XLOC_021616 (slmapb)


Basic Information

Item Value
gene id XLOC_021616
gene name slmapb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19590006 ~ 19604413 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042900
CAAGACACCTTCTGCACCTAACCGTCTTCTGTCCTGTTTTGTTGACACGACCCCCAGATAAGATTTGTAGATGCGTCGGTGACTCCCCTCGCTTCAGAATGGACTCGTCCGGTTCTCATCACCAGAGCGAATCGATAGTTAAAGAAGGCTGAATTTTGCAGCTCTGTTTCGGCTCCGACTGTTGTGACATCACGAGTCTTCAGTGGGGGAAACAATGGAGGAGCAAAAGCTGAAAGATCCTATTAATAAAGTGTCCCTAATCAAAGATGAGCTGAGCAGGAGCACTGTGGAGGCCAGTGAGTCTGAGAAGGTCATCCAGCGGCTGAACCAGGAACTGCAGGAGGCCAATGAACAGCCCAACTCcagcaaatacaaatgtgttgaaCTTCAAGGTCTACTGGAGGAGGAGAAAAGAGCCAATAAGCAGCAGGCAGAGGAGTCAGCAAAACAGATGAAGGTCTTACAGACTCAGCTCCAGAAGCTCCAGGAAGAGATGGAAAACCTCAGGGATCAGAAGGACAGCGCAGTCTTCAGCATGAGACAGGAAACCCACGCGGCTCAGGAGGAAGTGCAGGTGCTGCGTCGCACTATGGAGAAAACGGCAGCAGAGCGAGAGCATGAGGTCAGTGCGCTGAAGGGGAATCTTGCAACGCTCACTTCAGAGCTGGAAAAATGGCAGCAGGCAGCAAACAAGTACGAGCGCGAGCTTGAAAGTGTACAGGCAAGTCACCTGCAGCAGAACCAGCAGAGGGACAGAGCCACCAAACAACAAGCGGGCGAGCTGGAGAAGGTGCAGAAGGACTGTGAGAGCCTGAGGAGGGACTGTGCATCTCTGAGGTCAGAGAGAGAGCAGCTGGCTGATAAACAGCAGAAAGAGAAGGCCAGTCTGCAGAATGAGAACAGCAGCCTGCGCTCAGAGAAAGAACAGCTACAGAAGAAACAACAGCAGCTGGAGAAAGAGCTGGACAGCTCCAAGAAACAGAACACCAGCCTGAGCAACACGGTCAAGAGCCTGGAAAAGACGCAGGCCGACCTGGAGAAGCGTCTGAGCGTCCTGCAGGAGGAGCACCAGAGAGACAACGGGCAGCTGGAGCAGAGCAACAGCAGGATCAAAGAACTGCAGAAAGAGTATGAGGAGATGCAGGCAGAGCTGTCGGGCCTGAGGGGGAAGTTTGAGAATGCAGAGGAGGAGAAACGCTCCGTCAGTCTGGAGCTGCAGCAGAGCCAAGAGCGCCTCAGGCTTATGCAGGACAAAGACAACCATggaaAATGGATCAGATGGATGCCTGTCGCCGCTGTAACTGTTGCTGTGACAGGATATTTGCTTTCAAAGTCCTCAAAATGAAGCACGTGATGAACCAGTAACAAGCACACGCACCTGACATGCACACCTAGCAAACCTTTCTCAGATGTCTTGACTTTTTTTGTCCTTTTAGTCCGCGGGATGTTAGTTTGAGTAATGAGTATTTAAAAGCAACTTCTTACTCAAATGTTAAAGGGAGTAATAACGTGAGAACATttcccatcttttttttttaaattagatgtACTGTTTGCATAGCATTTGAAGTATCTGGCTAATAACAGGTATTTTATTGAGCACTGTTGCTTTTGCCAAACAAACATTTAGTAAATTGCCTTAACCTTAGATGAGCAAAAGTTTATACCTCGCCTGAATGAGAGCTGACTGAGCATCGCAGCGCCCACTGCAATAACACATTTCAGACATTGATGGATCCGTTTATGTTTTAACTCACTCATATTTTCTGTGGCCTGAAGGCCTGTTTTGCCATGTAACCTGTTTGTGTCTTTGCACCTTATACGAAGCCATTAGTGATTAGTCTATGCACTGTACTTTATTGTTATAAGGGTTTGATGTGTTAATGataatgatgttgatgatgataataaatattgtacacttAGGAGATTAGAGTGCTAATGTTCCCTAAAGAGAGCTGTTATAGAGTGTTTATGATTTATGTTTATTACTTGTACAGAGATTTAAGGATCCAACTACCTGATCTAAAAAGCGTGCTATCTGCAATAAATGAGCAAAAGGGAAGTTCAA
>TCONS_00042901
ACAATGGAGGAGCAAAAGCTGAAAGATCCTATTAATAAAGTGTCCCTAATCAAAGATGAGCTGAGCAGGAGCACTGTGGAGGCCAGTGAGTCTGAGAAGGTCATCCAGCGGCTGAACCAGGAACTGCAGGAGGCCAATGAACAGCCCAACTCcagcaaatacaaatgtgttgaaCTTCAAGGTCTACTGGAGGAGGAGAAAAGAGCCAATAAGCAGCAGGCAGAGGAGTCAGCAAAACAGATGAAGGTCTTACAGACTCAGCTCCAGAAGCTCCAGGAAGAGATGGAAAACCTCAGGGATCAGAAGGACAGCGCAGTCTTCAGCATGAGACAGGAAACCCACGCGGCTCAGGAGGAAGTGCAGGTGCTGCGTCGCACTATGGAGAAAACGGCAGCAGAGCGAGAGCATGAGGTCAGTGCGCTGAAGGGGAATCTTGCAACGCTCACTTCAGAGCTGGAAAAATGGCAGCAGGCAGCAAACAAGTACGAGCGCGAGCTTGAAAGTGTACAGGCAAGTCACCTGCAGCAGAACCAGCAGAGGGACAGAGCCACCAAACAACAAGCGGGCGAGCTGGAGAAGGTGCAGAAGGACTGTGAGAGCCTGAGGAGGGACTGTGCATCTCTGAGGTCAGAGAGAGAGCAGCTGGCTGATAAACAGCAGAAAGAGAAGGCCAGTCTGCAGAATGAGAACAGCAGCCTGCGCTCAGAGAAAGAACAGCTACAGAAGAAACAACAGCAGCTGGAGAAAGAGCTGGACAGCTCCAAGAAACAGAACACCAGCCTGAGCAACACGGTCAAGAGCCTGGAAAAGACGCAGGCCGACCTGGAGAAGCGTCTGAGCGTCCTGCAGGAGGAGCACCAGAGAGACAACGGGCAGCTGGAGCAGAGCAACAGCAGGATCAAAGAACTGCAGAAAGAGTATGAGGAGATGCAGGCAGAGCTGTCGGGCCTGAGGGGGAAGTTTGAGAATGCAGAGGAGGAGAAACGCTCCGTCAGTCTGGAGCTGCAGCAGAGCCAAGAGCGCCTCAGGCTTATGCAGGACAAAGACAACCATggaaAATGGATCAGATGGATGCCTGTCGCCGCTGTAACTGTTGCTGTGACAGGATATTTGCTTTCAAAGTCCTCAAAATGAAGCACGTG
>TCONS_00042902
GGGCTGATGTCCTAAGCCATATTTACTAAACAGCGTATTATAACAAGCgatgtgtgtaatgtgtatatgtGTCTACATGTGGATTTAGCTCAGCTCCAGAAGCTCCAGGAAGAGATGGAAAACCTCAGGGATCAGAAGGACAGCGCAGTCTTCAGCATGAGACAGGAAACCCACGCGGCTCAGGAGGAAGTGCAGGTGCTGCGTCGCACTATGGAGAAAACGGCAGCAGAGCGAGAGCATGAGGTCAGTGCGCTGAAGGGGAATCTTGCAACGCTCACTTCAGAGCTGGAAAAATGGCAGCAGGCAGCAAACAAGTACGAGCGCGAGCTTGAAAGTGTACAGGCAAGTCACCTGCAGCAGAACCAGCAGAGGGACAGAGCCACCAAACAACAAGCGGGCGAGCTGGAGAAGGTGCAGAAGGACTGTGAGAGCCTGAGGAGGGACTGTGCATCTCTGAGGTCAGAGAGAGAGCAGCTGGCTGATAAACAGCAGAAAGAGAAGGCCAGTCTGCAGAATGAGAACAGCAGCCTGCGCTCAGAGAAAGAACAGCTACAGAAGAAACAACAGCAGCTGGAGAAAGAGCTGGACAGCTCCA
>TCONS_00042904
GGGCTGATGTCCTAAGCCATATTTACTAAACAGCGTATTATAACAAGCgatgtgtgtaatgtgtatatgtGTCTACATGTGGATTTAGCTCAGCTCCAGAAGCTCCAGGAAGAGATGGAAAACCTCAGGGATCAGAAGGACAGCGCAGTCTTCAGCATGAGACAGGAAACCCACGCGGCTCAGGAGGAAGTGCAGGTGCTGCGTCGCACTATGGAGAAAACGGCAGCAGAGCGAGAGCATGAGGTCAGTGCGCTGAAGGGGAATCTTGCAACGCTCACTTCAGAGCTGGAAAAATGGCAGCAGGCAGCAAACAAGTACGAGCGCGAGCTTGAAAGTGTACAGGCAAGTCACCTGCAGCAGAACCAGCAGAGGGACAGAGCCACCAAACAACAAGCGGGCGAGCTGGAGAAGGTGCAGAAGGACTGTGAGAGCCTGAGGAGGGACTGTGCATCTCTGAGGTCAGAGAGAGAGCAGCTGGCTGATAAACAGCAGAAAGAGAAGGCCAGTCTGCAGAATGAGAACAGCAGCCTGCGCTCAGAGAAAGAACAGCTACAGAAGAAACAACAGCAGCTGGAGAAAGAGCTGGACAGCTCCAAGAAACAGAACACCAGCCTGAGCAACACGGTCAAGAGCCTGGAAAAGACGCAGGCCGACCTGGAGAAGCGTCTGAGCGTCCTGCAGGAGGAGCACCAGAGAGACAACGGGCAGCTGGAGCAGAGCAACAGCAGGATCAAAGAACTGCAGAAAGAGTATGAGGAGATGCAGGCAGAGCTGTCGGGCCTGAGGGGGAAGTTTGAGAATGCAGAGGAGGAGAAACGCTCCGTCAGTCTGGAGCTGCAGCAGAGCCAAGAGCGCCTCAGGCTTATGCAGGACAAAGACAACCATCTGTCTTTATTGCAGCCCATCCTAGCCGTAGCCATCGGCCTTGTCCTGGCTTTGCTGTATTGGTGCTTGGGCCCATTGTGGTAGAAAGggaaAATGGATCAGATGGATGCCTGTCGCCGCTGTAACTGTTGCTGTGACAGGATATTTGCTTTCAAAGTCCTCAAAATGAAGCACGTGATGAACCAGTAACAAGCACACGCACCTGACATGCACACCTAGCAAACCTTTCTCAGATGTCTTGACTTTTTTTGTCCTTTTAGTCCGCGGGATGTTAGTTTGAGTAATGAGTATTTAAAAGCAACTTCTTACTCAAATGTTAAAGGGAGTAATAACGTGAGAACATttcccatcttttttttttaaattagatgtACTGTTTGCATAGCATTT
>TCONS_00042903
AAACGGCAGCAGAGCGAGAGCATGAGGTCAGTGCGCTGAAGGGGAATCTTGCAACGCTCACTTCAGAGCTGGAAAAATGGCAGCAGGCAGCAAACAAGTACGAGCGCGAGCTTGAAAGTGTACAGGCAAGTCACCTGCAGCAGAACCAGCAGAGGGACAGAGCCACCAAACAACAAGCGGGCGAGCTGGAGAAGGTGCAGAAGGACTGTGAGAGCCTGAGGAGGGACTGTGCATCTCTGAGGTCAGAGAGAGAGCAGCTGGCTGATAAACAGCAGAAAGAGAAGGCCAGTCTGCAGAATGAGAACAGCAGCCTGCGCTCAGAGAAAGAACAGCTACAGAAGAAACAACAGCAGCTGGAGAAAGAGCTGGACAGGTCTGTCCTATGCTGTATTAACAACAGAGAATTTAATTCTGAACCTTTTCTCACATTTTGGATCCCCTTAGTGTCTTTCATGGGTCAAAATGTATCATAATGTTACTTTTATTGTActgtttattttaacaatttttacaCAGTTTTTCATGCAAGTTTTtggtcatatttattttatttatcttcctttttttttgtaaaagacaATTACCAAATGACAATTCCAGTCTTTTTGTCGTGAATATCCCTGATGCCCTCTTGTGGAAAAGACAATCGCAAATAAATTGCAATTTATTGTGCCTACCACTAGATAGGCCTTTAGAGCTCATTTGAGATTTTATACAGagcaacataaataaaataattaataaatatgg
>TCONS_00042905
gtgattgagtgagtgagcgagcaaTAACACTGTATCTGTGAGTTTGTTCATttttgtgtgcgtttgtgtgcagCGGGCGAGCTGGAGAAGGTGCAGAAGGACTGTGAGAGCCTGAGGAGGGACTGTGCATCTCTGAGGTCAGAGAGAGAGCAGCTGGCTGATAAACAGCAGAAAGAGAAGGCCAGTCTGCAGAATGAGAACAGCAGCCTGCGCTCAGAGAAAGAACAGCTACAGAAGAAACAACAGCAGCTGGAGAAAGAGCTGGACAGCTCCAAGAAACAGAACACCAGCCTGAGCAACACGGTCAAGAGCCTGGAAAAGACGCAGGCCGACCTGGAGAAGCGTCTGAGCGTCCTGCAGGAGGAGCACCAGAGAGACAACGGGCAGCTGGAGCAGAGCAACAGCAGGATCAAAGAACTGCAGAAAGAGTATGAGGAGATGCAGGCAGAGCTGTCGGGCCTGAGGGGGAAGTTTGAGAATGCAGAGGAGGAGAAACGCTCCGTCAGTCTGGAGCTGCAGCAGAGCCAAGAGCGCCTCAGGCTTATGCAGGACAAAGACAACCATCTGTCTTTATTGCAGCCCATCCTAGCCGTAGCCATCGGCCTTGTCCTGGCTTTGCTGTATTGGTGCTTGGGCCCATTGTGGTAGAAAGggaaAATGGATCAGATGGATGCCTGTCGCCGCTGTAACTGTTGCTGTGACAGGATATTTGCTTTCAAAGTCCTCAAAATGAAGCACGTGATGAACCAGTAACAAGCACACGCACCTGACATGCACACCTAGCAAACCTTTCTCAGATGTCTTGACTTTTTTTGTCCTTTTAGTCCGCGGGATGTTAGTTTGAGTAATGAGTATTTAAAAGCAACTTCTTACTCAAATGTTAAAGGGAGTAATAACGTGAGAACATttcccatcttttttttttaaattagatgtACTGTTTGCATAGCATTT

Function

symbol description
slmapb Predicted to be involved in protein localization to plasma membrane; regulation of membrane depolarization during cardiac muscle cell action potential; and regulation of voltage-gated sodium channel activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; median fin fold; nervous system; neural crest; and pharyngeal arch 3-7 skeleton. Orthologous to human SLMAP (sarcolemma associated protein).

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-809 Predicted to be involved in protein localization to plasma membrane; regulation of membrane depolarization during cardiac muscle cell action potential; and regulation of voltage-gated sodium channel activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; median fin fold; nervous system; neural crest; and pharyngeal arch 3-7 skeleton. Orthologous to human SLMAP (sarcolemma associated protein).

Ensembl:

ensembl_id ENSDARG00000020764

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042900 False 2071 mRNA 0.47 9 19590006 19604413
TCONS_00042901 False 1142 mRNA 0.53 8 19590598 19603695
TCONS_00042902 False 595 lncRNA 0.52 3 19594239 19600895
TCONS_00042904 False 1275 lncRNA 0.50 6 19594239 19603908
TCONS_00042903 False 750 lncRNA 0.42 2 19594456 19598321
TCONS_00042905 True 954 lncRNA 0.49 5 19597676 19603908

Neighbor

gene id symbol gene type direction distance location
XLOC_021615 atp6ap1lb coding upstream 6192 19558574 ~ 19583814 (+)
XLOC_021614 NA coding upstream 113855 19473396 ~ 19476151 (+)
XLOC_021612 apobec2b coding upstream 368979 19213472 ~ 19221027 (+)
XLOC_021613 CR388168.1 coding upstream 371066 19217528 ~ 19218940 (+)
XLOC_021611 si:dkey-109j17.5 coding upstream 383587 19202636 ~ 19206419 (+)
XLOC_021617 flnb coding downstream 1878 19606291 ~ 19652915 (+)
XLOC_021618 abhd6b coding downstream 50888 19655301 ~ 19667758 (+)
XLOC_021619 kctd6b coding downstream 65672 19670085 ~ 19673769 (+)
XLOC_021620 smim4 coding downstream 71367 19675780 ~ 19677933 (+)
XLOC_021621 si:dkey-93l1.6 coding downstream 86733 19691146 ~ 19695976 (+)
XLOC_021608 CR388168.2 non-coding upstream 407618 19177891 ~ 19182388 (+)
XLOC_021607 NA non-coding upstream 470563 19105546 ~ 19119443 (+)
XLOC_021606 CR788311.1 non-coding upstream 523019 19051485 ~ 19066987 (+)
XLOC_021627 AL953864.1 non-coding downstream 583212 20187625 ~ 20187739 (+)
XLOC_021628 NA non-coding downstream 740897 20345310 ~ 20361426 (+)
XLOC_021632 CR352228.2 non-coding downstream 867342 20471755 ~ 20471870 (+)
XLOC_021651 NA non-coding downstream 1868689 21473102 ~ 21474482 (+)
XLOC_021656 CR847529.1 non-coding downstream 2019322 21623735 ~ 21623849 (+)

Expression


Co-expression Network