LOC110512609 (LOC106579779)


Basic Information

Item Value
gene id LOC110512609
gene name LOC106579779
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19877497 ~ 19895848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592895.2
AAGATACCGTGCTTGTGTTTGTGACCGACCCAGGAAGAGATAGGAATGTAACTTTGGTCGACGCTAGCACTAGTTCGCGCTCCGGTCAGGAAGTGTTATTGAAACTGCTGTCAGTCACTGAATGACAGCGGTGACAATATGAATGTGTATGCATAGTTAACACATTTGGGAATGTTCAGCTAGATACCAAGAGAATCAAGTATAATGGCTATCTTTGCGTTGTTGCAGGGATGGACTTATCAACCCAAGAGCCTGGAGAAACACACTGACAGCATCCTCGGATGgGCGTCAGCTTTGTGGTCTCTGTCATACTAcagctcccctctcctcctctgctacCTTTACAGAaaagggtaCATCTGCAGCAGTAAGCTGgtcccagtcagtcagtatgtggGAACAGTAATGGTTTGTCTGCTGGGAGTTGCCTGTCTGAGAGgttgGGGACGGTGGAGGAACTCGGAGTATCAACAGTTCATCTCcattctggaggaaaccaggaaGAACCACACGCCTAGCAACAAGAAAAAACTGGCCTGCTATGATTTTGACTTCTCTCACTGGCCGGCAGACTTCAGCTGGGAAGAAGTTAGCAATccGAAGCTGCTGTCCAAGACAGGAGTGTCTCTACTGAAGCCAGAGCCCAAACTGAGAGGGGCAGCAGACAGCGTGCTCAACTCTTTACGCACTCTACCATGCCACATCGTCAGtTTTCTGATTGCCCACTCATTTGGAAGGAGGATGCTGTACCCTGGGTCTGTATTCCTACTGCAAAGGGCTATGAGACCCATGCTACAACAGGGCCAGGCTAGACTTATAGAAGAGTGTGAGGGCCAGAGGAACAAGCTGGTGGCGTGTGATGGGAATGAGATTGATACCATGTTTGTGGACCGCAGGAGAGACGAAGGACAGCATGGACAGACTCTGGTGATCTGCTGTGAGGGGAACGCAGGCTTCTATGAGGTGGGCTGTATGAACACTCCATTGGAAGGTGGATACTCAGTGCTTGGCTGGAACCACCCTGGCTTTGCAGGTAGCACGGGCGTACCGTTCCCCCAGAACGAGGCCAATGCCATGGATGTAGTGATCCAGTTTGCAGTGCACAAGCTGGGCTTCCAGCTCAGTGAAATAGTGGTGTATGCCTGGTCCATAGGGGGATTCACAGCCAGTTGGGCGGTGATGTCCTATCCAGAGATCCAAGCGCTGGTGTTGGATGCATCCTTTGATGACCTGCTGCCTCTGGCCCTCAAGGTCATGCCCGACAGCTGGAGGCCGCTGGtgacacacacagtcaggcaGTACATGAACCTCAACAGTGCAGATCAGCTCTGCAAGTACCAGGGACCAGTGCTTCTGATCAGAAGAACCAAAGATGAGATCATTACCACCACGGGTCCAGAAGACATCATGTCCAACAGAGGAAACAACCTCCTGCTCAAACTTCTGCAGTTCAGGTACCCCCAGGTGATGACAGATGATGGAGTCAGGGCCATCAGAGCATGGCTGGCAGCCTCCAACCACGTAGAAGAGGCAGCGGTGTACAGTAGCTATGAGGTGGATGATGACTGGTGTGTGTCTGTTCTGCAGTCGTATAAGACGGAGAGAGATGTTTTCTTCCCCTGGAGCGTTGGTGAGGACATGACACTGGAGGGAAGACGGCAACTGGCTCTTTTCCTGGCACGGAAGTACATGCGGAACTTCGACTCAACTCACTGCACTCCTCTCCCCTACTCTGAATTCACTGCCCCTTGGAGACTGTAGAAAGAGGGTTGAAGGATGGATAGAAACGAGAAGCAAAGAGCCTGGCGGGGACCAACCAATCAGAGGTTTACAGCGCATGGATTGAATGTATCTATGGGAGGTGTACAAGGCAGCTAGACCCAGTCGGTATTGGAATGTTGCGACCCTGCCCACCTGGCTCATAGCAAAACCTTGGCATTTGTCTACTTGTTTTAATCAATTACAAAATGTACATGTCTAAAGATTACTGCTCCCTAGCAAAACGTAATATTGCCTCATGCCCCTTTATGATGCTAGCGTCCGACCGGAACATCAAGCTAGTCAAGACCAACGCTATACAGCTACAAATAGTGAGTGGAGTTCCAAACGAACTGTGCTAAACAAGTTAAGTCTTACCTGTGATAGTGCTTTCCCACGCCaaatagcctgaagccacagggctcttccTCGACATGGGAGAATTGCGAACAGTAGGTTGTGATTTGACCTGGCTACATGTACAATTGAACACAGCAGCTTTTTAGCATGTTTTATTTCtgtacaaaacaaaaataaacaaagttGGCTCTTTTACAATGTGGGCGTGGTCTAAGGGAATTCCTTATCGTCTGAGTATAATACCCTGACTTCACCGCTCGCGTCGCAAAATAAATCTAGagatctatattattcaattgtTGCCGAGAAGTTACACAACAGGACCCAAACTGTCTGCCATCGtgcataaatatatatttaagcCTAGAAGGAGAGATGACTCGAAACGATTCTATTGACCGTTTTGTGTGGATTAGTTGTCAAGGACCATTTCAGGTCAAATGTTTATGAATTGCcattaatgcttttcgacctgtccccaaattaatgtaattggttgtttgttttgatattttaacctgtgtgtcgtgatcgcgtttgtggggggacaaaataaatgtatgcatgtTGGCGCACTCATGCagctggtttgggttccgtgttgcAATGGCTTTGTTCATATTTATAAACTGGGgggttccagccctgaatgctgatcggctgatagccgtggtatatcagaccatatactacgtttatttttactgctctaattacgttgggtGTTGTGATATGGCcaataccacagctaagggctgtatcccgGAACTCTGCGTTGCATCGTACAAAAGAACAGCCCCAAAccgtataccacaccccctcaggccttattgcttaaatatacactGCCGTCCTCGAGAACTAGATATTTAAAATGCCTCCCATGAAGTAACTATTgattagatttaaaaaaagtcTCTATCCTATTGCCTTTGACTACACTACTACAAGGAAGGAAAGATGCATCTTAAAGGAATGAGgtcttctctccctctggctGCATTTAAAAAAGAGTTATTCCAAATAAATTGTCTTTGATAGCCTCAGATTAAGCCTAGACACACAGATCTACTTTTTACAAATATAGCCAGGCCATCCTCACTTTAAAGCGCTACATTTTGTTGTTCACTCATTATGAACAAAGCTGTATCCTGATAATGCTCAataaaatgttgacattttattTATGAAA
>XM_021592890.2
CACTTTGTATGTCTGGAATTTACGTCCTGTGTCGGCTGCCGTAGCTACCAGAGGAAGAATGGCCGGCTGGATGTGGATCCGCTGCTTTTTGGGGCCTCATCTCCAGAGAGTGCACCGTTCACAGGGGGAGTCCCGAACCGAAGGAAGAGCAGGGAGGAGGGGATGGACTTATCAACCCAAGAGCCTGGAGAAACACACTGACAGCATCCTCGGATGgGCGTCAGCTTTGTGGTCTCTGTCATACTAcagctcccctctcctcctctgctacCTTTACAGAaaagggtaCATCTGCAGCAGTAAGCTGgtcccagtcagtcagtatgtggGAACAGTAATGGTTTGTCTGCTGGGAGTTGCCTGTCTGAGAGgttgGGGACGGTGGAGGAACTCGGAGTATCAACAGTTCATCTCcattctggaggaaaccaggaaGAACCACACGCCTAGCAACAAGAAAAAACTGGCCTGCTATGATTTTGACTTCTCTCACTGGCCGGCAGACTTCAGCTGGGAAGAAGTTAGCAATccGAAGCTGCTGTCCAAGACAGGAGTGTCTCTACTGAAGCCAGAGCCCAAACTGAGAGGGGCAGCAGACAGCGTGCTCAACTCTTTACGCACTCTACCATGCCACATCGTCAGtTTTCTGATTGCCCACTCATTTGGAAGGAGGATGCTGTACCCTGGGTCTGTATTCCTACTGCAAAGGGCTATGAGACCCATGCTACAACAGGGCCAGGCTAGACTTATAGAAGAGTGTGAGGGCCAGAGGAACAAGCTGGTGGCGTGTGATGGGAATGAGATTGATACCATGTTTGTGGACCGCAGGAGAGACGAAGGACAGCATGGACAGACTCTGGTGATCTGCTGTGAGGGGAACGCAGGCTTCTATGAGGTGGGCTGTATGAACACTCCATTGGAAGGTGGATACTCAGTGCTTGGCTGGAACCACCCTGGCTTTGCAGGTAGCACGGGCGTACCGTTCCCCCAGAACGAGGCCAATGCCATGGATGTAGTGATCCAGTTTGCAGTGCACAAGCTGGGCTTCCAGCTCAGTGAAATAGTGGTGTATGCCTGGTCCATAGGGGGATTCACAGCCAGTTGGGCGGTGATGTCCTATCCAGAGATCCAAGCGCTGGTGTTGGATGCATCCTTTGATGACCTGCTGCCTCTGGCCCTCAAGGTCATGCCCGACAGCTGGAGGCCGCTGGtgacacacacagtcaggcaGTACATGAACCTCAACAGTGCAGATCAGCTCTGCAAGTACCAGGGACCAGTGCTTCTGATCAGAAGAACCAAAGATGAGATCATTACCACCACGGGTCCAGAAGACATCATGTCCAACAGAGGAAACAACCTCCTGCTCAAACTTCTGCAGTTCAGGTACCCCCAGGTGATGACAGATGATGGAGTCAGGGCCATCAGAGCATGGCTGGCAGCCTCCAACCACGTAGAAGAGGCAGCGGTGTACAGTAGCTATGAGGTGGATGATGACTGGTGTGTGTCTGTTCTGCAGTCGTATAAGACGGAGAGAGATGTTTTCTTCCCCTGGAGCGTTGGTGAGGACATGACACTGGAGGGAAGACGGCAACTGGCTCTTTTCCTGGCACGGAAGTACATGCGGAACTTCGACTCAACTCACTGCACTCCTCTCCCCTACTCTGAATTCACTGCCCCTTGGAGACTGTAGAAAGAGGGTTGAAGGATGGATAGAAACGAGAAGCAAAGAGCCTGGCGGGGACCAACCAATCAGAGGTTTACAGCGCATGGATTGAATGTATCTATGGGAGGTGTACAAGGCAGCTAGACCCAGTCGGTATTGGAATGTTGCGACCCTGCCCACCTGGCTCATAGCAAAACCTTGGCATTTGTCTACTTGTTTTAATCAATTACAAAATGTACATGTCTAAAGATTACTGCTCCCTAGCAAAACGTAATATTGCCTCATGCCCCTTTATGATGCTAGCGTCCGACCGGAACATCAAGCTAGTCAAGACCAACGCTATACAGCTACAAATAGTGAGTGGAGTTCCAAACGAACTGTGCTAAACAAGTTAAGTCTTACCTGTGATAGTGCTTTCCCACGCCaaatagcctgaagccacagggctcttccTCGACATGGGAGAATTGCGAACAGTAGGTTGTGATTTGACCTGGCTACATGTACAATTGAACACAGCAGCTTTTTAGCATGTTTTATTTCtgtacaaaacaaaaataaacaaagttGGCTCTTTTACAATGTGGGCGTGGTCTAAGGGAATTCCTTATCGTCTGAGTATAATACCCTGACTTCACCGCTCGCGTCGCAAAATAAATCTAGagatctatattattcaattgtTGCCGAGAAGTTACACAACAGGACCCAAACTGTCTGCCATCGtgcataaatatatatttaagcCTAGAAGGAGAGATGACTCGAAACGATTCTATTGACCGTTTTGTGTGGATTAGTTGTCAAGGACCATTTCAGGTCAAATGTTTATGAATTGCcattaatgcttttcgacctgtccccaaattaatgtaattggttgtttgttttgatattttaacctgtgtgtcgtgatcgcgtttgtggggggacaaaataaatgtatgcatgtTGGCGCACTCATGCagctggtttgggttccgtgttgcAATGGCTTTGTTCATATTTATAAACTGGGgggttccagccctgaatgctgatcggctgatagccgtggtatatcagaccatatactacgtttatttttactgctctaattacgttgggtGTTGTGATATGGCcaataccacagctaagggctgtatcccgGAACTCTGCGTTGCATCGTACAAAAGAACAGCCCCAAAccgtataccacaccccctcaggccttattgcttaaatatacactGCCGTCCTCGAGAACTAGATATTTAAAATGCCTCCCATGAAGTAACTATTgattagatttaaaaaaagtcTCTATCCTATTGCCTTTGACTACACTACTACAAGGAAGGAAAGATGCATCTTAAAGGAATGAGgtcttctctccctctggctGCATTTAAAAAAGAGTTATTCCAAATAAATTGTCTTTGATAGCCTCAGATTAAGCCTAGACACACAGATCTACTTTTTACAAATATAGCCAGGCCATCCTCACTTTAAAGCGCTACATTTTGTTGTTCACTCATTATGAACAAAGCTGTATCCTGATAATGCTCAataaaatgttgacattttattTATGAAA

Function

NR:

description
protein ABHD16A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592895.2 False 3310 mRNA 0.47 19 19877497 19895676
XM_021592890.2 True 3242 mRNA 0.48 19 19877497 19895848

Neighbor

gene id symbol gene type direction distance location
LOC110512516 LOC106579712 coding downstream 26389 19827342 ~ 19851108 (-)
LOC110512480 flot1 coding downstream 91936 19762376 ~ 19785561 (-)
LOC110512409 LOC106605396 coding downstream 210032 19655283 ~ 19667465 (-)
rims2a LOC106579570 coding downstream 224931 19416054 ~ 19652601 (-)
LOC110511176 LOC106579058 coding downstream 595129 19065512 ~ 19282368 (-)
g6f-like-b g6f-like-b coding upstream 18672 19914520 ~ 19931740 (-)
LOC110512652 riiad1 coding upstream 118744 20014592 ~ 20018502 (-)
dnah5 LOC106579813 coding upstream 128062 20023910 ~ 20090697 (-)
LOC110512703 LOC106579851 coding upstream 366678 20262526 ~ 20270372 (-)
LOC110512719 LOC106579893 coding upstream 376526 20272374 ~ 20275308 (-)
G233096 LOC106579727 non-coding downstream 5268 19871266 ~ 19872229 (-)
G233064 NA non-coding downstream 13615 19863298 ~ 19863882 (-)
G233090 NA non-coding downstream 25051 19852232 ~ 19852446 (-)
G233082 LOC106605400 non-coding downstream 56295 19818293 ~ 19821202 (-)
G233098 NA non-coding upstream 2593 19898441 ~ 19920613 (-)
G233136 LOC106579633 non-coding upstream 65885 19961733 ~ 19997877 (-)
G233366 NA non-coding upstream 453789 20349637 ~ 20349902 (-)
G233430 NA non-coding upstream 539695 20435543 ~ 20444642 (-)
G233052 LOC106605397 other downstream 120879 19756204 ~ 19757908 (-)
G232980 NA other downstream 228868 19648086 ~ 19648629 (-)
G231652 rn146 other downstream 1275622 18599730 ~ 18601875 (-)
G233513 LOC106561082 other upstream 655935 20551783 ~ 20551997 (-)
glipr2l LOC106605424 other upstream 752923 20648378 ~ 20652052 (-)
G234224 LOC106605437 other upstream 1282749 21178597 ~ 21180682 (-)
LOC110513321 LOC106580205 other upstream 1549640 21438546 ~ 21455972 (-)
G234600 NA other upstream 1573813 21469661 ~ 21469945 (-)

Expression


Co-expression Network