LOC110512480 (flot1)


Basic Information

Item Value
gene id LOC110512480
gene name flot1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19762376 ~ 19785561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971255.1
GGGGCGTGGTCAGCATTTGCACTCCATTAAGTCCGTTAAGTAACATTTTGTTGCAATTCCAGTATTTGAGCCAGTCGTCAATTCACGTAAATCGGAGTATATTGAAACCATCTGGAGTGTACACGACGATTTAGGGAAACATATCTTTAGGGAGAATCGATTGCTCTTAGGTCCAAATCAAGATGTTCTACACATGTGGACCCAATGAAGCCATGGTGGTGTCTGGCTTTGGTCGTTCCCCTCCTCTAATGATCGCTGGAGGTAGAGTGTTTGTCCTCCCCTGTATTCAACAGATCCAGAGGATCACTCTGAACACCCTGACTCTGAATGTGAAGAGTGATAAGGTGTACACCCGTCATGGAGTGCCCATCTCTGTCACTGGCATCGCCCAAGTGAAGATCCAGGGTCAGAACAAGGAGATGCTGGCCACGGCCTGTCAGATGTTCATGGGGAAGTCTGAGGCTGAGGTCTCCAACATCGCCCTGGAAACACTGGAGGGGCACCAGAGGGCCATCATCGCCCATCTGACTGTTGAGGAGATCTACCAGGACCGTAAGAAGTTTTCTGAGCAGGTGTTCAAGGTGGCCTCCTCTGACCTGGTCAACATGGGCATCGGCGTGGTCAGCTACACGCTCAAAGACGTTCACGACGACCAGGACTACCTCACCTCCCTGGGTAAAGCTAGGACAGCTCAGGTGCAGAAGGATGCCAGGATCGGAGAGGCTCAGTACAAACGAGACGCGGTGATCCGTGAGGCCCAGGCCATGCAGGAGAAGGTGTCGGCCCAGTATCTGAATGAGATCGAGATGGCCAAAGCCCAGAGAGACTACGAGCTGAAGAAGGCTTCCTACGACTATGAGGTCAACACCAAGAAGGCAGAGTCTGAGATGGCATATCAGCTGCAGGTGGCGAAGACGAAGCAGCGGATTGAGGAGGAGACGATGCAGGTGAAGGTGGTGGAGAGGTCTCAGCAGATCATGCTGCAGGAGCAGGAGATCACCCGCAAGGAGATGGAGCTGGAGGCCACGGTGAAGAAGCCTGCTGAGGCCGAGAGATACCGTCTGGAGAGACTGGCTGAGGCAGAACGtgCACAGCTCATCATGGAGGCTGAGGCAGAGGCAGAGTCCATCAGAATGAGGGGCGATGCTGAGGCGTTTGCTCTGGAGGCTAAAGGTCGTGCCGAGGCAGAGCAGATGGCTAAGAAGGCTGAGGCTTTTAAACAGTACGGGGAGGGGGCCATGGTGGACATGCTGCTGGAGAAACTACCACTGATAGCAGAGGAGATCAGCAGGCCCCTCTCCATGGCCCAGAAGGTTACCATGGTTTCCAGCGGCGGGGGTGAGGTGGGCGCGGCCAAGCTGACCGGAGAGGTTCTGGACATCATGACCAGACTACCAGCTGCCGTGGAGAAACTCACTGGAATCAACAtctcacagGTTGGGCTGTCCACCCGAATGGGCTGAGAATGGAGCCTAGTTATTGAGACAGCCTGCACCGCCAGACCAGGAACTCCATACTGCCTCCTTGTGCCTATAATTATTATTACCTAGTGTagttgtctgtctgcatgtctgtctgcatgtctgtctgcatGCCTGTCTCCTTAGTtcatgtctgtctgcatgtctgtctgcatgcctgtctccttagggcatgtctgtctgcatgtctgtctgcatgcctgtctccttagggcatgtctgtctgcatgcctgtctccttagggcatgtctgtctgcatGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGTCTCCCGCCAGACCAGGAACTCCATACTGCCTCCTTGTGCCTATAATTATTATTACCTAGTGTAGTTGTCTGTCTGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGTCTCAACACTCTTATTCGACCTCCCCTCTTGCTTCCTGGTCCTTGTTGGCACTGATCTGAAAACAGAGGATGGTTCCAAGCTGTATGTTGTAAGCCTACTGGGGGAGTGTGTGTCCTGGTCATTCATAACTGGTTAGTTCAGCTTGGATGAAGGAAAGAAAAGCACTTTGGACTAGCATGACACGGCCTTCGTCGTTCTGGTAGTAACTCCGCCTCCTCCACCATTCTGTACTCTTCTCTCCGTCCGCTattcagtgtgttttaatcacTGCTTCAAGCctgcctctgtctccctccattacAGGTTTGGGTCCATATAAACTGTTCAACTGTCACATAGTTGTAATTCCTAGAATGTTATTTCATTGGGATGTGGTTGTGTTTGAGAAATGATGTAGGAAATAATCGTGTCAGTATGAGGTCATCCATGTTATTGTTGGGTTTGTCAGCTGATTGTTTTGTCAACATTTGCagttctagaaggttctcagCATCGGAAGCTTGCTTAGTTGCTATCAATTGCTTTGAAAATGAAGAAATGCTTTTTACTTTCACTGGGAAGAAATGAAGAAATGTCCACAATCAGAATTTAGATAATGGTAgtcatttttatacatgacttCTGCATGCCGTACAGCATTCCAGTACCTCTGTCTACCACCGTATGGACAAAGTGGTTTTCCACTATGTGCTCCCCTGACAGTAGACTCTAGATCAGTCTATCTACTCATATCTCTAAGATGACACTCTAGAATGGCCAGTGCCTTGTTTTAGAGTCTAATTAATCATATCACTACAAGCCATATTACAATAGAAGCCAAGTTACATGCAGATTATGCTGTTTTTTGTAAGTCTGTTTTATGATTTGTGGGCTTTTTGCCATGACTCTGCCATTTGTGGGGGATGACATCACGAACTATATGATGGGTTGGCACTAAACCTCTTCTGTGTTGGTACAATACTGGCATAGACACAATCAATGGAGTACCGACTGATGGTACCTAATCTAATTACCAAAGCAATAAACAAGGAACTACAGATTCTGTTACTATACTGTTGTTTATCCAACAGACAGATTGTCATGTACACCATTATGGCTTAGTTCCAGTGTGTTTCTAAACCCTAGACTTATTAGACAGACAGGCCTTCGATCAGAGCTTCTACTGTGCTACAACTGTATAAAGGTGGAGATATTCTGTGAAGTGATtggaaggaagagggagggagcagaCTGGGGATTTCCTGCTGAAGGCTAACCTCAGAGGTCTCTCTAGGTCAGGTGTACTGTCAGTCACGTGGTGTCTGGTGTTGTTTGAGGTGAAGGTATGTGTGTAGAAGAGGGGaatgggtgccagtctgtttctgctctcttttCAAATCCTTATAGAATTGCCATGCCAAACATGTTTCCCTTGACAATGACAATGGAACAGGCAAAAACACTAAAGTAGTGGACTTCCATTAAGTTGTATGGTCCAGTGGGGTATACAGGAACCTTCTATAGATTGGAGTAGACAATATACATTTGAATTAGGAGCTATCCTTTCATATCGTAATATTATCATTAGAATGGGGTATTTTTGTCGTGCTGGTTTGATCCTTTTGTAGTACAGGGTTGTTGTAGTTGTTAGGGACTTGTTCtataccatagaaatagaatccttCTAATTCTATACCGCTGCTCAGGATTCTAGAAGCTACTTCTCTCTACCGGATTGAATACTACCCCAAAGCTTACATGCGATCTGGCTGTCTATGCATTTTGTTACCAAGTGCCTGACTAAGTTGAAAGATTCCCATTTTTCTCTCAACCTAAAGGCTAAACTATCACACCAGGTTAAACATGAACAATCTAGAGGCATGCTATGTCCTAAAGATATTAATGAAAGCCAATTTCGTCAAACAAATTCTACTGCTTTCACTTATGCACACACCTGTATATTACATCAGTCAATGATTTGTGACTTCTAGCCTTTTTCTGTACTGTAGCTGCACTTAGTtaaatgtgatttctgtgttTATTTCCATCTATACTTTGTTGACTTGCCAAAATAATCCTGGCCTCCCGTGTAGTGTAAATTTAGTATGCAAGTGCACTAAGTTATAAATATTTGGAATGAAATTATTGTAACAACATATAAACACAAACTCTGATTTCCTAACGTAAA
>XM_036971271.1
TCAGCATTTGCACTCCATTAAGTCCGTTAAGTAACATTTTGTTGCAATTCCAGTATTTGAGCCAGTCGTCAATTCACGTAAATCGGAGTATATTGAAACCATCTGGAGTGTACACGACGATTTAGGGAAACATATCTTTAGGGAGAATCGATTGCTCTTAGGTCCAAATCAAGATGTTCTACACATGTGGACCCAATGAAGCCATGGTGGTGTCTGGCTTTGGTCGTTCCCCTCCTCTAATGATCGCTGGAGGTAGAGTGTTTGTCCTCCCCTGTATTCAACAGATCCAGAGGATCACTCTGAACACCCTGACTCTGAATGTGAAGAGTGATAAGGTGTACACCCGTCATGGAGTGCCCATCTCTGTCACTGGCATCGCCCAAGTATGGACTTAGAAGTCAACACCCCACCCAGTGTACATGTGAAAGTAGCCATGTATTCTGATTGGATAGGTGAAGATCCAGGGTCAGAACAAGGAGATGCTGGCCACGGCCTGTCAGATGTTCATGGGGAAGTCTGAGGCTGAGGTCTCCAACATCGCCCTGGAAACACTGGAGGGGCACCAGAGGGCCATCATCGCCCATCTGACTGTTGAGGAGATCTACCAGGACCGTAAGAAGTTTTCTGAGCAGGTGTTCAAGGTGGCCTCCTCTGACCTGGTCAACATGGGCATCGGCGTGGTCAGCTACACGCTCAAAGACGTTCACGACGACCAGGACTACCTCACCTCCCTGGGTAAAGCTAGGACAGCTCAGGTGCAGAAGGATGCCAGGATCGGAGAGGCTCAGTACAAACGAGACGCGGTGATCCGTGAGGCCCAGGCCATGCAGGAGAAGGTGTCGGCCCAGTATCTGAATGAGATCGAGATGGCCAAAGCCCAGAGAGACTACGAGCTGAAGAAGGCTTCCTACGACTATGAGGTCAACACCAAGAAGGCAGAGTCTGAGATGGCATATCAGCTGCAGGTGGCGAAGACGAAGCAGCGGATTGAGGAGGAGACGATGCAGGTGAAGGTGGTGGAGAGGTCTCAGCAGATCATGCTGCAGGAGCAGGAGATCACCCGCAAGGAGATGGAGCTGGAGGCCACGGTGAAGAAGCCTGCTGAGGCCGAGAGATACCGTCTGGAGAGACTGGCTGAGGCAGAACGtgCACAGCTCATCATGGAGGCTGAGGCAGAGGCAGAGTCCATCAGAATGAGGGGCGATGCTGAGGCGTTTGCTCTGGAGGCTAAAGGTCGTGCCGAGGCAGAGCAGATGGCTAAGAAGGCTGAGGCTTTTAAACAGTACGGGGAGGGGGCCATGGTGGACATGCTGCTGGAGAAACTACCACTGATAGCAGAGGAGATCAGCAGGCCCCTCTCCATGGCCCAGAAGGTTACCATGGTTTCCAGCGGCGGGGGTGAGGTGGGCGCGGCCAAGCTGACCGGAGAGGTTCTGGACATCATGACCAGACTACCAGCTGCCGTGGAGAAACTCACTGGAATCAACAtctcacagGTTGGGCTGTCCACCCGAATGGGCTGAGAATGGAGCCTAGTTATTGAGACAGCCTGCACCGCCAGACCAGGAACTCCATACTGCCTCCTTGTGCCTATAATTATTATTACCTAGTGTagttgtctgtctgcatgtctgtctgcatgtctgtctgcatGCCTGTCTCCTTAGTtcatgtctgtctgcatgtctgtctgcatgcctgtctccttagggcatgtctgtctgcatgtctgtctgcatgcctgtctccttagggcatgtctgtctgcatgcctgtctccttagggcatgtctgtctgcatGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGTCTCCCGCCAGACCAGGAACTCCATACTGCCTCCTTGTGCCTATAATTATTATTACCTAGTGTAGTTGTCTGTCTGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGTCTCAACACTCTTATTCGACCTCCCCTCTTGCTTCCTGGT
>XM_036971265.1
GGTCAGCATTTGCACTCCATTAAGTCCGTTAAGTAACATTTTGTTGCAATTCCAGTATTTGAGCCAGTCGTCAATTCACGTAAATCGGAGTATATTGAAACCATCTGGAGTGTACACGACGATTTAGGGAAACATATCTTTAGGGAGAATCGATTGGTCCAAATCAAGATGTTCTACACATGTGGACCCAATGAAGCCATGGTGGTGTCTGGCTTTGGTCGTTCCCCTCCTCTAATGATCGCTGGAGGTAGAGTGTTTGTCCTCCCCTGTATTCAACAGATCCAGAGGATCACTCTGAACACCCTGACTCTGAATGTGAAGAGTGATAAGGTGTACACCCGTCATGGAGTGCCCATCTCTGTCACTGGCATCGCCCAAGTGAAGATCCAGGGTCAGAACAAGGAGATGCTGGCCACGGCCTGTCAGATGTTCATGGGGAAGTCTGAGGCTGAGGTCTCCAACATCGCCCTGGAAACACTGGAGGGGCACCAGAGGGCCATCATCGCCCATCTGACTGTTGAGGAGATCTACCAGGACCGTAAGAAGTTTTCTGAGCAGGTGTTCAAGGTGGCCTCCTCTGACCTGGTCAACATGGGCATCGGCGTGGTCAGCTACACGCTCAAAGACGTTCACGACGACCAGGACTACCTCACCTCCCTGGGTAAAGCTAGGACAGCTCAGGTGCAGAAGGATGCCAGGATCGGAGAGGCTCAGTACAAACGAGACGCGGTGATCCGTGAGGCCCAGGCCATGCAGGAGAAGGTGTCGGCCCAGTATCTGAATGAGATCGAGATGGCCAAAGCCCAGAGAGACTACGAGCTGAAGAAGGCTTCCTACGACTATGAGGTCAACACCAAGAAGGCAGAGTCTGAGATGGCATATCAGCTGCAGGTGGCGAAGACGAAGCAGCGGATTGAGGAGGAGACGATGCAGGTGAAGGTGGTGGAGAGGTCTCAGCAGATCATGCTGCAGGAGCAGGAGATCACCCGCAAGGAGATGGAGCTGGAGGCCACGGTGAAGAAGCCTGCTGAGGCCGAGAGATACCGTCTGGAGAGACTGGCTGAGGCAGAACGtgCACAGCTCATCATGGAGGCTGAGGCAGAGGCAGAGTCCATCAGAATGAGGGGCGATGCTGAGGCGTTTGCTCTGGAGGCTAAAGGTCGTGCCGAGGCAGAGCAGATGGCTAAGAAGGCTGAGGCTTTTAAACAGTACGGGGAGGGGGCCATGGTGGACATGCTGCTGGAGAAACTACCACTGATAGCAGAGGAGATCAGCAGGCCCCTCTCCATGGCCCAGAAGGTTACCATGGTTTCCAGCGGCGGGGGTGAGGTGGGCGCGGCCAAGCTGACCGGAGAGGTTCTGGACATCATGACCAGACTACCAGCTGCCGTGGAGAAACTCACTGGAATCAACAtctcacagGTTGGGCTGTCCACCCGAATGGGCTGAGAATGGAGCCTAGTTATTGAGACAGCCTGCACCGCCAGACCAGGAACTCCATACTGCCTCCTTGTGCCTATAATTATTATTACCTAGTGTagttgtctgtctgcatgtctgtctgcatgtctgtctgcatGCCTGTCTCCTTAGTtcatgtctgtctgcatgtctgtctgcatgcctgtctccttagggcatgtctgtctgcatgtctgtctgcatgcctgtctccttagggcatgtctgtctgcatgcctgtctccttagggcatgtctgtctgcatGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGTCTCCCGCCAGACCAGGAACTCCATACTGCCTCCTTGTGCCTATAATTATTATTACCTAGTGTAGTTGTCTGTCTGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGTCTCAACACTCTTATTCGACCTCCCCTCTTGCTTCCTGGT

Function

symbol description
flot1 Enables protease binding activity. Involved in several processes, including positive regulation of cell-cell adhesion; positive regulation of cellular component organization; and protein localization to membrane. Located in several cellular components, including basolateral plasma membrane; centriolar satellite; and uropod. Part of flotillin complex. Is active in dopaminergic synapse. Colocalizes with COP9 signalosome and cortical actin cytoskeleton.

NR:

description
flotillin-1-like

GO: NA

KEGG:

id description
K07192 FLOT; flotillin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971255.1 False 4237 mRNA 0.47 12 19762376 19785561
XM_036971271.1 False 2169 mRNA 0.53 12 19764504 19785552
XM_036971265.1 True 2095 mRNA 0.54 12 19764504 19785554

Neighbor

gene id symbol gene type direction distance location
LOC110512409 LOC106605396 coding downstream 94911 19655283 ~ 19667465 (-)
rims2a LOC106579570 coding downstream 109810 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 coding downstream 480008 19065512 ~ 19282368 (-)
LOC110511207 oxr1 coding downstream 738224 18826879 ~ 19024152 (-)
LOC110511312 LOC106605543 coding downstream 965007 18793985 ~ 18797369 (-)
LOC110512516 LOC106579712 coding upstream 57149 19827342 ~ 19851108 (-)
LOC110512609 LOC106579779 coding upstream 91936 19877497 ~ 19895848 (-)
g6f-like-b g6f-like-b coding upstream 128959 19914520 ~ 19931740 (-)
LOC110512652 riiad1 coding upstream 229031 20014592 ~ 20018502 (-)
dnah5 LOC106579813 coding upstream 238349 20023910 ~ 20090697 (-)
G233052 LOC106605397 non-coding downstream 4468 19756204 ~ 19757908 (-)
G232999 NA non-coding downstream 22152 19736084 ~ 19740224 (-)
G233001 NA non-coding downstream 86602 19674396 ~ 19675774 (-)
G232978 NA non-coding downstream 118385 19643780 ~ 19643991 (-)
G233080 NA non-coding upstream 26202 19811763 ~ 19813710 (-)
G233082 LOC106605400 non-coding upstream 32732 19818293 ~ 19821202 (-)
G233090 NA non-coding upstream 66671 19852232 ~ 19852446 (-)
G233064 NA non-coding upstream 77737 19863298 ~ 19863882 (-)
G232980 NA other downstream 113747 19648086 ~ 19648629 (-)
G231652 rn146 other downstream 1160501 18599730 ~ 18601875 (-)
G233513 LOC106561082 other upstream 766222 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 863210 20648378 ~ 20652052 (-)
G234224 LOC106605437 other upstream 1393036 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 1659927 21438546 ~ 21455972 (-)
G234600 NA other upstream 1684100 21469661 ~ 21469945 (-)

Expression


Co-expression Network