LOC110512558


Basic Information

Item Value
gene id LOC110512558
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19852621 ~ 19857677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592869.2
TAATGTAGGTAGCCCGTGAATGGCCTCACACGCCAGTACAGTAGATGGCGGTATACGCGAACTGACAACCAAATCCGAACGAAGAAGAAGAACAGACGTAAACAAAGAGCACGTCGTACATATTCATTCAAACGAGAGCAGGTCCACTGACGGTTCAACCACAGCGTCAGAAATGCCGATATGGAGGTGGACTACAAGCAGAACTACACAAATCTCAAACGCAAATTGAAATTCATGGTTTATGAGCAGGAGTGTTTTCAGGAAGAGCTCAGAAGATCCCAGAAGAAGCTGCTCAGAGTGTCCAGAGATAAAAGTTTTCTGTTGGACCGATTGTTACAATACGAGCGGGTGGACGAGGACTCCTCAGATTCTGATGCCACTGCCTCTTCTGAGAACagcgaaggagagggagagagacggaggaaagAAGTGGGGATGCAGCATGCCAGCAACACAGACAATATTTCAAATTGCACTCTTTCTATTACTGCACTCTCTCCATCTTTGCCATTCTCACTATCTCACTAtttaagaacagatatagcccttggttcaccccagatctgactgcccttgaccatcacaaaaacatcctgtggcgttctgcattagcatcgaatagcccccgcgacaagcaacttttcagggaagtcaggaaccaatatactcagtcagttaggaaagctaaggctagcagAAATTTGAATCCTGTAGCACAGTGTCCCAAAAAGTTtttggacactgtaaagtccatggagaataagagcacatcctcccagctgcccactgcactgaggctaggaaacactgtcaccactgataaatctacgataatcgatactttcaataagcatttttc
>XM_021592877.2
AATGTAGGTAGCCCGTGAATGGCCTCACACGCCAGTACAGTAGATGGCGGTATACGCGAACTGACAACCAAATCCGAACGAAGAAGAAGAACAGACGTAAACAAAGAGCACGTCGTACATATTCATTCAAACGAGAGCAGGTCCACTGACGGTTCAACCACAGCGTCAGAAATGCCGATATGGAGGTGGACTACAAGCAGAACTACACAAATCTCAAACGCAAATTGAAATTCATGGTTTATGAGCAGGAGTGTTTTCAGGAAGAGCTCAGAAGATCCCAGAAGAAGCTGCTCAGAGTGTCCAGAGATAAAAGTTTTCTGTTGGACCGATTGTTACAATACGAGCGGGTGGACGAGGACTCCTCAGATTCTGATGCCACTGCCTCTTCTGAGAACagcgaaggagagggagagagacggagGAGAAGAAGTAGCCCAGGTGTAGGCCTTCCTtcatcctcccatctctctctcctctctcgttctgGAGTGAACCCTCTCCAGTCGTCCGTCAGTACCCCTACCTCAACACAGTGGTGGCCCCTTTAGCAGCCAACTTCCCAGCGGGCCCGACTGCCCCTCCCACATCCAGCGCCTCGTTCAACTGGGTGCCCAGGCAGATGCTGAGTGGAGACACGgcggaggaagagggagagagcgacgGAGACTCAGACAGAGGAGACGACAACaggggggaaggagaagaggCTGACCTTGTCATTGATATCCCCAAcgagtgaagtgtgtgtgtgtgtaaaggattGTTTGAAAGAGTGTGTAAGACCATAATGTGAGTCTGTGGATTCAACCCCTCCCACTGTCAAATGCTTAGCCAAGCTCCCCCCAGTGGACCTTCAGGTTACTGCAACAATATCTCTCTCTAAGCAATGTGACCTGTCATAATAATGTTACTAATTGGCTCCTTTAATGTCATTTTACTGCCTTCTACTGTAATACAAGTCATGGAAGAAATGGTATTGACAGCATGGACAGCTACAGGACTGCTTACATGTAGCACCTACCTTTTTATAGGAAACTGTCAAATTTTGAATTTTCTGTTGGagatcaaataaaattttatttgtcacatttgtcacata
>XM_021592879.2
AATGTAGGTAGCCCGTGAATGGCCTCACACGCCAGTACAGTAGATGGCGGTATACGCGAACTGACAACCAAATCCGAACGAAGAAGAAGAACAGACGTAAACAAAGAGCACGTCGTACATATTCATTCAAACGAGAGCAGGTCCACTGACGGTTCAACCACAGCGTCAGAAATGCCGATATGGAGGTGGACTACAAGCAGAACTACACAAATCTCAAACGCAAATTGAAATTCATGGTTTATGAGCAGGAGTGTTTTCAGGAAGAGCTCAGAAGATCCCAGAAGAAGCTGCTCAGAGTGTCCAGAGATAAAAGTTTTCTGTTGGACCGATTGTTACAATACGAGCGGGTGGACGAGGACTCCTCAGATTCTGATGCCACTGCCTCTTCTGAGAACagcgaaggagagggagagagacggaggaaagAAGAGAAGAAGTAGCCCAGGTGTAGGCCTTCCTtcatcctcccatctctctctcctctctcgttctgGAGTGAACCCTCTCCAGTCGTCCGTCAGTACCCCTACCTCAACACAGTGGTGGCCCCTTTAGCAGCCAACTTCCCAGCGGGCCCGACTGCCCCTCCCACATCCAGCGCCTCGTTCAACTGGGTGCCCAGGCAGATGCTGAGTGGAGACACGgcggaggaagagggagagagcgacgGAGACTCAGACAGAGGAGACGACAACaggggggaaggagaagaggCTGACCTTGTCATTGATATCCCCAAcgagtgaagtgtgtgtgtgtgtaaaggattGTTTGAAAGAGTGTGTAAGACCATAATGTGAGTCTGTGGATTCAACCCCTCCCACTGTCAAATGCTTAGCCAAGCTCCCCCCAGTGGACCTTCAGGTTACTGCAACAATATCTCTCTCTAAGCAATGTGACCTGTCATAATAATGTTACTAATTGGCTCCTTTAATGTCATTTTACTGCCTTCTACTGTAATACAAGTCATGGAAGAAATGGTATTGACAGCATGGACAGCTACAGGACTGCTTACATGTAGCACCTACCTTTTTATAGGAAACTGTCAAATTTTGAATTTTCTGTTGGagatcaaataaaattttatttgtcacatttgtcacata
>XM_021592870.2
GAATGGCCTCACACGCCAGTACAGTAGATGGCGGTATACGCGAACTGACAACCAAATCCGAACGAAGAAGAAGAACAGACGTAAACAAAGAGCACGTCGTACATATTCATTCAAACGAGAGGTCCACTGACGGTTCAACCACAGCGTCAGAAATGCCGATATGGAGGTGGACTACAAGCAGAACTACACAAATCTCAAACGCAAATTGAAATTCATGGTTTATGAGCAGGAGTGTTTTCAGGAAGAGCTCAGAAGATCCCAGAAGAAGCTGCTCAGAGTGTCCAGAGATAAAAGTTTTCTGTTGGACCGATTGTTACAATACGAGCGGGTGGACGAGGACTCCTCAGATTCTGATGCCACTGCCTCTTCTGAGAACagcgaaggagagggagagagacggaggaaagAAGTGGGGATGCAGCATGCCAGCAACACAGACAATATTTCAAATTGCACTCTTTCTATTACTGCACTCTCTCCATCTTTGCCATTCTCACTATCTCACTAtttaagaacagatatagcccttggttcaccccagatctgactgcccttgaccatcacaaaaacatcctgtggcgttctgcattagcatcgaatagcccccgcgacaagcaacttttcagggaagtcaggaaccaatatactcagtcagttaggaaagctaaggctagcagAAATTTGAATCCTGTAGCACAGTGTCCCAAAAAGTTtttggacactgtaaagtccatggagaataagagcacatcctcccagctgcccactgcactgaggctaggaaacactgtcaccactgataaatctacgataatcgatactttcaataagcatttttc
>XM_036971356.1
GCGGTATACGCGAACTGACAACCAAATCCGAACGAAGAAGAAGAACAGACGTAAACAAAGAGCACGTCGTACATATTCATTCAAACGAGAGGTCCACTGACGGTTCAACCACAGCGTCAGAAATGCCGATATGGAGGTGGACTACAAGCAGAACTACACAAATCTCAAACGCAAATTGAAATTCATGGTTTATGAGCAGGAGTGTTTTCAGGAAGAGCTCAGAAGATCCCAGAAGAAGCTGCTCAGAGTGTCCAGAGATAAAAGTTTTCTGTTGGACCGATTGTTACAATACGAGCGGGTGGACGAGGACTCCTCAGATTCTGATGCCACTGCCTCTTCTGAGAACagcgaaggagagggagagagacggaggaaagAAGAGAAGAAGTAGCCCAGGTGTAGGCCTTCCTtcatcctcccatctctctctcctctctcgttctgGAGTGAACCCTCTCCAGTCGTCCGTCAGTACCCCTACCTCAACACAGTGGTGGCCCCTTTAGCAGCCAACTTCCCAGCGGGCCCGACTGCCCCTCCCACATCCAGCGCCTCGTTCAACTGGGTGCCCAGGCAGATGCTGAGTGGAGACACGgcggaggaagagggagagagcgacgGAGACTCAGACAGAGGAGACGACAACaggggggaaggagaagaggCTGACCTTGTCATTGATATCCCCAAcgagtgaagtgtgtgtgtgtgtaaaggattGTTTGAAAGAGTGTGTAAGACCATAATGTGAGTCTGTGGATTCAACCCCTCCCACTGTCAAATGCTTAGCCAAGCTCCCCCCAGTGGACCTTCAGGTTACTGCAACAATATCTCTCTCTAAGCAATGTGACCTGTCATAATAATGTTACTAATTGGCTCCTTTAATGTCATTTTACTGCCTTCTACTGTAATACAAGTCATGGAAGAAATGGTATTGACAGCATGGACAGCTACAGGACTGCTTACATGTAGCACCTACCTTTTTATAGGAAACTGTCAAATTTTGAATTTTCTGTTGGagatcaaataaaattttatttgtcacatttgtcacata
>TU265667
CAGACGTAAACAAAGAGCACGTCGTACATATTCATTCAAACGAGAGCAGGTCCACTGACGGTTCAACCACAGCGTCAGAAATGCCGATATGGAGGTGGACTACAAGCAGAACTACACAAATCTCAAACGCAAATTGAAATTCATGGTTTATGAGCAGGAGTGTTTTCAGGAAGAGCTCAGAAGATCCCAGAAGAAGCTGCTCAGAGTGTCCAGAGATAAAAGTTTTCTGTTGGACCGATTGTTACAATACGAGCGGGTGGACGAGGACTCCTCAGATTCTGATGCCACTGCCTCTTCTGAGAACagcgaaggagagggagagagacggaggaaagAAGAGAAGAAGTAGCCCAGGTGTAGGCCTTCCTtcatcctcccatctctctctcctctctcgttctgGAGTGAACCCTCTCCAGTCGTCCGTCAGTACCCCTACCTCAACACAGTGGTGGCCCCTTTAGCAGCCAACTTCCCAGCGGGCCCGACTGCCCCTCCCACATCCAGCGCCTCGTTCAACTGGGTGCCCAGGCAGATGCTGAGTGGAGACACGgcggaggaagagggagagagcgacgGAGACTCAGACAGAGGAGACGACAACaggggggaaggagaagaggCTGACCTTGTCATTGATATCCCCAAcgagtgaagtgtgtgtgtgtgtaaaggattGTTTGAAAGAGTGTGTAAGACCATAATGTGAGTCTGTGGATTCAACCCCTCCCACTGTCAAATGCTTAGCCAAGCTCCCCCCAGTGGACCTTCAGGTTACTGCAACAATATCTCTCTCTAAGCAATGTGACCTGTCATAATAATGTTACTAATTGGCTCCTTTAATGTCATTTTACTGCCTTCTACTGTAATACAAGTCATGGAAGAAATGGTATTGACAGCATGGACAGCTACAGGACTGCTTACATGTAGCACCTACCTTTTTATAGGAAACTGTCAAATTTTGAATTTTCTGTTGGagatcaaataaaattttatttgtcacatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaat

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0006260 DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0031011 Ino80 complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592869.2 False 859 mRNA 0.46 5 19852621 19854181
XM_021592877.2 False 1099 mRNA 0.48 7 19852622 19857615
XM_021592879.2 False 1106 mRNA 0.48 7 19852622 19857615
XM_021592870.2 False 839 mRNA 0.46 5 19852638 19854181
XM_036971356.1 False 1057 mRNA 0.48 7 19852668 19857615
TU265667 True 1077 lncRNA 0.47 7 19852713 19857677

Neighbor

gene id symbol gene type direction distance location
LOC110512505 LOC106579702 coding upstream 8170 19821356 ~ 19844652 (+)
LOC110512494 LOC106579625 coding upstream 33160 19802986 ~ 19819461 (+)
LOC110503837 LOC106605407 coding upstream 50712 19801239 ~ 19801909 (+)
LOC110503829 LOC106605397 coding upstream 90292 19695123 ~ 19762329 (+)
LOC110512436 LOC106579516 coding upstream 169890 19674164 ~ 19682731 (+)
LOC110512626 LOC106579786 coding downstream 1365 19858980 ~ 19863882 (+)
LOC110512599 LOC106579727 coding downstream 6360 19863975 ~ 19877144 (+)
LOC110512638 LOC106605406 coding downstream 72461 19930076 ~ 20016410 (+)
LOC110512678 LOC106579830 coding downstream 234460 20092075 ~ 20232416 (+)
LOC110512735 NA coding downstream 420563 20278178 ~ 20346029 (+)
G232415 NA non-coding upstream 590 19851797 ~ 19852031 (+)
G232414 NA non-coding upstream 1350 19850960 ~ 19851271 (+)
G232413 NA non-coding upstream 18144 19833042 ~ 19834477 (+)
G232354 flot1 non-coding upstream 77442 19774317 ~ 19775179 (+)
G232355 NA non-coding upstream 87452 19762720 ~ 19765169 (+)
G232341 NA non-coding downstream 40827 19898442 ~ 19905535 (+)
G232448 NA non-coding downstream 108118 19965733 ~ 19966496 (+)
G232520 NA non-coding downstream 221029 20078644 ~ 20080490 (+)
G232545 NA non-coding downstream 253524 20111139 ~ 20147888 (+)
G231983 LOC106597055 other upstream 618326 19226366 ~ 19234295 (+)
G231438 NA other upstream 1000639 18851249 ~ 18851982 (+)
LOC110511593 LOC106579240 other upstream 1265780 18569698 ~ 18588248 (+)
G230916 NA other upstream 1556516 18295354 ~ 18296105 (+)
G233521 LOC106579937 other downstream 701161 20558776 ~ 20565712 (+)
G233545 NA other downstream 750678 20608293 ~ 20608725 (+)
G234322 dcst2 other downstream 1406460 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 1429111 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 2159979 22017579 ~ 22037490 (+)

Expression


Co-expression Network