LOC110511176 (LOC106579058)


Basic Information

Item Value
gene id LOC110511176
gene name LOC106579058
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19065512 ~ 19282368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971043.1
CCAAACCCCGCGCCAAATATTGGTGGTTCAAAATGTCTTGAGTATTATTTGGCTAACGACACAAAATGTGACATTCCACTAGTAATTAACAATTATGATATCACAATTCGGGTAGCACACGCTAAAAGTCAAGTTTAAGAAGCGGTGTCTACGGTACCCGTGGAGGCACAAACCTTATCTTCAAACAAAAGCGCGAAACGCTTTCACCTCCCCAGTCAGTCCGTGCGGATCGCAACTCAGTGCAGCCTCATCTCGGAGAACGCCATTGAgaaagagtgagtgaaagagagagagcgagctagagagaaatagagcagatcagaggaagagaaaagaaagagacagagcgacaTACTCTGTGAAAAAAAGTGTCCATAATTCGTCACCCTTTCTTTCTCAATTTCCATCACAAACCCTACCGGTGCTTGGATGAACCAAAACCTATCGATCAGTCAGTGCTACACCTGGATCTCCTGACCAGCTCCGAGCAGGCATGTCCCGAAGGAAGCAGAGCAACCCCAGGCAAATTAAACgtccCCTAGAGGATGGCGCcctgggggaagaggaggagtgtgtgtCGGAGGAGAACGAGCTCATGGCCAAAGATGAGTTCTCCACAGAGGATAACTTCTCAGCAGAGTTTGAGTCAGAGAACATGAGCTGTGAGGACATTGAGTTTTACTGCAACAAAGGTGAAGAAGATGGCAGTGGAGAAGCAGGGGAGTCAGACATGGACGGGCAGTGTGAGAAGACCAGACACCCAGCTATAGGACCAGAGGATTGGGATGGACCAAGAGAGCTGGATGCGTTCCACAAGGATGGGGAGCGTCGGATCCACAGCCGCCAGCAGCTCCCTGTGGGAACCACGTGGGGACCTTTCAATGGGAAGATCGAGATGAACATCGATGGCAGCGGCATGAAGATGAAGAGCTGTGTACCGGTGGTGCTCAGCGCGGGCCCCAGGTGGCTGCTGGATGTGACTTGGCAAGGAGCAGAAGACAACAAAAATAACTGTGTGGTGTACAGCAAAGGTGGCCAGCTGTGGTGTACCACCACTAAGAACATCATGGGGGGCGAGGAGCTAGTGGCGTTCGCCGTGGACTTTGACTCCCGTCTACAGGCCATCAACCACATGTCTCTGAGCGAGGGGATGTACCCGGCTAGACTGCTGGACACCATCCAGCTCCTGCCTCAGCAGGCCGCCATGGCCTCCATTCTGCCCACCGCCATCGTCAACAaggacaTCTTCCCATGTAAGGCGTGTGGGATCTGGTACCGCAGTGAAAGGAACCTGCAGGCCCACCTGATGTACTACTGCAGTGGCAGGCAGAGGGAGCCAGAGAGCCAAGGGGAGGAGAACGACAACAGACCCCACGAGACACCCAGCATCTGCCCCTTCCCACAGTGCAACAAGAGCTTCACCAGCGCCAGGGCCCTGGAAATGCACCTGAGCACGCACAGCGGTGTCAAAATGGAAGAGACGCTCCCCCCTGGCACCAGCTTGAAATGCACAATCTGTAACTACACGGCGGATTCTCTTATTACGTTCCAACATCacatcctctctcacctgtcaCAGGCCGCCTTCAGATGCAATCACTGCCATATCAGCTTTCAGAACCACAGGGAACTCTTGCAGCATCAGGACTTACACAGCCACCATGGCCACGGTGGTGGCAGCAAACTTCACAGGGAGAGCGACAGCGAGCACTCCCCCAGGGGGGCGGAGGAAGCCCTGCAGCAGGCGGCGGCCCGCGTCGAGCTGGCCAACCGGAAGGAAGCCCTCCAGAGTCCCAAAGGATCCCTCAGCAAGGACTCCACCATCGACAGCGAGCTGGAGAAGGCTGAGAAAAAGCCCATGCTGTCAGGGTTGAAGGGGGACGGTGGCCACCCGGGCAGTAAGGCCAGCTTCTCCTACACCCGGATCAAGTCTGAGCCCTCCAGCCCCCGCTTGGCCTCCTCTCCTGTTCAGCATAACATGGGCCCCACCTACCCCATGGGGCCCTTCCTGTCCCAGTTCGCTTTCTCCCAGGACATTTCTGTCGTCCCGCAGGCTTCTGAGATTCTGGCTAAAATGTCAGAGCTGGTGCACCGGAGGCTACGCCACGGAGGGAACACGGTCTACCCTCCGGTGATCTACAGCCCCCTCATCCCCAAAGGGGCCACGTGTTTCGAATGCAATATCACCTTCAACAACCTGGAAAACTACCTGGTCCACAAAAAGCACTACTGTAACAGTCGTTGGCAGCACATGACCAAGTCGCCTGACTTCTCCAGCATCTCAGACAAGGCCGTGAGCCCCAACAGCGGCCACAGCTCAGTCAATATGCTCACCGGATGCCACCCGTCTGAGGTCACCGACAGCCACCTGATGCAGTCGGCCTGTTTGTCAGTCAACTCTCAGAGTGTTCTGGACATGATCAATGCAGGAGGGGCAGTGAAAGGCCCTGGCCCAGAGAAGGAGCTCCCGGGGCAGGTAAAGAAGGTCTCCACCACCCCGACCGGGATGGAGGAGAGGCTGAACGGGAAGCAGCAGGCAGTGGAGGGGAAGAGCCCCACCAACACGCCTCTGGTGGAGACTGACGTCAACGACCCCAACCAGACTTCCTGTGCGGCCTGCAATATCACCTTTAGCCGCCACGAGACCTACATGGTCCACAAGCAGTACTATTGTGCTACGCGTCACGACCCCCCCATGAAACGCATGTCCGCCAACAAGGTTCCGTCCATGCAGAGAACCATGAGGACCCGCAAGCGCAGAAAGATGTACGAGATGTGTCTCCCAGACCAGGACCCGAGAGGACCCTCCATTGGGCAGCCAGGGTTCCTGGGGGTCCCTCCTATGGCGAACCCCTGTACGTCCCAGGAGGCGGTGGAGAGCCTGGCCGACCGCTTTCACCCTCGCTGTGACATCTTCCCAGGGATGGTCCCCAAACACCTGGAGGCTTCCCTCACCGTCACCAAGTCTATCATGGCCCCCAACAGTAATACCACTATGGACCAGCAGGAGCTGGACGCACCCATCGATCTCAGCAAAAAGTGCTCGCCGATCCCCAATGACAAGACATCGCCAAACTCTCCCAAAAGACTGTTAGACTATCATGAATGTACAGTGTGCAAGATCAGTTTTAACAAAGTGGAGAACTACCTAGCGCATAAACAGAACTTTTGCCCTGTGACCACAGCCTCCCAGCAGCACAGTGGTGAGACCATGTTCCCAGACGTGGTGAAGAATGAAGGCAGTAATCCTGATGACGCCTACGATAAGAGCCCATGTGAGAAGAACGGCAACGATAAAATGATTGTGCAGAATGGGGGTGGAATGTTCCCCCCTCACATGGGCCCAGTGCCGGGTCTCAAGCCCTTCAGCGAGGCTCAGCTCATCCCGACTAAAGACGAGAACATGTTTCTGCCCCACTGCCTTTATCCCGGCGCAATAAAGAAGATGAAAGGTGCCGAGCAAATATCGCCCTACTTCGGGATAAAGCCGACCGATTACGTGGCCGGCGGGCTGGTCATGCAGGGCGAGAGAGAGGTGAGCAGCGAGCAGGAGCAGAGCACTAATGGAGGGGGaccagagacggggagagagcaGCCTGCTGCCAACGGCTGCCCACTCCTCAGCAAAGAGCCACTGCCCCTGCTGCCCAAAAACAGGGGCATGGTGATAGTCAACGGTGGTCACAAGCCAGAGGAGCGCTCGGGATCGGGGCCCGTCCCACCCAACCAGGATAACCAATCCCACAATCCCCAGCAGCAAGACGGCCACCCCTCACCCACGTGGGGTGCGGAGAACCCGTCCGACTCCAACGAGAACGTGTCGCCCGCGTCCAAGTCTCCGACCGAGGAGACGGTGCCCACGGTGACAAAGGGTTTGAATGGGTCGTCCCAGGCTCCGGGCAGCGGGAAGTACTGCCGCCTCTGTGACATCCAATTCAACAACCTATCAAACTTTATTACCCATAAGAAGTTTTACTGTTCGTCACATGCTGCGGAGCATGTGAAATGAACTAGTTCCTGTTTAGTTTTCCTGTCCCTTCCCACTCCCCTTTTTTCTGTTTGGGTACACTGTCGTGTCTGGAATAATGCATCACTCACGCAGTACTAAACGCTGCTTGTGGACAATCAAGAGAGGCTTCTTCTTTCATCATTTTAACACCTCATTGCAAATCATtggttaaaaaaagaaaaaatgaaTCCAGAGTTGGTGCCactttcacatttatttattttacaatcagTATTAATAGTAGTGATCTTAATTTAAAATTCAAATGAAATTTATATCAGAGTTGTTTGTAATGTTATTGTATAGTCATTCTTGTGTAGCACACATATTGTTTACACTGTAATGTAGGCTCAATGAAACGATAGAATACAAATGAGATGCATTTTAGACACAAAATAGCTACTGAAGCACTTGTCTATTCTTATTTGCTGTAACAGTTTTTGTATATGCCTAAATGTCATTTGCAGCTTTGCTATTCATGACTCGGATTCTTGGCCTTAACCCTTTGGTGGGATAGCCAGGTACAATCCAGCTGCATCTTCTGTTTTGGCATACACTTGGCTTAGCATACGTATGTGGCTGTGTCCCTGTCTCTTTTCTTCAACTCCGACGTGGATGTTTTCAGGAGGATGGCAACATTCTTGTATAGTACTCATATTTCTGTTTGCTGAACTACACTTTGGTCTCCCTTTTTAACATTTACTCTCGATGCAATACTTTGTAAATGAGGGAACATTACTGAAAGCAGTATTATGAGAGGGGGACTGCATTATATTGTACAATAATTACATTTATTGCTGTTGATGGATGTTGGTTGACGGGGGATACCGATGTAAAATAATCATTCCAATGTCCTAATTATGCGAGAGAAAAAAAGTTTCTTAAAAAACATTGTTGCTATGCATGTATATGGATGGAATAAAATTCCAGAACTGTTGGAAATCATTTTTATTTTGATGTGGTGTCATAATTAAACTGAAATCCTCAGGA
>TU265301
CGCAACTCAGTGCAGCCTCATCTCGGAGAACGCCATTGAgaaagagtgagtgaaagagagagagcgagctagagagaaatagagcagatcagaggaagagaaaagaaagagacagagcgacaTACTCTGTGAAAAAAAGTGTCCATAATTCGTCACCCTTTCTTTCTCAATTTCCATCACAAACCCTACCGGTGCTTGGATGAACCAAAACCTATCGATCAGTCAGTGCTACACCTGGATCTCCTGACCAGCTCCGAGCAGGCATGTCCCGAAGGAAGCAGAGCAACCCCAGGCAAATTAAACGTGAAGAAGATGGCAGTGGAGAAGCAGGGGAGTCAGACATGGACGGGCAGTGTGAGAAGACCAGACACCCAGCTATAGGACCAGAGGATTGGGATGGACCAAGAGAGCTGGATGCGTTCCACAAGGATGGGGAGCGTCGGATCCACAGCCGCCAGCAGCTCCCTGTGGGAACCACG

Function

NR:

description
zinc finger protein ZFPM2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971043.1 False 4999 mRNA 0.52 8 19065512 19282368
TU265301 True 479 TUCP 0.46 3 19159300 19282138

Neighbor

gene id symbol gene type direction distance location
LOC110511207 oxr1 coding downstream 41360 18826879 ~ 19024152 (-)
LOC110511312 LOC106605543 coding downstream 268143 18793985 ~ 18797369 (-)
LOC110511352 LOC106605528 coding downstream 359038 18697337 ~ 18706474 (-)
LOC110511375 NA coding downstream 388872 18633399 ~ 18676640 (-)
LOC110511506 lyric coding downstream 432265 18624581 ~ 18633247 (-)
rims2a LOC106579570 coding upstream 133686 19416054 ~ 19652601 (-)
LOC110512409 LOC106605396 coding upstream 372915 19655283 ~ 19667465 (-)
LOC110512480 flot1 coding upstream 480008 19762376 ~ 19785561 (-)
LOC110512516 LOC106579712 coding upstream 560342 19827342 ~ 19851108 (-)
LOC110512609 LOC106579779 coding upstream 595129 19877497 ~ 19895848 (-)
G231893 NA non-coding downstream 30261 19034953 ~ 19035251 (-)
G231886 NA non-coding downstream 35619 19029435 ~ 19029893 (-)
G231771 NA non-coding downstream 199206 18865221 ~ 18866306 (-)
G231757 NA non-coding downstream 247116 18817540 ~ 18818396 (-)
G231756 NA non-coding downstream 248095 18817043 ~ 18817417 (-)
G232835 NA non-coding upstream 105664 19388032 ~ 19388986 (-)
G232802 NA non-coding upstream 122551 19404919 ~ 19408499 (-)
G232873 NA non-coding upstream 188838 19471206 ~ 19471551 (-)
G232883 NA non-coding upstream 203444 19485812 ~ 19486777 (-)
G232898 NA non-coding upstream 226811 19509179 ~ 19510193 (-)
G231652 rn146 other downstream 463637 18599730 ~ 18601875 (-)
LOC110503747 lars2 other downstream 934458 18093704 ~ 18154474 (-)
LOC110505118 LOC106579600 other downstream 1087603 17975160 ~ 17985544 (-)
G229707 NA other downstream 2017168 17043792 ~ 17048344 (-)
G229380 LOC106605502 other downstream 2215313 16849972 ~ 16850199 (-)
G232980 NA other upstream 365718 19648086 ~ 19648629 (-)
G233052 LOC106605397 other upstream 473836 19756204 ~ 19757908 (-)
G233513 LOC106561082 other upstream 1269415 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 1366403 20648378 ~ 20652052 (-)
G232065 NA non-coding downstream 28317 19130646 ~ 19130983 (-)
G232064 NA non-coding downstream 29544 19129473 ~ 19129756 (-)
G232063 NA non-coding downstream 32269 19126692 ~ 19127031 (-)
G232062 NA non-coding downstream 37356 19121744 ~ 19121944 (-)
G232059 NA non-coding downstream 42732 19116090 ~ 19116568 (-)

Expression


Co-expression Network