LOC110512409 (LOC106605396)


Basic Information

Item Value
gene id LOC110512409
gene name LOC106605396
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19655283 ~ 19667465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592817.2
AATGCAATTTCTCCTTCTGCGTATTTTACTGCAATGTAATAAACATAAAAAAGTTGTCATGTCCCACAAGAAGTCTAATTTAGTAAGATATCTGAAGCCCAAAGTACAGTGATAATCAGTCCACATGGTGTCACCAAAGATCTTTGGTAATGTTCTGTCTGGTCGCTGTAAGCGCAATCAACAAACACACTTCCGTCAAATAAGGGCGGATATTGCCCTCAACATCCGGTAGGTGAGGTCACACGTAAACACATGGCCGTGCGAAACATTTTACCGTGTTACATTTTTGGTGGAAGAAGTATAGAGTTTTATACACATTCACGCAATGAAAGTTAAAGTCCTCTCCAGGAATCCGGACGACTATGTCCGTGAGACGAAGTTGGATATCCAGCGTGtaccaAGAAATTACGACCCGTCCCTCCATCCGTTCGAGGTGCCAAGAGAATACACCCGTGCCCTGAATGCCACCAAGCTGGAGCGCGTGTTCGCCAAGCCGTTCCTGGCTTCTCTGGACGGCCACAGGGATGGGGTgaactgcatggccaagcacccCAAGAGCCTCTCCACAATGCTGTCCGGCTCCTGCGATGGAGAGCTGAAGGTGTGGAATCTAACCAAACGTGAGTGTGTTCGTACACTCCAGGCCCATGAAGGCTTTGTCAGGGGGATGGTCGTCCGCTTCTGTGGCACCTCCTTCTTTACGGTTGGTGATGACAAGACTATAAAACAGTGGAAGATGGAGACTCCCAGCTACGGAGAGGAAGAGGAACCTCTCAATACTATTCTTGGAAAGTCTGTGTTCACCAGCATCGACCACCACCAGaaggagggtgtgtttgtgacGTGTGGCCAGCAGGTGGATATCTGGGATGAGCAACGCAGCAGCCCCATCCGCTCCTTCTCCTGGGGCGTGGACAGTTTCAGCTGCGTCCGCTTCAACCCTGTAGAGACTGAACTTCTAGCAAGTTGTGCCTCTGACAGAAGTATTGTGCTGTATGACATGAGGGAAGCGACACCTCTTAAAAAGGTAATCATGAATATGAGGAGCAACACTTTGTGCTGGAATCCCATGGAAGCCTATAACTTTACCTGCTCTAATGAAGATTACAATCtgtatacatatgatatgaggtACCTGGACAAGCCTTTCACCGTCCACATGGACCATGTCTCAGCCGTGCTGGATGTAGACTACTCTCCAACTGGTAAGGAGTTTGTCTCGGCCAGCTTTGACAAGACCATCCGCATCTTCCCCAAAGACAGTGGCCACAGCAGGGAGGTGTACCACACCAAGCGCATGCAGCACGTCATCTCCATAAAGTGGTCGTCAGACAACAAGTACATCCTGAGTGCTTCAGATGAGATGAACATCCGACTGTGGAAGGCCAACGCTGCTGAGAAGTTGGGATTGCTGGCTCCTAGGGAGAAGGCAGCTGTGAACTACAGCCAGAAGCTGAAGGAGAAGTTCCAGCACCACCCTCAGATCCGCCGCATCTCGCGCCACCGCCACCTGCCAAAGTCCATCTACGGCCAGAGCAAGGAGCTGCGTGTCATGAAGGAGGCTCGCCGCAGGAAGGAGAGGAACGTACGCAAGCACAGCAAGCCTGGCTCCATGCCCgtggtgacagagaaagagaaacatgtgGTCACCGTTGTGAACTAGGACGCCAGTGACAGTATGGCGTTGGAGGACTGAAGGACTACTCTGCCTCTACAAACACTTGGGCCACGTTCAGACATACACAGCTAGTGTTGCAAAATGTCGGGATGTTTCCCAAATTCctctggttttccagaaattccACGTACTTGGATTTCCTGCTTGGTCCCTCATGGTTCCaggacacaggaggttggtggcaccttaattggggaggatgggcttgcGGTAATAACTGGAGCAGAATGggatcaaatacatggtttccatgtgtttgatgtcattccatttgctctgttccggccattattatgagccgtcctcccctcagcagcctcctgtattCCAGGAATATTCCAAACTGGATTTCTGACAAACCTGGCCACTTGGGAAAgataccagaattttgcaaccctgcaCACAATGCTGTGGATCCTTTCAGTTATATTCATGACATTCTAATCTGCAACGTTCAAAAGACTGCACCCTCCTGAACACAACCCTATCTAAAACTTTGAAAGAACTCATTCCACCTCTCCAAGGCTTATTACAAAAGAGAAATATGGGTCAATATTGTGAAGTTTGATGACATAAGTGTCCCAACTGTCATGGTAAAACTTCCTACCCCCAGATGATGACTACATGAATGCTATCGTTGGAACAGTAATTTGGGGATGATATTGTATTGAAATAAGAATACACTAGAAACCAAGAAGAACAACATGCGTCAAATATCACCAGAAGGTTTATTTTAGAAAATATCTTAAATGTTTGTCCTCCCTACACCACCACATACCTTCAGCTATTGTTTACTGATTCAGTAACCTTAGATTGCATGATGCTAAGGGTTGACTATATTGACAGTGATTTTTGTATTTATTGATACACTGCTAATAAAGATGTGGTATGATA

Function

NR:

description
DDB1- and CUL4-associated factor 13-like

GO: NA

KEGG:

id description
K11806 DCAF13, WDSOF1; DDB1- and CUL4-associated factor 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592817.2 True 2572 mRNA 0.47 11 19655283 19667465

Neighbor

gene id symbol gene type direction distance location
rims2a LOC106579570 coding downstream 2717 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 coding downstream 372915 19065512 ~ 19282368 (-)
LOC110511207 oxr1 coding downstream 631131 18826879 ~ 19024152 (-)
LOC110511312 LOC106605543 coding downstream 857914 18793985 ~ 18797369 (-)
LOC110511352 LOC106605528 coding downstream 948809 18697337 ~ 18706474 (-)
LOC110512480 flot1 coding upstream 94911 19762376 ~ 19785561 (-)
LOC110512516 LOC106579712 coding upstream 175245 19827342 ~ 19851108 (-)
LOC110512609 LOC106579779 coding upstream 210032 19877497 ~ 19895848 (-)
g6f-like-b g6f-like-b coding upstream 247055 19914520 ~ 19931740 (-)
LOC110512652 riiad1 coding upstream 347127 20014592 ~ 20018502 (-)
G232978 NA non-coding downstream 11292 19643780 ~ 19643991 (-)
G232976 NA non-coding downstream 12652 19642393 ~ 19642631 (-)
G232972 NA non-coding downstream 20141 19634807 ~ 19635142 (-)
G232971 NA non-coding downstream 20570 19633964 ~ 19634713 (-)
G233001 NA non-coding upstream 6931 19674396 ~ 19675774 (-)
G232999 NA non-coding upstream 68619 19736084 ~ 19740224 (-)
G233052 LOC106605397 non-coding upstream 88739 19756204 ~ 19757908 (-)
G233080 NA non-coding upstream 144298 19811763 ~ 19813710 (-)
G233082 LOC106605400 non-coding upstream 150828 19818293 ~ 19821202 (-)
G232980 NA other downstream 6654 19648086 ~ 19648629 (-)
G231652 rn146 other downstream 1053408 18599730 ~ 18601875 (-)
LOC110503747 lars2 other downstream 1524229 18093704 ~ 18154474 (-)
G233513 LOC106561082 other upstream 884318 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 981306 20648378 ~ 20652052 (-)
G234224 LOC106605437 other upstream 1511132 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 1778023 21438546 ~ 21455972 (-)

Expression


Co-expression Network