LOC110512626 (LOC106579786)


Basic Information

Item Value
gene id LOC110512626
gene name LOC106579786
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19858980 ~ 19863882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592900.2
ccagggtctcgagcttgatgacgagcttggagggtactatggtgttgaatgccgagctgtagtcgatgaacagcattctcacataggtattcctcttgtccagatgggttagggcagtgtgcagtgagaTAATGGAGATGTTATGTTTACTACCAATgactttaaaaaaatgaaattgcATTAAAGTGGTAACATTTCAGATGACTGTGGTAGTTGTTGTTGAAAGCCTAATGGACTggtagtatagtgtatagtatgtgCTGCACAGACGTGCAGTACTGCGCTTTTACTCAAAACAACTGTTTCTATTGGCTGTGCCTGGAGACAAAAGCCTTTTATGCTGCGTTCATAACCAAATGGGAAGGTGGTTTTTACCTCTTACAACTGGAAAAAATCCACATGAACGCCCCTTCAACTCGTAAAATCTAGTAGGAAACTTGTCTATCATCCCTGAGCTCTGACTTCTCGCACATGCTGACCTCTGATGTCACCTACTAAGAAAATGACCTCGATAACAGCATTTTCGGCAgttaaatgtaatttttttacAAGCATTATaactgtacttttagtttatggttgacacCGATTGTTGGCCATTAGCCAGTCAGCGTTTCTCAACGAGTTAAGAATGCATCCAACTGTTATTTACGACTTGACAACTGGTAATTAgtaccttcccacttggttatgaacgcaGCATATAGCCCAACCCAAAACTATCACACCCAAAAGCCATGCAGCTGTTAGTATGGAATGCATCCAAACAACCTAAATCTACAGACAAAGGAAATAATGAGTGCCTTTGCTACAGACTAATAACTGTGTCTGTGAATATAATAAGGAACAGTGTGACACTGTCGGAAAATGAATTATGCACTGATAAAGATTTTTCTTGGTGGAAAATACACATGTCAAACTATTAGCCTAATCTCCCTCAGATGTGCATTGATGTGTAGCCTAACCCATAAAAGGAATTCTCCTACCTGACTGTCAGGCCCAAGGGTGCACTGAAGACTCCATGTGATCCCAGTCATAACACGTAGCAGGACCAATCTGGTTTGTGACCCCCTATGTCAGAGTTCACATAGGTGAAGAGCTTAATTATTATGCTCTCGTCTTTCCTCCCTTGTCATCTCACAGAGATTGCAATGGATTGAATTGGATGACTCCTATCAATTTGAGAGTGGATACATTTCCCCATTTCCCTCAGCTTTACCCAACCAAGTGGCCACTGAAACACAAAATCTAAAATAATTTTGTCTTTATAGCAGAGAAAATGTAATTCAGTCAATAGAATCTATTTTGGAACATTGGtggtggatatatatactgtgtgATATTCAACACTAGGCCACTGCTGTAAGATATACTGCTGTGGTTTCACTGTGCACCCTAATAGTGCATGCATAAGCACTCGGCTAAAATAAAGTCAGCACTTTCTAAGAGGTGTGTGTTTTACCAGAGAAAATGAACCATTGAGCTGTCAATCAGACAGCCAAACCTTGTGGAAACATTGTTTGGGAATGCAGACTTACAGGTAATAGGAACCGGTTACTGGGTGTGGGTCTGCTGTGTGTACCTAACAGTAATGAGAGGTAAAGGTGTAACCAAAAGGAGctatgaaagagaggaaggagggagggatagccAGGTAGAGGTGTAGCTAgagggagaatgtgtgtgtgtgagggagggagggagagtgagcttGTCAATGAGGGAGGGAGAAGCAGAGTGTAAGCAAGACTGTGCCCAGACACagacagcacagcacacacagtCCAAGGAGAAAGACATGGGTGGAGACGCTGACAGGGTGGAAGAGAAAAAAGAAGGGAGAGATTGAGAAGGGGATAGAAGAACGGCATACCAGAGATTCCCTGGCTGTCAACCCTAGCTACCGGCCATTATCCTCTCCCATCTGCGTAGATACAGCACAAACCTCTGGATTATttaccagcctctctctctgtgagtgtgtgggttTGCTGAGCTCACCATGCTGCTGCTGCGGTGGTGTCCTGCTGGTGTCAGTGTCAGTACTGCAGGCTGGGCAGGGTGGATCTGGCTGGGGCTGACTCTGACTCTGGAGCTGTCTCTACCAGTCACGGCACTATCAGAACCAGACCCAGGCTTCTCCCTCTGCAGACAGAGCTTCTACAGACAGACCCCTCCCCTGGGCCTCTCTGTAGGTGCAAGGCCCCTCCTGACCCCCCTCTGTCACAGGCTGCCAGGGGGACAGGCGTTCGCCACACTCTACCACCCGACCTGTGACGCAGCTGTTTACTCTGCCTTTCATCTCAGCCAAGGATGGGGGAcagaaaaggaggaagaggatgccagaggggaggagaaagaggacgaAGGGTCCCAGGTGATGACCCCAGCCCTGCTCCAAGGGGATGTGGCGGGGGGTAAACCCCAAGCTCATTCTGACTCTCCCCTCCACCAGTGGGGCTCCCTGGCCAGAGAGCTGATCCAGAGCAGCGTCCTGCCCCAGTGTGGCTCCACAGGGGGCCAGCTCTACGTCCTGACAGGAGCCACAGGGCTCAGGCTGGGGTCCGGGATGGAGGAAGGTGGGGATGGGGGTTGTGAGGCTGGGGTGCAATGGTCTGCAGTGTGCTGTGCTGGTCCAGAGGGACAGAGTGGGTTCAGTGTGGgggtagtgagagagacagggggaggggagagggtggtGAGTGTTAAGGAGCTGGAACACATGATTGGAGTGACAGATCTATTTTCAGAGGGTTGCGGGGAAGCAGATGGGGACACGGAGGGAGACATAGTGACACTGCTCAGTGATGTGATGGTTGGAGTCGTAGAAAAGCAAAGAGCGGTCGCAAGGCCAGACGCCATTGAGGAAACACTAGATGAGACTACTGACCGAAGCATAGAGGGACTACCTGCCGACACAGAACCTCTCATCACTCCTTCAGTGGACAACGAGACACTGGCCTCTGAGTCGGACTCAGAGTCGTCCAGCAACCCTCTGGTGTATATCatcacctcctctgtctccctgctcaTGGCTCCTCTACGCCCTGTAGTCTCCACACTCATTGGGATCCCTGGACAGGTGGCCTTTGTCCTACAGGAAGACCTGGGGGTCCTGTCTGCCCTGCCAGGCGACATCCTTTCTGTGTTCTACAACATGGCGTCTGACCTGGTTTCTGGGGTCGGCTCAGTCACAGGCCTGATACTTGGTGTGGGGGAGATGTGCTTCTCTACCCTGTATTGCATTACAGCCCCACTGGTGGGCTCTCTGTTCACCAGCTGCCAGGACGGGGTCACAGGGGTGGGCACCCTGGCCTGGGATGGGGTGGGCATATTCAGGGGGATTGTGGACAGTGCCTGGTGGGTGTCCAGGGTGGTCGGGGACCAGGCGTGGGAGCAGGGTGGGGGGTTTGTGGGGTCGGTGGTGTCTGAGATGGGAGGGCAGGTGAAGGCAGTGGGTGGGGGAATGGGGAAGCTGGCGTGGAGGTGTGGGAATGGGGTGGGAAACATGGTGAGGTTGGCAGGAGGGCTAGTAGTAGGGAGCACGGAAACGGTTGTGGAGAATGTGATGGAGGTCTTTGGGCAGGACCAGAACTGTGGATGGTTTGGGTCTACAGAGAATGTTCATCAATAACATTGCAGATTTATTGCAAACCTTGAAAATTGTGTATCTTGTTCTTATAAAGTATGTAAATATGCACCAGATAGCAAGAGATAATTGATGGGTACACCGCAATGCCAATGCCTCTAGCTAAGCTGTATTAACATAAATGCATAGTTAGGCACAcaacacattttcattttttttgttgctccgTAAAGTAGACGacttctacttctactacttcTTAGTTGTAAAGAAGCAGGATCCCAAAAGACTAATGCTGAGATGAATGGTGTATATGTCAGAAAGTGAAGCTGGGTAGCCCTATGGGTGTGCTGGCCATTTGATCAATTACAATATGGTATTATTTTGGGGAAACATGCTTTGACTGTGTGAGTTCATATGGTAATAGGTGTTAGAATGTATGTTACTTTATGAACTATATGCTTGCTTGATTAAAAAGGATAATTGATTGATCACA
>TU265663
GGTGAGGTTGGCAGGAGGGCTAGTAGTAGGGAGCACGGAAACGGTTGTGGAGAATGTGATGGAGGTCTTTGGGCAGGACCAGAACTGTGGATGGTTTGGGTCTACAGAGAATGTTCATCAATAACATTGCAGATTTATTGCAAACCTTGAAAATTGTGTATCTTGTTCTTATAAAGTATGTAAATATGCACCAGATAGCAAGAGATAATTGATGGGTACACCGCAATGCCAATGCCTCTAGCTAAGCTGTATTAACATAAATGCATAGTTAGGCACAcaacacattttcattttttttgttgctccgTAAAGTAGACGacttctacttctactacttcTTAGTTGTAAAGAAGCAGGATCCCAAAAGACTAATGCTGAGATGAATGGTGTATATGTCAGAAAGTGAAGCTGGGTAGCCCTATGGGTGTGCTGGCCATTTGATCAATTACAATATGGTATTATTTTGGGGAAACATGCTTTGACTGTGTGAGTTCATATGGTAATAGGTGTTAGAATGTATGTTACTTTATGAACTATATGCTTGCTTGATTAAAAAGGATAATTGATTGA

Function

NR:

description
endonuclease domain-containing 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592900.2 False 4085 mRNA 0.49 3 19858980 19863882
TU265663 True 570 lncRNA 0.39 1 19863308 19863877

Neighbor

gene id symbol gene type direction distance location
LOC110512558 NA coding upstream 1365 19852621 ~ 19857677 (+)
LOC110512505 LOC106579702 coding upstream 14529 19821356 ~ 19844652 (+)
LOC110512494 LOC106579625 coding upstream 39519 19802986 ~ 19819461 (+)
LOC110503837 LOC106605407 coding upstream 57071 19801239 ~ 19801909 (+)
LOC110503829 LOC106605397 coding upstream 96651 19695123 ~ 19762329 (+)
LOC110512599 LOC106579727 coding downstream 93 19863975 ~ 19877144 (+)
LOC110512638 LOC106605406 coding downstream 66194 19930076 ~ 20016410 (+)
LOC110512678 LOC106579830 coding downstream 228193 20092075 ~ 20232416 (+)
LOC110512735 NA coding downstream 414296 20278178 ~ 20346029 (+)
LOC110512801 LOC106579904 coding downstream 490535 20354417 ~ 20440018 (+)
G232415 NA non-coding upstream 6949 19851797 ~ 19852031 (+)
G232414 NA non-coding upstream 7709 19850960 ~ 19851271 (+)
G232413 NA non-coding upstream 24503 19833042 ~ 19834477 (+)
G232354 flot1 non-coding upstream 83801 19774317 ~ 19775179 (+)
G232341 NA non-coding downstream 34560 19898442 ~ 19905535 (+)
G232448 NA non-coding downstream 101851 19965733 ~ 19966496 (+)
G232520 NA non-coding downstream 214762 20078644 ~ 20080490 (+)
G232545 NA non-coding downstream 247257 20111139 ~ 20147888 (+)
G232673 NA non-coding downstream 529930 20393812 ~ 20466345 (+)
G231983 LOC106597055 other upstream 624685 19226366 ~ 19234295 (+)
G231438 NA other upstream 1006998 18851249 ~ 18851982 (+)
LOC110511593 LOC106579240 other upstream 1272139 18569698 ~ 18588248 (+)
G230916 NA other upstream 1562875 18295354 ~ 18296105 (+)
G233521 LOC106579937 other downstream 694894 20558776 ~ 20565712 (+)
G233545 NA other downstream 744411 20608293 ~ 20608725 (+)
G234322 dcst2 other downstream 1400193 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 1422844 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 2153712 22017579 ~ 22037490 (+)

Expression


Co-expression Network