LOC110512599 (LOC106579727)


Basic Information

Item Value
gene id LOC110512599
gene name LOC106579727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19863975 ~ 19877144 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110512599
ATAATTGGTCTGACTGAGAGTATGGACAAatgtcattgtcaatttggaaaaGGCATTTTTACAGGCCGCCTTGATGTGGCAGAAATGAATCTGACCAAAGCGTCCTTCGAACCAAACATGAGCGCAACATTGCGTAAGACGGCCGACTACTTACACTGCTTATCTGGAACTCATGAGTTGACGTCTCTTTCTTATTCATTCAAAGGGATGGCTTCGCTCTACATCTCCCCCCACCCTGATGACTTCAGGAGCCTCATGGCCCTGGTCGCTGCAGAGTTCTGCCCCTCTCGGCCCTGCACACTCATAGAGGACCCTCCTGCCTCCCTGGCCCTGTGCTCTCGCCCCAGCCTGGTGCTGGGCTCTGGGGGAGGTGAGGTGCTCTCTGGGGCCATTGCTGTTGCATGGTACCTAGCCTCTCAGGGGAAGATGATAGGGTCGAATGCTAAGCAGGAGAGCCAGGTGTGGCAGTGGCTCAGCTTTGCAGACAATGAGCTGACTCCTGTGTCCTGTGCGTGGTGTTCCTACTGCTGGGGGTGATGGGAGTGGATAAGAAGCTTCAGCAGAGTTCTCATGCTGAGATGATGCACGTGCTAAACGTTCTAGATAAGAACCTGGAGTCTAGAACATTCCTGGTGGGAAACAGCCTCACTCTGGCCGACATCGCTGTGGCAACAGCAGCACTCCTGCCCTTCAAATACGCCTTGGAGCCATCCAACAGGAGAGCCCTGACGAACGTGACCAGGTGGTTTCTGACCTGTGTCAACCAGTCACAGTTTGTGAATGTCCTGGGACAGATCTCTCTGTGTGAGAAGATGGTGCCCGTCACACCCAGACCCAGCGTTGCTCCTGTTCCTGCTGCTAATGCTAATCCAACTGATGATGCCAACGCTGTCAATGGCAAACCAAAGACAGAAGCTCAGCTGAAGAAGGAGGCTAAAAGCAGAGAGAAGCTGGAGAAGTTCCAAcagaagaagaagatggaggagaagaaaaaGCAAGAAAAGAAACTGGCTCCCCCGACAGAGAAAAAGGCCAAACCAGAGAAGAAGGACCTGGGAGTGATCTCATACGACGTCCCCACCCCTCCTGGAGAGAAAAAAGATGTCCTGAGCCCCCTGCCAGACTCGTACAGTCCTCAGTACGTGGAGGCAGCCTGGTACTCCTGGTGGGAGAAGCAGGGATACTTCAAACCTGAGTACGGGCGGAAGAGTATCAGTGAGCCGAATCCCCGTGGAGTGTTCATGATGTGTATCCCTCCGCCCAATGTGACGGGATCTCTTCACTTAGGCCATGCCCTAACCAATGCCATCCAGGACTGTCTGACCAGATGgcATCGTATGCGTGGCGAGACGACCCTGTGGAACCCAGGCTGTGACCACGCGGGCATCGCCACCCAGGTGGTGGTGGAGAAAAAACTGATGAGGGAGAGGGGCATGAGCCGTCACGACCTGGGGAGAGACCAGTTCATCCAAGAGGTCTGGAAGTGGAAGAACgaGAAGGGAGACCGTATCTACCACCAGCTGAAGAAGCTGGGTTCCTCTCTGGACTGGGACAGAGCCTGCTTCACCATGGACCCTAAACTGTCCAATGCAGTCCAGGAGGCGTTCATTCGTCTGCATGAGGACGGCGTGATCTACAGGAGCAAGAGGCTGGTCAACTGGTCCTGCACCCTCAACTCTCCCATCTCGGATATAGAGGTGGATAAGAAGGAGCTGACTGGCAGGACTCTGCTGCAAGGACAAAGTGGAGTTTGGAGTACTGGTCTCCTTCTCCTACAAGATAGAGGTATCAgATGAGGAGGTGATTGTGGCGACCACTCGTATAGAGACCATGCTGGGAGATTCTGCTGTGGCCGTCCACCCTGCCGACCCCAGATACCAGCACCTTAAAGGGAAGGTGGTGCTTCATCCCTTCTGTGACAGGATGATGCCCATTGTGTTTGAGTTTGTGGACATCAACTTTGGAACAGgtgCTGTGAAGATCACCCCAGCCCATGACCATAATGATTATGAGGTTGGAAACAGACACAACCTGGCCTTCATCAACATCCTGGATGAGAACGGCCTGCTCATCAACGTGCCGGCTCCATTCTTGggTATGAAACGTTTCGAAGCAAGGAAGGCTGTGCTACAGGCTCTGAAGGACAGAGGCCAGTTCAAGGAGTCCAAAGACAACCCCATGGTGGTGCCTGTCTGCAGTCGTTCTAAGGACATAGTGGAGCCCCTGCTGAAGCCTCAGTGGTATGTGGACTGTGCTGACATGGGCAAGCAGGCAGCTGACTCGGTCCGGGAGGGAAGACTCAAAATCATCCCAGACCACCACCATAAGACCTGGTTCAACTGGTTGGACAACATCAGggaCTGGTGTATCTCTCGTCAGCTGTGGTGGGGTCACAGGATCCCAGCCTACTTTGTCACTGTGAACGACCCTTCAGTCACACCAGGAGAGGACATGGATGGTCATTACTGGGTGagtgggaggacagaggaggacgCCAGAGATAAAGCTGCCAAGCGCTTCAACGTCTCCACTGACAAGGTCACCCTCAGACAGGATGAGGATGTCCTGGATACATGGTTCTCCTCTGGTATTTTCCCCTTCTCCATCTTCGGCTGGCCCAACGagacCCAGGACCTGAGTGTGTTCTATCCAGGCAGCCTGCTGGAGACAGGTCATGACATCCTGTTCTTCTGGGTGGCCCGCATGGTGATGATGGGCCTCAAACTCACCGGCAAGCTGCCCTTCAAAGAAGTGTACCTCCATGCGGTGGTGAGGGACGCCCACGGGAGGAAGATGAGCAAATCTCTGGGGAACGTCATCGACCCCCTGGACGTCATCACAGGCATCTCTCTGGAGggtcTGTACGCCCAGCTGCAGGACAGTAATCTGGACCCAGTAGAGGTAGAGAAGGCCAAGCAGGGACAGCAGTCTGACTACCCCACTGGTATCCCAGAGTGTGGCACAGATGCCCTCCGCTTCGCCCTGTGTGCCTACACCAGCCAAGGCAGGGACATTGACATGGATGTGAATCGTATCCTTGGTTACCGTAATTTCTGTAACAAGCTGTGGAATGCTGTGAAGTTTGCCATGAGAACGCTGGGAGGCAACTTTGTTCCTTCAGAGAAAGCCCAGCTGTGTGGGGAGGAGAGCGTGTCAGACCGGTGGATTCTGTCCCGTCGTGGGTCTGTGTAATGCAGGGTTCCAGGCCTACGACTTCCCAGCTATCACCACAGCCATCTACAACTTCTGGCTCTACGAGCTCTGTGACATCTATCTGGAGAGTGTGAAGCCAGTGGGTCTCAGAGCCAGGCTGTCGTCTGCAGACAGACCCTGTTCACCGGCCTGTGTCTCCTAGCTCCCATAATGCCCTTCGTAGGCGAGGAGCTCTACCAGAGGTTGCCACGGCGACGATCCCAGGATGACCACGCTAGTATCCATGTCATGCCCTACCCTGAGACTGAGAAGTTCTGCTGGCATAGTGAGGACGTGGACCGTCAGATGGAGTTTGTGATGACCGTACTCAGGGCCGACTACAATCTGACCAAGACACATGCCGATTGCTACCTCCAGTGTATAGACAGTGAGACGATGTCTCTGGTGGAGCAGTACAGTCTGCAGATCCAGACCCTGTCTCTATCCCAGACCATCCAGCCCGTCCCAGCCACCGGGGCTGTGCTGTGGCCATTGCCTCCGACAGGTGCACCGTCCACCTCATGCTCAAGGTTCTGATAGACTTGGAGAAGGAGGTGGCCAAGCTGACTATGAAGAAGAGTGACTACAAGGAGAAGGTGCCTGTTAAAGTACAGGATCTGGATGCTGAGAAGctgcgacagagccagACGGAGCAACGGAAGCCATAGACAACTTCAAAAGAATGGTGTAACCTCTCTCCGTCCCCTTTTACAACATTTCTTAAaatagtgagctccaaaagtattgtgaCAGTGacttttgttttggctctgtactccagcacattggatttgaaatgatacaatgacaacAGGTTAAAGTGCAGACATTTAGATTTAATTTGAAGGTATTTTTATCCATATCGGGTGAATGCCACCATGATTACGAATGAGAAATTTAGACATGACTTGTGCCTAACTTATCATTATACACAATCATGGTAGAATCCATATTAatgttctattcttatttacaataagtgAC

Function

NR:

description
PREDICTED: valine--tRNA ligase-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110512599 True 4176 mRNA 0.53 30 19863975 19877144

Neighbor

gene id symbol gene type direction distance location
LOC110512626 LOC106579786 coding upstream 93 19858980 ~ 19863882 (+)
LOC110512558 NA coding upstream 6360 19852621 ~ 19857677 (+)
LOC110512505 LOC106579702 coding upstream 19524 19821356 ~ 19844652 (+)
LOC110512494 LOC106579625 coding upstream 44514 19802986 ~ 19819461 (+)
LOC110503837 LOC106605407 coding upstream 62066 19801239 ~ 19801909 (+)
LOC110512638 LOC106605406 coding downstream 52932 19930076 ~ 20016410 (+)
LOC110512678 LOC106579830 coding downstream 214931 20092075 ~ 20232416 (+)
LOC110512735 NA coding downstream 401034 20278178 ~ 20346029 (+)
LOC110512801 LOC106579904 coding downstream 477273 20354417 ~ 20440018 (+)
LOC110512870 LOC106605416 coding downstream 569525 20446669 ~ 20473526 (+)
G232415 NA non-coding upstream 11944 19851797 ~ 19852031 (+)
G232414 NA non-coding upstream 12704 19850960 ~ 19851271 (+)
G232413 NA non-coding upstream 29498 19833042 ~ 19834477 (+)
G232341 NA non-coding downstream 21298 19898442 ~ 19905535 (+)
G232448 NA non-coding downstream 88589 19965733 ~ 19966496 (+)
G232520 NA non-coding downstream 201500 20078644 ~ 20080490 (+)
G232545 NA non-coding downstream 233995 20111139 ~ 20147888 (+)
G232673 NA non-coding downstream 516668 20393812 ~ 20466345 (+)
G231983 LOC106597055 other upstream 629680 19226366 ~ 19234295 (+)
G231438 NA other upstream 1011993 18851249 ~ 18851982 (+)
LOC110511593 LOC106579240 other upstream 1277134 18569698 ~ 18588248 (+)
G230916 NA other upstream 1567870 18295354 ~ 18296105 (+)
G233521 LOC106579937 other downstream 681632 20558776 ~ 20565712 (+)
G233545 NA other downstream 731149 20608293 ~ 20608725 (+)
G234322 dcst2 other downstream 1386931 21264075 ~ 21264506 (+)
G234340 LOC106580151 other downstream 1409582 21286726 ~ 21287002 (+)
kiaa0319 LOC106580477 other downstream 2140450 22017579 ~ 22037490 (+)

Expression


Co-expression Network