstream 63503 19129706 ~ 19130051 (+)
G231949 NA non-coding downstream 67960 19134163 ~ 19134805 (+)
G231438 NA other upstream 192325 18851249 ~ 18851982 (+)
LOC110511593 LOC106579240 other upstream 457466 18569698 ~ 18588248 (+)
G230916 NA other upstream 748202 18295354 ~ 18296105 (+)
LOC100653482 mrap2 other upstream 2245375 16794699 ~ 16801793 (+)
LOC110503770 LOC106605493 other upstream 2396723 16619192 ~ 16674738 (+)
G231983 LOC106597055 other downstream 160163 19226366 ~ 19234295 (+)
LOC110512505 LOC106579702 other downstream 760927 19821356 ~ 19844652 (+)
G233521 LOC106579937 other downstream 1492573 20558776 ~ 20565712 (+)
G233545 NA other downstream 1542090 20608293 ~ 20608725 (+)
G234322 dcst2 other downstream 2197872 21264075 ~ 21264506 (+)

Expression


Co-expression Network